Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0002667

Physical Location & Seq

Genomic Coordinates Reverse (-)

3231889 .. 3238773

Gene Structure 6885 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G030400.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGCTGCGTCGGAAAATTAGGTTAACGAAGGAGTACTTGTACAGAAAGGGCTTGGAAGGCAAACAACGGTTGCTCTATGAGAAGAAGCGCAAGATCAGAGAAGCTCTAGAAGAGGGAAAACCAATACCCACTGAGCTTCGAAATGAGGAAGCTGCCCTTCGTGAAGAAATTGATCTGGAGGACGAAAACACTGCCGTGCCAAGGTCACATATTGATGATGAGTATGCAAACGCATCACAGAGGGACCCCAAAATTTTACTAACTACTTCCAGGGATCCGAGTGCTCCGCTGATACAATTTGCAAAGGAACTGAAACTTGTTTTTCCTAATGCACAACAAATGAATCGTGGTGGCCAGGTTATTTCTGAAATCATTGAAACTTGCCGCGCACACGATTTTACAGATGTTGTGTTGGTTCATGAGCATCGTGGTGTACCAGATGGCTTGATTATAAGCCACCTTCCTTTTGGTCCAACAGCTTATTTTCAACTACTCAATGTGGTTACAAGACATGACATCAAAGATAAGAAAACCATGGGAACGATGCCTCAGGTTTATCCACATTTGATTCTCAACAATTTCACGACTAAGTTGGGTGAGAGGACAGCAAATATTTTAAAGCATCTCTTTCCAGTTCCAAAGCAGGACACGAAACGCATAATCACTTTCGCCAATCAGTCTGACTACATTTCATTCAGGCATCATACTTATGAGAAGCACGGAGGCCCTAAATCCGTTGAGCTGAAGGAGGTTGGTCCTCGGTTTGAATTGAGGCTTTTTAAGATTAAGTTAGGAACAGTGGATCAGAATGAAGCCCAGACTGAATGGGTTATCAGACCATACATGAACACAGCCAAGAAACAGAAGTTTATGGGGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Brix

Protein Analysis

294

Amino Acids

34.01

Weight (kDa)

9.34

Isoelectric Point (pI)

38.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002667)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63780
fragaria_vesca	FvH4_7g02470 FvH4_7g02470 FvH4_7g02470 FvH4_7g02470 FvH4_7g02470
malus_domestica	MD05G1030400.v1.1 MD10G1031800.v1.1
prunus_persica	Prupe.2G030400_v2.0.a1 Prupe.2G030400_v2.0.a1 Prupe.2G030400_v2.0.a1 Prupe.8G084800_v2.0.a1 Prupe.8G084800_v2.0.a1
pyrus_communis	pycom05g02160 pycom10g02010
rosa_chinensis	RchiOBHm_Chr1g0319831 RchiOBHm_Chr1g0320641 RchiOBHm_Chr1g0320961 RchiOBHm_Chr1g0321121
rosa_laevigata	RLG00000030450
rosa_multiflora	Rmu_sc0004627.1_g000009 Rmu_sc0004660.1_g000006 Rmu_sc0007977.1_g000009 Rmu_sc0008752.1_g000006
rosa_roxburghii	Rroxscaffold_160G00433730 Rroxscaffold_4G00328080
rosa_rugosa	Rorug01G0031000 Rorug01G0031100
rosa_samantha	Rh1AG043100 Rh1BG039800 Rh1CG043200 Rh1CG045200 Rh1DG022700 Rh1DG024200 Rh1DG025900 Rh1DG049600 Rh1DG049800
rosa_wichuraiana	Rw0G001080 Rw1G003660 Rw1G003780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	452
AccII	CGCG	1 cut(s)	387
AciI	CCGC	2 cut(s)	287, 385
AclWI	GGATC	3 cut(s)	269, 282, 810
AcoI	YGGCCR	1 cut(s)	352
AcsI	RAATTY	1 cut(s)	252
AcuI	CTGAAG	1 cut(s)	764
AfaI	GTAC	3 cut(s)	35, 41, 435
AfiI	CCNNNNNNNGG	1 cut(s)	201
AgsI	TTSAA	3 cut(s)	377, 488, 767
AjnI	CCWGG	2 cut(s)	269, 354
AleI	CACNNNNGTG	1 cut(s)	194
AluBI	AGCT	5 cut(s)	104, 136, 152, 479, 742
AluI	AGCT	5 cut(s)	104, 136, 152, 479, 742
Alw21I	GWGCWC	1 cut(s)	286
AlwI	GGATC	3 cut(s)	269, 282, 810
AoxI	GGCC	2 cut(s)	352, 724
ApeKI	GCWGC	2 cut(s)	4, 152
ApoI	RAATTY	1 cut(s)	252
AspLEI	GCGC	2 cut(s)	90, 389
AspS9I	GGNCC	4 cut(s)	244, 470, 725, 755
AsuHPI	GGTGA	1 cut(s)	608
AsuII	TTCGAA	1 cut(s)	139
AvaII	GGWCC	3 cut(s)	244, 470, 755
AxyI	CCTNAGG	1 cut(s)	549
BalI	TGGCCA	1 cut(s)	354
BamHI	GGATCC	1 cut(s)	274
Bbv12I	GWGCWC	1 cut(s)	286
BbvI	GCAGC	1 cut(s)	139
BccI	CCATC	1 cut(s)	434
BceAI	ACGGC	1 cut(s)	179
BcgI	CGANNNNNNTGC	2 cut(s)	173, 207
BciT130I	CCWGG	2 cut(s)	271, 356
BfaI	CTAG	1 cut(s)	107
BisI	GCNGC	3 cut(s)	5, 153, 385
BlsI	GCNGC	3 cut(s)	6, 154, 386
BmcAI	AGTACT	1 cut(s)	35
Bme1390I	CCNGG	2 cut(s)	271, 356
Bme18I	GGWCC	3 cut(s)	244, 470, 755
BmgT120I	GGNCC	4 cut(s)	244, 470, 725, 755
BmiI	GGNNCC	3 cut(s)	245, 246, 276
BmrFI	CCNGG	2 cut(s)	271, 356
BmsI	GCATC	5 cut(s)	242, 433, 534, 631, 709
BpmI	CTGGAG	1 cut(s)	197
Bpu14I	TTCGAA	1 cut(s)	139
BsaJI	CCNNGG	4 cut(s)	200, 270, 534, 758
BsaXI	ACNNNNNCTCC	2 cut(s)	23, 53
Bsc4I	CCNNNNNNNGG	1 cut(s)	201
Bse1I	ACTGG	1 cut(s)	632
Bse21I	CCTNAGG	1 cut(s)	549
BseBI	CCWGG	2 cut(s)	271, 356
BseDI	CCNNGG	4 cut(s)	200, 270, 534, 758
BseLI	CCNNNNNNNGG	1 cut(s)	201
BseMII	CTCAG	2 cut(s)	123, 563
BseNI	ACTGG	1 cut(s)	632
BseXI	GCAGC	1 cut(s)	139
Bsh1236I	CGCG	1 cut(s)	387
BshFI	GGCC	2 cut(s)	354, 726
BsiHKAI	GWGCWC	1 cut(s)	286
BslFI	GGGAC	1 cut(s)	257
BslI	CCNNNNNNNGG	1 cut(s)	201
BsmFI	GGGAC	1 cut(s)	257
BsnI	GGCC	2 cut(s)	354, 726
Bsp119I	TTCGAA	1 cut(s)	139
Bsp1286I	GDGCHC	1 cut(s)	286
Bsp1407I	TGTACA	1 cut(s)	39
Bsp143I	GATC	4 cut(s)	93, 172, 274, 802
Bsp19I	CCATGG	1 cut(s)	534
BspACI	CCGC	2 cut(s)	287, 385
BspANI	GGCC	2 cut(s)	354, 726
BspCNI	CTCAG	2 cut(s)	124, 562
BspFNI	CGCG	1 cut(s)	387
BspHI	TCATGA	1 cut(s)	418
BspLI	GGNNCC	3 cut(s)	245, 246, 276
BspPI	GGATC	3 cut(s)	269, 282, 810
BspT104I	TTCGAA	1 cut(s)	139
BsrGI	TGTACA	1 cut(s)	39
BsrI	ACTGG	1 cut(s)	632
BssECI	CCNNGG	4 cut(s)	200, 270, 534, 758
BssMI	GATC	4 cut(s)	93, 172, 274, 802
BssT1I	CCWWGG	2 cut(s)	200, 534
Bst2UI	CCWGG	2 cut(s)	271, 356
Bst4CI	ACNGT	2 cut(s)	69, 799
Bst6I	CTCTTC	1 cut(s)	105
BstAUI	TGTACA	1 cut(s)	39
BstBI	TTCGAA	1 cut(s)	139
BstDEI	CTNAG	3 cut(s)	132, 549, 588
BstDSI	CCRYGG	1 cut(s)	534
BstFNI	CGCG	1 cut(s)	387
BstHHI	GCGC	2 cut(s)	90, 389
BstKTI	GATC	4 cut(s)	96, 175, 277, 805
BstMBI	GATC	4 cut(s)	93, 172, 274, 802
BstMWI	GCNNNNNNNGC	1 cut(s)	57
BstNI	CCWGG	2 cut(s)	271, 356
BstSCI	CCNGG	2 cut(s)	269, 354
BstUI	CGCG	1 cut(s)	387
BstV1I	GCAGC	1 cut(s)	139
BstX2I	RGATCY	1 cut(s)	274
BstYI	RGATCY	1 cut(s)	274
Bsu36I	CCTNAGG	1 cut(s)	549
BsuRI	GGCC	2 cut(s)	354, 726
BtgI	CCRYGG	1 cut(s)	534
BtsI	GCAGTG	1 cut(s)	189
BtsIMutI	CAGTG	3 cut(s)	129, 189, 804
CciI	TCATGA	1 cut(s)	418
CfoI	GCGC	2 cut(s)	90, 389
Cfr13I	GGNCC	4 cut(s)	244, 470, 725, 755
Csp6I	GTAC	3 cut(s)	34, 40, 434
CviAII	CATG	4 cut(s)	419, 512, 535, 844
CviQI	GTAC	3 cut(s)	34, 40, 434
DdeI	CTNAG	3 cut(s)	132, 549, 588
DpnI	GATC	4 cut(s)	95, 174, 276, 804
DpnII	GATC	4 cut(s)	93, 172, 274, 802
DraI	TTTAAA	1 cut(s)	618
EaeI	YGGCCR	1 cut(s)	352
Eam1104I	CTCTTC	1 cut(s)	105
EarI	CTCTTC	1 cut(s)	105
Eco130I	CCWWGG	2 cut(s)	200, 534
Eco47I	GGWCC	3 cut(s)	244, 470, 755
Eco57I	CTGAAG	1 cut(s)	764
Eco81I	CCTNAGG	1 cut(s)	549
EcoO109I	RGGNCCY	2 cut(s)	244, 725
EcoRII	CCWGG	2 cut(s)	269, 354
EcoT14I	CCWWGG	2 cut(s)	200, 534
ErhI	CCWWGG	2 cut(s)	200, 534
FaeI	CATG	4 cut(s)	422, 515, 538, 847
FalI	AAGNNNNNCTT	6 cut(s)	20, 52, 141, 173, 611, 643
FaqI	GGGAC	1 cut(s)	257
FatI	CATG	4 cut(s)	418, 511, 534, 843
Fnu4HI	GCNGC	3 cut(s)	5, 153, 385
Fsp4HI	GCNGC	3 cut(s)	5, 153, 385
FspBI	CTAG	1 cut(s)	107
GlaI	GCGC	2 cut(s)	89, 388
GluI	GCNGC	3 cut(s)	5, 153, 385
GsuI	CTGGAG	1 cut(s)	197
HaeIII	GGCC	2 cut(s)	354, 726
HhaI	GCGC	2 cut(s)	90, 389
Hin1II	CATG	4 cut(s)	422, 515, 538, 847
Hin6I	GCGC	2 cut(s)	88, 387
HinP1I	GCGC	2 cut(s)	88, 387
HincII	GTYRAC	1 cut(s)	24
HindII	GTYRAC	1 cut(s)	24
HinfI	GANTC	2 cut(s)	343, 568
HpaI	GTTAAC	1 cut(s)	24
HphI	GGTGA	1 cut(s)	608
Hpy166II	GTNNAC	2 cut(s)	24, 434
Hpy188I	TCNGA	7 cut(s)	12, 98, 279, 367, 682, 807, 836
Hpy188III	TCNNGA	5 cut(s)	107, 161, 176, 419, 583
Hpy8I	GTNNAC	2 cut(s)	24, 434
Hpy99I	CGWCG	1 cut(s)	12
HpyAV	CCTTC	5 cut(s)	22, 50, 167, 470, 739
HpyCH4III	ACNGT	2 cut(s)	69, 799
HpyCH4V	TGCA	3 cut(s)	227, 302, 332
HpyF10VI	GCNNNNNNNGC	1 cut(s)	57
HpyF3I	CTNAG	3 cut(s)	132, 549, 588
Hsp92II	CATG	4 cut(s)	422, 515, 538, 847
HspAI	GCGC	2 cut(s)	88, 387
KflI	GGGWCCC	1 cut(s)	244
KspAI	GTTAAC	1 cut(s)	24
Kzo9I	GATC	4 cut(s)	93, 172, 274, 802
LmnI	GCTCC	1 cut(s)	289
Lsp1109I	GCAGC	1 cut(s)	139
LweI	GCATC	5 cut(s)	242, 433, 534, 631, 709
MaeI	CTAG	1 cut(s)	107
MaeIII	GTNAC	2 cut(s)	204, 502
MalI	GATC	4 cut(s)	95, 174, 276, 804
MboI	GATC	4 cut(s)	93, 172, 274, 802
MboII	GAAGA	3 cut(s)	94, 122, 176
MflI	RGATCY	1 cut(s)	274
MhlI	GDGCHC	1 cut(s)	286
MlsI	TGGCCA	1 cut(s)	354
MluCI	AATT	6 cut(s)	15, 168, 252, 296, 577, 767
MluNI	TGGCCA	1 cut(s)	354
MmeI	TCCRAC	1 cut(s)	497
Mox20I	TGGCCA	1 cut(s)	354
MscI	TGGCCA	1 cut(s)	354
MseI	TTAA	4 cut(s)	23, 617, 780, 786
MslI	CAYNNNNRTG	4 cut(s)	194, 213, 429, 708
Msp20I	TGGCCA	1 cut(s)	354
MspA1I	CMGCKG	1 cut(s)	289
MspR9I	CCNGG	2 cut(s)	271, 356
MvaI	CCWGG	2 cut(s)	271, 356
MvnI	CGCG	1 cut(s)	387
MwoI	GCNNNNNNNGC	1 cut(s)	57
NcoI	CCATGG	1 cut(s)	534
NdeII	GATC	4 cut(s)	93, 172, 274, 802
NlaIII	CATG	4 cut(s)	422, 515, 538, 847
NlaIV	GGNNCC	3 cut(s)	245, 246, 276
NmuCI	GTSAC	1 cut(s)	204
NspV	TTCGAA	1 cut(s)	139
OliI	CACNNNNGTG	1 cut(s)	194
PagI	TCATGA	1 cut(s)	418
PfeI	GAWTC	2 cut(s)	343, 568
PkrI	GCNGC	3 cut(s)	6, 154, 386
PpuMI	RGGWCCY	1 cut(s)	244
PsiI	TTATAA	1 cut(s)	452
Psp5II	RGGWCCY	1 cut(s)	244
Psp6I	CCWGG	2 cut(s)	269, 354
PspGI	CCWGG	2 cut(s)	269, 354
PspN4I	GGNNCC	3 cut(s)	245, 246, 276
PspPI	GGNCC	4 cut(s)	244, 470, 725, 755
PspPPI	RGGWCCY	1 cut(s)	244
PsuI	RGATCY	1 cut(s)	274
RsaI	GTAC	3 cut(s)	35, 41, 435
RsaNI	GTAC	3 cut(s)	34, 40, 434
RseI	CAYNNNNRTG	4 cut(s)	194, 213, 429, 708
SaqAI	TTAA	4 cut(s)	23, 617, 780, 786
SatI	GCNGC	3 cut(s)	5, 153, 385
Sau3AI	GATC	4 cut(s)	93, 172, 274, 802
Sau96I	GGNCC	4 cut(s)	244, 470, 725, 755
ScaI	AGTACT	1 cut(s)	35
ScrFI	CCNGG	2 cut(s)	271, 356
SduI	GDGCHC	1 cut(s)	286
SfaNI	GCATC	5 cut(s)	242, 433, 534, 631, 709
SfuI	TTCGAA	1 cut(s)	139
SinI	GGWCC	3 cut(s)	244, 470, 755
SmiMI	CAYNNNNRTG	4 cut(s)	194, 213, 429, 708
Sse9I	AATT	6 cut(s)	15, 168, 252, 296, 577, 767
SsiI	CCGC	2 cut(s)	287, 385
SspI	AATATT	1 cut(s)	613
SspMI	CTAG	1 cut(s)	107
StyD4I	CCNGG	2 cut(s)	269, 354
StyI	CCWWGG	2 cut(s)	200, 534
TaaI	ACNGT	2 cut(s)	69, 799
TaqI	TCGA	1 cut(s)	139
TasI	AATT	6 cut(s)	15, 168, 252, 296, 577, 767
TatI	WGTACW	2 cut(s)	33, 39
TauI	GCSGC	1 cut(s)	387
TfiI	GAWTC	2 cut(s)	343, 568
Tru1I	TTAA	4 cut(s)	23, 617, 780, 786
Tru9I	TTAA	4 cut(s)	23, 617, 780, 786
TscAI	CASTG	3 cut(s)	136, 196, 804
TseFI	GTSAC	1 cut(s)	204
TseI	GCWGC	2 cut(s)	4, 152
Tsp45I	GTSAC	1 cut(s)	204
TspDTI	ATGAA	5 cut(s)	356, 407, 681, 825, 860
TspGWI	ACGGA	2 cut(s)	724, 735
TspRI	CASTG	3 cut(s)	136, 196, 804
VpaK11BI	GGWCC	3 cut(s)	244, 470, 755
XapI	RAATTY	1 cut(s)	252
XbaI	TCTAGA	1 cut(s)	106
XcmI	CCANNNNNNNNNTGG	1 cut(s)	464
XspI	CTAG	1 cut(s)	107
ZrmI	AGTACT	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.