Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0002667

Physical Location & Seq

Genomic Coordinates Reverse (-)

8063647 .. 8073047

Gene Structure 9401 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG049600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1350 bp

ATGGCAGTGGGAGAGATCTTTCTTGCGGCATTCCTTCAGTTGCTGCTGGACAGGTTAACGCCTGGGGAGATCCTTGGCTACTTTGGAAGCTTGGGAGGAGTTGGCAAAAAGCTCCAGAAATGGAGAGAGACACTTTCCGCAGTTAAAGCGGTGCTTTCCGATGCGGAGGAGAAGCAGCTGACGAACACGGCAGTGGATCTGTGGCTGAATGACCTCAAACACTTGGCTTATGATATCGACGATCTACTCAGCACCTTTTCTAATGAGATGTTAGCACGCAAGCAGCTCAAGCTTCACCAAACTGGCACAAGCAAGGTACGAGGCTTCTTTACCAAAGTTCCTCATAGAGTCAAGTTCAGTTTCAATATGAACTCCGAAATAGACGAGGTTGCTAACCGCTTGCAAGACATACTTGACCGGAAAGAGAAACTCGGTTTGAAATATATTGAGCATACCTCTACTTCAGCGAAAAGGACACCAAGTTCGCCTGTGTTGGATGGACCTGTGGTTGGGAGAGTTGAAGACGCAGGAAAGATTGTCGAATTGTTGTCCAGAGATGCTGATCCTTCTTCTCCCACAAATTATCAAGTTGTTGCCATTGTTGGCAGTCTGATCTGTGGTTTTCTCTGTAATCAGTGCTTGGGGGTTGCATATATTCAAGAAGTAGGGGTTGCATCCCATACAAATCAGAGCCTATGGAGTTCAATTCCCAAACACCACCATCGTCATCGAACTAACTTTACTACTAGTTGTGACTATAGACCTGCAAGAAGTACAAGATTGAGAAATTATTTCAGCTTCATGGACAGTTTTGATTCTTCTATAGTTATTTCTGAAATTGTTGAAAGTTGCCGTGCACATGACTACACAGATGTTGTGTTGGTGCATGAACATCGTGGTAAACCTGATGGTTTGATTGTATGCCACCTTCCATATGGACCAACAGCTTATTTTCAACTATGCAATGTGGTTTCAAGACATGACATCAAGGACAAGAAAGCCATGGGAACGGTGCCACAGGCTTATCCACATTTGATAATTAACAATTTCACGACTAAGTTGGGTGAGCGGACTGCAAATATTTTAAAACATCTTTTTCCAGTGCCAAAGCCAGATACAAAATGCATAATCACTTTTTCGAATGAGCAGGACTACATTTCATTCAGGCATCATATTTATGACAAGCCTGGAGGTCCTAAATCCATTGAGCTGAAGGAGATTGGTCCGCTGTTTGAGTTGAAGCTTTTCAAGATAAAATTAGGAACAGTGGATCAGAATGAAGCCCAGAATGAATGGGTCCTCAAACCGTACATGAACACAGCCAAGAAACAGAAATTTATAGGGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Brix

Protein Analysis

449

Amino Acids

50.63

Weight (kDa)

8.8

Isoelectric Point (pI)

32.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rx_N	PF18052	10 - 99	2.2e-19	Rx N-terminal domain
Brix	PF04427	280 - 417	1.2e-21	Brix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002667)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63780
fragaria_vesca	FvH4_7g02470 FvH4_7g02470 FvH4_7g02470 FvH4_7g02470 FvH4_7g02470
malus_domestica	MD05G1030400.v1.1 MD10G1031800.v1.1
prunus_persica	Prupe.2G030400_v2.0.a1 Prupe.2G030400_v2.0.a1 Prupe.2G030400_v2.0.a1 Prupe.8G084800_v2.0.a1 Prupe.8G084800_v2.0.a1
pyrus_communis	pycom05g02160 pycom10g02010
rosa_chinensis	RchiOBHm_Chr1g0319831 RchiOBHm_Chr1g0320641 RchiOBHm_Chr1g0320961 RchiOBHm_Chr1g0321121
rosa_laevigata	RLG00000030450
rosa_multiflora	Rmu_sc0004627.1_g000009 Rmu_sc0004660.1_g000006 Rmu_sc0007977.1_g000009 Rmu_sc0008752.1_g000006
rosa_roxburghii	Rroxscaffold_160G00433730 Rroxscaffold_4G00328080
rosa_rugosa	Rorug01G0031000 Rorug01G0031100
rosa_samantha	Rh1AG043100 Rh1BG039800 Rh1CG043200 Rh1CG045200 Rh1DG022700 Rh1DG024200 Rh1DG025900 Rh1DG049600 Rh1DG049800
rosa_wichuraiana	Rw0G001080 Rw1G003660 Rw1G003780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	772
AccB1I	GGYRCC	1 cut(s)	1012
AccBSI	CCGCTC	1 cut(s)	1069
AciI	CCGC	7 cut(s)	26, 138, 149, 164, 397, 1069, 1226
AclWI	GGATC	4 cut(s)	64, 204, 557, 1278
AcsI	RAATTY	1 cut(s)	1334
AcuI	CTGAAG	3 cut(s)	20, 447, 1232
AfaI	GTAC	3 cut(s)	318, 775, 1310
AfiI	CCNNNNNNNGG	1 cut(s)	509
AhlI	ACTAGT	1 cut(s)	746
AjnI	CCWGG	2 cut(s)	61, 1186
AleI	CACNNNNGTG	1 cut(s)	191
AloI	GAACNNNNNNTCC	2 cut(s)	466, 498
AluBI	AGCT	9 cut(s)	90, 112, 178, 286, 292, 798, 947, 1210, 1243
AluI	AGCT	9 cut(s)	90, 112, 178, 286, 292, 798, 947, 1210, 1243
Alw21I	GWGCWC	1 cut(s)	859
Alw26I	GTCTC	1 cut(s)	122
Alw44I	GTGCAC	1 cut(s)	855
AlwI	GGATC	4 cut(s)	64, 204, 557, 1278
AlwNI	CAGNNNCTG	1 cut(s)	43
ApaLI	GTGCAC	1 cut(s)	855
ApeKI	GCWGC	3 cut(s)	43, 175, 283
ApoI	RAATTY	1 cut(s)	1334
ArsI	GACNNNNNNTTYG	2 cut(s)	466, 498
Asp700I	GAANNNNTTC	1 cut(s)	1244
AspS9I	GGNCC	5 cut(s)	500, 938, 1193, 1223, 1297
AsuHPI	GGTGA	2 cut(s)	287, 1076
AsuII	TTCGAA	1 cut(s)	1139
AvaII	GGWCC	5 cut(s)	500, 938, 1193, 1223, 1297
BaeGI	GKGCMC	1 cut(s)	859
BanI	GGYRCC	1 cut(s)	1012
BarI	GAAGNNNNNNTAC	2 cut(s)	912, 944
BbsI	GAAGAC	1 cut(s)	528
Bbv12I	GWGCWC	1 cut(s)	859
BbvI	GCAGC	3 cut(s)	30, 187, 295
BccI	CCATC	3 cut(s)	491, 729, 902
BceAI	ACGGC	2 cut(s)	204, 837
BcgI	CGANNNNNNTGC	2 cut(s)	875, 909
BciT130I	CCWGG	2 cut(s)	63, 1188
BcoDI	GTCTC	1 cut(s)	122
BcuI	ACTAGT	1 cut(s)	746
BfaI	CTAG	1 cut(s)	747
BfmI	CTRYAG	2 cut(s)	757, 822
BfuAI	ACCTGC	1 cut(s)	772
BglII	AGATCT	1 cut(s)	15
BisI	GCNGC	4 cut(s)	27, 44, 176, 284
BlsI	GCNGC	4 cut(s)	28, 45, 177, 285
Bme1390I	CCNGG	2 cut(s)	63, 1188
Bme18I	GGWCC	5 cut(s)	500, 938, 1193, 1223, 1297
BmgT120I	GGNCC	5 cut(s)	500, 938, 1193, 1223, 1297
BmiI	GGNNCC	2 cut(s)	1014, 1298
BmrFI	CCNGG	2 cut(s)	63, 1188
BmsI	GCATC	4 cut(s)	151, 547, 683, 1177
BpiI	GAAGAC	1 cut(s)	528
BplI	GAGNNNNNCTC	2 cut(s)	440, 472
BpmI	CTGGAG	2 cut(s)	98, 1209
Bpu14I	TTCGAA	1 cut(s)	1139
BpuEI	CTTGAG	1 cut(s)	272
BsaBI	GATNNNNATC	1 cut(s)	561
BsaJI	CCNNGG	3 cut(s)	62, 73, 1002
BsaWI	WCCGGW	1 cut(s)	417
Bsc4I	CCNNNNNNNGG	1 cut(s)	509
Bse1I	ACTGG	2 cut(s)	307, 1100
Bse3DI	GCAATG	1 cut(s)	970
Bse8I	GATNNNNATC	1 cut(s)	561
BseBI	CCWGG	2 cut(s)	63, 1188
BseDI	CCNNGG	3 cut(s)	62, 73, 1002
BseGI	GGATG	2 cut(s)	502, 674
BseJI	GATNNNNATC	1 cut(s)	561
BseLI	CCNNNNNNNGG	1 cut(s)	509
BseMI	GCAATG	1 cut(s)	970
BseMII	CTCAG	1 cut(s)	262
BseNI	ACTGG	2 cut(s)	307, 1100
BseRI	GAGGAG	2 cut(s)	111, 182
BseSI	GKGCMC	1 cut(s)	859
BseXI	GCAGC	3 cut(s)	30, 187, 295
BshNI	GGYRCC	1 cut(s)	1012
BsiHKAI	GWGCWC	1 cut(s)	859
BsiSI	CCGG	1 cut(s)	418
BslI	CCNNNNNNNGG	1 cut(s)	509
BsmAI	GTCTC	1 cut(s)	122
BsmI	GAATGC	1 cut(s)	29
Bsp119I	TTCGAA	1 cut(s)	1139
Bsp1286I	GDGCHC	1 cut(s)	859
Bsp143I	GATC	7 cut(s)	15, 69, 196, 241, 562, 612, 1270
Bsp19I	CCATGG	1 cut(s)	1002
BspACI	CCGC	7 cut(s)	26, 138, 149, 164, 397, 1069, 1226
BspCNI	CTCAG	1 cut(s)	261
BspLI	GGNNCC	2 cut(s)	1014, 1298
BspMI	ACCTGC	1 cut(s)	772
BspPI	GGATC	4 cut(s)	64, 204, 557, 1278
BspT104I	TTCGAA	1 cut(s)	1139
BspT107I	GGYRCC	1 cut(s)	1012
BsrBI	CCGCTC	1 cut(s)	1069
BsrDI	GCAATG	1 cut(s)	970
BsrI	ACTGG	2 cut(s)	307, 1100
BssECI	CCNNGG	3 cut(s)	62, 73, 1002
BssMI	GATC	7 cut(s)	15, 69, 196, 241, 562, 612, 1270
BssT1I	CCWWGG	2 cut(s)	73, 1002
Bst2UI	CCWGG	2 cut(s)	63, 1188
Bst4CI	ACNGT	4 cut(s)	809, 1012, 1267, 1308
BstBI	TTCGAA	1 cut(s)	1139
BstC8I	GCNNGC	3 cut(s)	277, 281, 401
BstDEI	CTNAG	2 cut(s)	248, 1056
BstDSI	CCRYGG	1 cut(s)	1002
BstF5I	GGATG	2 cut(s)	502, 674
BstKTI	GATC	7 cut(s)	18, 72, 199, 244, 565, 615, 1273
BstMAI	GTCTC	1 cut(s)	122
BstMBI	GATC	7 cut(s)	15, 69, 196, 241, 562, 612, 1270
BstMWI	GCNNNNNNNGC	2 cut(s)	146, 289
BstNI	CCWGG	2 cut(s)	63, 1188
BstSCI	CCNGG	2 cut(s)	61, 1186
BstSFI	CTRYAG	2 cut(s)	757, 822
BstSLI	GKGCMC	1 cut(s)	859
BstV1I	GCAGC	3 cut(s)	30, 187, 295
BstV2I	GAAGAC	1 cut(s)	528
BstX2I	RGATCY	3 cut(s)	15, 69, 196
BstYI	RGATCY	3 cut(s)	15, 69, 196
BtgI	CCRYGG	1 cut(s)	1002
BtsCI	GGATG	2 cut(s)	502, 674
BtsI	GCAGTG	2 cut(s)	12, 198
BtsIMutI	CAGTG	5 cut(s)	12, 198, 641, 1107, 1272
BveI	ACCTGC	1 cut(s)	772
Cac8I	GCNNGC	3 cut(s)	277, 281, 401
CaiI	CAGNNNCTG	1 cut(s)	43
Cfr13I	GGNCC	5 cut(s)	500, 938, 1193, 1223, 1297
CseI	GACGC	1 cut(s)	533
Csp6I	GTAC	3 cut(s)	317, 774, 1309
CviAII	CATG	6 cut(s)	802, 860, 887, 980, 1003, 1312
CviQI	GTAC	3 cut(s)	317, 774, 1309
DdeI	CTNAG	2 cut(s)	248, 1056
DpnI	GATC	7 cut(s)	17, 71, 198, 243, 564, 614, 1272
DpnII	GATC	7 cut(s)	15, 69, 196, 241, 562, 612, 1270
DraI	TTTAAA	1 cut(s)	1086
Eco130I	CCWWGG	2 cut(s)	73, 1002
Eco32I	GATATC	1 cut(s)	235
Eco47I	GGWCC	5 cut(s)	500, 938, 1193, 1223, 1297
Eco57I	CTGAAG	3 cut(s)	20, 447, 1232
EcoO109I	RGGNCCY	2 cut(s)	1193, 1297
EcoRII	CCWGG	2 cut(s)	61, 1186
EcoRV	GATATC	1 cut(s)	235
EcoT14I	CCWWGG	2 cut(s)	73, 1002
EcoT22I	ATGCAT	1 cut(s)	1127
ErhI	CCWWGG	2 cut(s)	73, 1002
FaeI	CATG	6 cut(s)	805, 863, 890, 983, 1006, 1315
FalI	AAGNNNNNCTT	4 cut(s)	138, 170, 396, 428
FatI	CATG	6 cut(s)	801, 859, 886, 979, 1002, 1311
FauNDI	CATATG	1 cut(s)	934
Fnu4HI	GCNGC	4 cut(s)	27, 44, 176, 284
FokI	GGATG	2 cut(s)	509, 661
Fsp4HI	GCNGC	4 cut(s)	27, 44, 176, 284
FspBI	CTAG	1 cut(s)	747
GluI	GCNGC	4 cut(s)	27, 44, 176, 284
GsuI	CTGGAG	2 cut(s)	98, 1209
HapII	CCGG	1 cut(s)	418
HgaI	GACGC	1 cut(s)	533
Hin1II	CATG	6 cut(s)	805, 863, 890, 983, 1006, 1315
HincII	GTYRAC	1 cut(s)	57
HindII	GTYRAC	1 cut(s)	57
HindIII	AAGCTT	3 cut(s)	88, 290, 1241
HinfI	GANTC	2 cut(s)	348, 815
HpaI	GTTAAC	1 cut(s)	57
HpaII	CCGG	1 cut(s)	418
HphI	GGTGA	2 cut(s)	287, 1076
Hpy166II	GTNNAC	3 cut(s)	57, 857, 902
Hpy188I	TCNGA	6 cut(s)	160, 376, 612, 690, 835, 1275
Hpy188III	TCNNGA	6 cut(s)	115, 552, 659, 975, 1051, 1249
Hpy8I	GTNNAC	3 cut(s)	57, 857, 902
Hpy99I	CGWCG	1 cut(s)	242
HpyAV	CCTTC	4 cut(s)	44, 576, 938, 1207
HpyCH4III	ACNGT	4 cut(s)	809, 1012, 1267, 1308
HpyCH4V	TGCA	9 cut(s)	403, 650, 674, 767, 857, 886, 963, 1076, 1125
HpyF10VI	GCNNNNNNNGC	2 cut(s)	146, 289
HpyF3I	CTNAG	2 cut(s)	248, 1056
Hsp92II	CATG	6 cut(s)	805, 863, 890, 983, 1006, 1315
KspAI	GTTAAC	1 cut(s)	57
Kzo9I	GATC	7 cut(s)	15, 69, 196, 241, 562, 612, 1270
LmnI	GCTCC	1 cut(s)	117
Lsp1109I	GCAGC	3 cut(s)	30, 187, 295
LweI	GCATC	4 cut(s)	151, 547, 683, 1177
MaeI	CTAG	1 cut(s)	747
MaeIII	GTNAC	1 cut(s)	752
MalI	GATC	7 cut(s)	17, 71, 198, 243, 564, 614, 1272
MbiI	CCGCTC	1 cut(s)	1069
MboI	GATC	7 cut(s)	15, 69, 196, 241, 562, 612, 1270
MboII	GAAGA	3 cut(s)	533, 561, 810
MflI	RGATCY	3 cut(s)	15, 69, 196
MhlI	GDGCHC	1 cut(s)	859
MlyI	GAGTC	1 cut(s)	357
MmeI	TCCRAC	1 cut(s)	474
MnlI	CCTC	9 cut(s)	89, 160, 224, 314, 351, 379, 466, 1184, 1310
Mph1103I	ATGCAT	1 cut(s)	1127
MroXI	GAANNNNTTC	1 cut(s)	1244
MseI	TTAA	4 cut(s)	56, 144, 1041, 1085
MslI	CAYNNNNRTG	2 cut(s)	191, 1176
MspA1I	CMGCKG	2 cut(s)	178, 1228
MspI	CCGG	1 cut(s)	418
MspR9I	CCNGG	2 cut(s)	63, 1188
Mva1269I	GAATGC	1 cut(s)	29
MvaI	CCWGG	2 cut(s)	63, 1188
MwoI	GCNNNNNNNGC	2 cut(s)	146, 289
NcoI	CCATGG	1 cut(s)	1002
NdeI	CATATG	1 cut(s)	934
NdeII	GATC	7 cut(s)	15, 69, 196, 241, 562, 612, 1270
NlaIII	CATG	6 cut(s)	805, 863, 890, 983, 1006, 1315
NlaIV	GGNNCC	2 cut(s)	1014, 1298
NmuCI	GTSAC	1 cut(s)	752
NsiI	ATGCAT	1 cut(s)	1127
NspV	TTCGAA	1 cut(s)	1139
OliI	CACNNNNGTG	1 cut(s)	191
PctI	GAATGC	1 cut(s)	29
PdmI	GAANNNNTTC	1 cut(s)	1244
PfeI	GAWTC	1 cut(s)	815
PkrI	GCNGC	4 cut(s)	28, 45, 177, 285
PleI	GAGTC	1 cut(s)	356
PpsI	GAGTC	1 cut(s)	356
PpuMI	RGGWCCY	2 cut(s)	1193, 1297
Psp5II	RGGWCCY	2 cut(s)	1193, 1297
Psp6I	CCWGG	2 cut(s)	61, 1186
PspGI	CCWGG	2 cut(s)	61, 1186
PspN4I	GGNNCC	2 cut(s)	1014, 1298
PspPI	GGNCC	5 cut(s)	500, 938, 1193, 1223, 1297
PspPPI	RGGWCCY	2 cut(s)	1193, 1297
PsrI	GAACNNNNNNTAC	2 cut(s)	724, 756
PstNI	CAGNNNCTG	1 cut(s)	43
PsuI	RGATCY	3 cut(s)	15, 69, 196
PvuII	CAGCTG	1 cut(s)	178
RsaI	GTAC	3 cut(s)	318, 775, 1310
RsaNI	GTAC	3 cut(s)	317, 774, 1309
RseI	CAYNNNNRTG	2 cut(s)	191, 1176
SaqAI	TTAA	4 cut(s)	56, 144, 1041, 1085
SatI	GCNGC	4 cut(s)	27, 44, 176, 284
Sau3AI	GATC	7 cut(s)	15, 69, 196, 241, 562, 612, 1270
Sau96I	GGNCC	5 cut(s)	500, 938, 1193, 1223, 1297
SchI	GAGTC	1 cut(s)	357
ScrFI	CCNGG	2 cut(s)	63, 1188
SduI	GDGCHC	1 cut(s)	859
SfaNI	GCATC	4 cut(s)	151, 547, 683, 1177
SfcI	CTRYAG	2 cut(s)	757, 822
SfuI	TTCGAA	1 cut(s)	1139
SinI	GGWCC	5 cut(s)	500, 938, 1193, 1223, 1297
SmiMI	CAYNNNNRTG	2 cut(s)	191, 1176
SmlI	CTYRAG	1 cut(s)	287
SmoI	CTYRAG	1 cut(s)	287
SpeI	ACTAGT	1 cut(s)	746
SsiI	CCGC	7 cut(s)	26, 138, 149, 164, 397, 1069, 1226
SspI	AATATT	1 cut(s)	1081
SspMI	CTAG	1 cut(s)	747
StyD4I	CCNGG	2 cut(s)	61, 1186
StyI	CCWWGG	2 cut(s)	73, 1002
TaaI	ACNGT	4 cut(s)	809, 1012, 1267, 1308
TaqI	TCGA	4 cut(s)	237, 540, 730, 1139
TatI	WGTACW	1 cut(s)	773
TauI	GCSGC	1 cut(s)	29
TfiI	GAWTC	1 cut(s)	815
Tru1I	TTAA	4 cut(s)	56, 144, 1041, 1085
Tru9I	TTAA	4 cut(s)	56, 144, 1041, 1085
TscAI	CASTG	5 cut(s)	12, 198, 641, 1107, 1272
TseFI	GTSAC	1 cut(s)	752
TseI	GCWGC	3 cut(s)	43, 175, 283
Tsp45I	GTSAC	1 cut(s)	752
TspDTI	ATGAA	7 cut(s)	383, 790, 903, 1149, 1293, 1305, 1328
TspRI	CASTG	5 cut(s)	12, 198, 641, 1107, 1272
VneI	GTGCAC	1 cut(s)	855
VpaK11BI	GGWCC	5 cut(s)	500, 938, 1193, 1223, 1297
XapI	RAATTY	1 cut(s)	1334
XcmI	CCANNNNNNNNNTGG	1 cut(s)	932
XmnI	GAANNNNTTC	1 cut(s)	1244
XspI	CTAG	1 cut(s)	747
Zsp2I	ATGCAT	1 cut(s)	1127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.