Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0002667

Physical Location & Seq

Genomic Coordinates Reverse (-)

11781161 .. 11786930

Gene Structure 5770 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G084800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGAAGAGAAAAAATATTAGATTGCTGAAAGAATATTTGTACAGAAAGAGCTTAGAAGGCAAAGAACGCCTTCTCTACGAGAACAAGCGCAAGATTAGAGAAGCTCTGCAAGAGGGGAAACCGATTCCCACTGAGCTTCGGAATGAAGAGGCTGAGCTTCGTCGAGAAATCGATCTCGAAGATGAGAACACTGCTGTCCCAAGGACACATATCGACGATGAGTATGCAAAAGCAGCTGAAAGAGATCCCAAGATTTTGATCACTACTTCCCGGAATCCAAGTGCTCCGCTAGTACAATTTGCAAAGGAACTGAAACTTGTTTTTCCTAATGCACAACAAATGAACCGTGGTGGCCAGGTTATTTCTGAAATTATTGAAACTTGCCGTGCACATGATTTTACAGATGTTGTTTTGGTTCATGAAAATCGTGGCGTACCTGACGGTTTGTTTATAATCCACCTTCCTTTTGGTCCAACGGCGTTTTTTGAACTGCGCAATGTGGTTACAAGACATGACATCAAGGACAAGAAAGCTATGGGAACAATGCCGCAGGTTTATCCACATGTGATTCTTGACAATTTCACGACTAAGTTGGGTGAGAGAACAGCAAATATTTTGAAGCATCTCTTTCCAGTGCCAAAGCCAGATACGAAGCGCATAATCACTTTCGCCAATCAGTCAGACTATATTTCATTCAGGCATCATACTTATGGGAAGCATGGAGGTCCTAAATCCATCGTTCTGGAGGAGATTGGTCCTCGGTTTGAAATGAGGCTTTTCAAGATAAAGTTGGGAACACTGGATCAGACTGAAGCCCAGGATGAATGGGTCTTCAAGCCATACATGAACACAGCCAAGAAACAGAAGTTTATAGGGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

No domains found.

Protein Analysis

294

Amino Acids

34.03

Weight (kDa)

9.34

Isoelectric Point (pI)

38.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002667)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63780
fragaria_vesca	FvH4_7g02470 FvH4_7g02470 FvH4_7g02470 FvH4_7g02470 FvH4_7g02470
malus_domestica	MD05G1030400.v1.1 MD10G1031800.v1.1
prunus_persica	Prupe.2G030400_v2.0.a1 Prupe.2G030400_v2.0.a1 Prupe.2G030400_v2.0.a1 Prupe.8G084800_v2.0.a1 Prupe.8G084800_v2.0.a1
pyrus_communis	pycom05g02160 pycom10g02010
rosa_chinensis	RchiOBHm_Chr1g0319831 RchiOBHm_Chr1g0320641 RchiOBHm_Chr1g0320961 RchiOBHm_Chr1g0321121
rosa_laevigata	RLG00000030450
rosa_multiflora	Rmu_sc0004627.1_g000009 Rmu_sc0004660.1_g000006 Rmu_sc0007977.1_g000009 Rmu_sc0008752.1_g000006
rosa_roxburghii	Rroxscaffold_160G00433730 Rroxscaffold_4G00328080
rosa_rugosa	Rorug01G0031000 Rorug01G0031100
rosa_samantha	Rh1AG043100 Rh1BG039800 Rh1CG043200 Rh1CG045200 Rh1DG022700 Rh1DG024200 Rh1DG025900 Rh1DG049600 Rh1DG049800
rosa_wichuraiana	Rw0G001080 Rw1G003660 Rw1G003780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	452
Acc16I	TGCGCA	1 cut(s)	494
Acc36I	ACCTGC	1 cut(s)	541
AciI	CCGC	2 cut(s)	287, 548
AclWI	GGATC	2 cut(s)	239, 810
AcoI	YGGCCR	1 cut(s)	352
AcuI	CTGAAG	1 cut(s)	831
AfaI	GTAC	3 cut(s)	41, 294, 435
AflIII	ACRYGT	1 cut(s)	562
AgsI	TTSAA	6 cut(s)	377, 488, 619, 767, 781, 835
AjnI	CCWGG	2 cut(s)	354, 816
AluBI	AGCT	6 cut(s)	51, 104, 136, 157, 236, 533
AluI	AGCT	6 cut(s)	51, 104, 136, 157, 236, 533
Alw21I	GWGCWC	2 cut(s)	286, 391
Alw44I	GTGCAC	1 cut(s)	387
AlwI	GGATC	2 cut(s)	239, 810
AoxI	GGCC	1 cut(s)	352
ApaLI	GTGCAC	1 cut(s)	387
ApeKI	GCWGC	1 cut(s)	233
Asp700I	GAANNNNTTC	1 cut(s)	69
AspLEI	GCGC	3 cut(s)	90, 495, 657
AspS9I	GGNCC	3 cut(s)	470, 725, 755
AsuC2I	CCSGG	1 cut(s)	271
AsuHPI	GGTGA	1 cut(s)	608
AvaII	GGWCC	3 cut(s)	470, 725, 755
BaeGI	GKGCMC	1 cut(s)	391
BalI	TGGCCA	1 cut(s)	354
BbsI	GAAGAC	1 cut(s)	823
Bbv12I	GWGCWC	2 cut(s)	286, 391
BbvI	GCAGC	1 cut(s)	245
BccI	CCATC	1 cut(s)	743
BceAI	ACGGC	2 cut(s)	369, 492
BcgI	CGANNNNNNTGC	2 cut(s)	206, 240
BciT130I	CCWGG	2 cut(s)	356, 818
BclI	TGATCA	1 cut(s)	258
BcnI	CCSGG	1 cut(s)	271
BfaI	CTAG	1 cut(s)	290
BfuAI	ACCTGC	1 cut(s)	541
BisI	GCNGC	2 cut(s)	234, 548
BlpI	GCTNAGC	1 cut(s)	153
BlsI	GCNGC	2 cut(s)	235, 549
Bme1390I	CCNGG	3 cut(s)	271, 356, 818
Bme18I	GGWCC	3 cut(s)	470, 725, 755
BmgT120I	GGNCC	3 cut(s)	470, 725, 755
BmrFI	CCNGG	3 cut(s)	271, 356, 818
BmsI	GCATC	2 cut(s)	631, 709
BpiI	GAAGAC	1 cut(s)	823
BpmI	CTGGAG	1 cut(s)	764
Bpu1102I	GCTNAGC	1 cut(s)	153
BpuMI	CCSGG	1 cut(s)	271
Bsa29I	ATCGAT	1 cut(s)	171
BsaBI	GATNNNNATC	1 cut(s)	257
BsaJI	CCNNGG	4 cut(s)	200, 346, 758, 816
Bse1I	ACTGG	2 cut(s)	632, 804
Bse3DI	GCAATG	1 cut(s)	502
Bse8I	GATNNNNATC	1 cut(s)	257
BseBI	CCWGG	2 cut(s)	356, 818
BseCI	ATCGAT	1 cut(s)	171
BseDI	CCNNGG	4 cut(s)	200, 346, 758, 816
BseGI	GGATG	1 cut(s)	826
BseJI	GATNNNNATC	1 cut(s)	257
BseMI	GCAATG	1 cut(s)	502
BseMII	CTCAG	2 cut(s)	123, 144
BseNI	ACTGG	2 cut(s)	632, 804
BseRI	GAGGAG	1 cut(s)	761
BseSI	GKGCMC	1 cut(s)	391
BseXI	GCAGC	1 cut(s)	245
BshFI	GGCC	1 cut(s)	354
BshVI	ATCGAT	1 cut(s)	171
BsiHKAI	GWGCWC	2 cut(s)	286, 391
BsiSI	CCGG	1 cut(s)	271
BslFI	GGGAC	1 cut(s)	182
BsmFI	GGGAC	1 cut(s)	182
BsnI	GGCC	1 cut(s)	354
Bsp1286I	GDGCHC	2 cut(s)	286, 391
Bsp1407I	TGTACA	1 cut(s)	39
Bsp143I	GATC	4 cut(s)	172, 244, 258, 802
Bsp1720I	GCTNAGC	1 cut(s)	153
BspACI	CCGC	2 cut(s)	287, 548
BspANI	GGCC	1 cut(s)	354
BspCNI	CTCAG	2 cut(s)	124, 145
BspDI	ATCGAT	1 cut(s)	171
BspHI	TCATGA	1 cut(s)	418
BspMI	ACCTGC	1 cut(s)	541
BspPI	GGATC	2 cut(s)	239, 810
BsrDI	GCAATG	1 cut(s)	502
BsrGI	TGTACA	1 cut(s)	39
BsrI	ACTGG	2 cut(s)	632, 804
BssECI	CCNNGG	4 cut(s)	200, 346, 758, 816
BssMI	GATC	4 cut(s)	172, 244, 258, 802
BssT1I	CCWWGG	1 cut(s)	200
Bst2UI	CCWGG	2 cut(s)	356, 818
Bst4CI	ACNGT	2 cut(s)	347, 443
Bst6I	CTCTTC	1 cut(s)	141
BstAUI	TGTACA	1 cut(s)	39
BstDEI	CTNAG	4 cut(s)	52, 132, 153, 588
BstDSI	CCRYGG	1 cut(s)	346
BstF5I	GGATG	1 cut(s)	826
BstHHI	GCGC	3 cut(s)	90, 495, 657
BstKTI	GATC	4 cut(s)	175, 247, 261, 805
BstMBI	GATC	4 cut(s)	172, 244, 258, 802
BstMWI	GCNNNNNNNGC	3 cut(s)	57, 66, 233
BstNI	CCWGG	2 cut(s)	356, 818
BstNSI	RCATGY	1 cut(s)	566
BstSCI	CCNGG	3 cut(s)	269, 354, 816
BstSLI	GKGCMC	1 cut(s)	391
BstV1I	GCAGC	1 cut(s)	245
BstV2I	GAAGAC	1 cut(s)	823
BstX2I	RGATCY	1 cut(s)	244
BstXI	CCANNNNNNTGG	1 cut(s)	742
BstYI	RGATCY	1 cut(s)	244
Bsu15I	ATCGAT	1 cut(s)	171
BsuRI	GGCC	1 cut(s)	354
BsuTUI	ATCGAT	1 cut(s)	171
BtgI	CCRYGG	1 cut(s)	346
BtsCI	GGATG	1 cut(s)	826
BtsI	GCAGTG	1 cut(s)	189
BtsIMutI	CAGTG	4 cut(s)	129, 189, 639, 797
BveI	ACCTGC	1 cut(s)	541
CciI	TCATGA	1 cut(s)	418
CfoI	GCGC	3 cut(s)	90, 495, 657
Cfr13I	GGNCC	3 cut(s)	470, 725, 755
ClaI	ATCGAT	1 cut(s)	171
Csp6I	GTAC	3 cut(s)	40, 293, 434
CviAII	CATG	6 cut(s)	392, 419, 512, 563, 719, 844
CviQI	GTAC	3 cut(s)	40, 293, 434
DdeI	CTNAG	4 cut(s)	52, 132, 153, 588
DpnI	GATC	4 cut(s)	174, 246, 260, 804
DpnII	GATC	4 cut(s)	172, 244, 258, 802
EaeI	YGGCCR	1 cut(s)	352
Eam1104I	CTCTTC	1 cut(s)	141
EarI	CTCTTC	1 cut(s)	141
Eco130I	CCWWGG	1 cut(s)	200
Eco47I	GGWCC	3 cut(s)	470, 725, 755
Eco57I	CTGAAG	1 cut(s)	831
EcoO109I	RGGNCCY	1 cut(s)	725
EcoRII	CCWGG	2 cut(s)	354, 816
EcoT14I	CCWWGG	1 cut(s)	200
ErhI	CCWWGG	1 cut(s)	200
FaeI	CATG	6 cut(s)	395, 422, 515, 566, 722, 847
FalI	AAGNNNNNCTT	4 cut(s)	54, 86, 611, 643
FaqI	GGGAC	1 cut(s)	182
FatI	CATG	6 cut(s)	391, 418, 511, 562, 718, 843
FbaI	TGATCA	1 cut(s)	258
Fnu4HI	GCNGC	2 cut(s)	234, 548
FokI	GGATG	1 cut(s)	833
Fsp4HI	GCNGC	2 cut(s)	234, 548
FspBI	CTAG	1 cut(s)	290
FspI	TGCGCA	1 cut(s)	494
GlaI	GCGC	3 cut(s)	89, 494, 656
GluI	GCNGC	2 cut(s)	234, 548
GsuI	CTGGAG	1 cut(s)	764
HaeIII	GGCC	1 cut(s)	354
HapII	CCGG	1 cut(s)	271
HhaI	GCGC	3 cut(s)	90, 495, 657
Hin1II	CATG	6 cut(s)	395, 422, 515, 566, 722, 847
Hin6I	GCGC	3 cut(s)	88, 493, 655
HinP1I	GCGC	3 cut(s)	88, 493, 655
HinfI	GANTC	3 cut(s)	124, 274, 568
HpaII	CCGG	1 cut(s)	271
HphI	GGTGA	1 cut(s)	608
Hpy166II	GTNNAC	1 cut(s)	389
Hpy188I	TCNGA	4 cut(s)	141, 367, 682, 807
Hpy188III	TCNNGA	7 cut(s)	164, 176, 419, 572, 583, 743, 781
Hpy8I	GTNNAC	1 cut(s)	389
Hpy99I	CGWCG	2 cut(s)	165, 218
HpyAV	CCTTC	3 cut(s)	50, 80, 470
HpyCH4III	ACNGT	2 cut(s)	347, 443
HpyCH4V	TGCA	5 cut(s)	109, 227, 302, 332, 389
HpyF10VI	GCNNNNNNNGC	3 cut(s)	57, 66, 233
HpyF3I	CTNAG	4 cut(s)	52, 132, 153, 588
Hsp92II	CATG	6 cut(s)	395, 422, 515, 566, 722, 847
HspAI	GCGC	3 cut(s)	88, 493, 655
Ksp22I	TGATCA	1 cut(s)	258
Kzo9I	GATC	4 cut(s)	172, 244, 258, 802
LmnI	GCTCC	1 cut(s)	289
Lsp1109I	GCAGC	1 cut(s)	245
LweI	GCATC	2 cut(s)	631, 709
MaeI	CTAG	1 cut(s)	290
MaeIII	GTNAC	1 cut(s)	502
MalI	GATC	4 cut(s)	174, 246, 260, 804
MboI	GATC	4 cut(s)	172, 244, 258, 802
MboII	GAAGA	4 cut(s)	16, 158, 191, 823
MflI	RGATCY	1 cut(s)	244
MhlI	GDGCHC	2 cut(s)	286, 391
MlsI	TGGCCA	1 cut(s)	354
MluCI	AATT	3 cut(s)	296, 369, 577
MluNI	TGGCCA	1 cut(s)	354
MmeI	TCCRAC	1 cut(s)	497
MnlI	CCTC	6 cut(s)	106, 142, 716, 739, 765, 768
Mox20I	TGGCCA	1 cut(s)	354
MroXI	GAANNNNTTC	1 cut(s)	69
MscI	TGGCCA	1 cut(s)	354
MslI	CAYNNNNRTG	1 cut(s)	708
Msp20I	TGGCCA	1 cut(s)	354
MspA1I	CMGCKG	1 cut(s)	236
MspI	CCGG	1 cut(s)	271
MspR9I	CCNGG	3 cut(s)	271, 356, 818
MvaI	CCWGG	2 cut(s)	356, 818
MwoI	GCNNNNNNNGC	3 cut(s)	57, 66, 233
NciI	CCSGG	1 cut(s)	271
NdeII	GATC	4 cut(s)	172, 244, 258, 802
NlaIII	CATG	6 cut(s)	395, 422, 515, 566, 722, 847
NsbI	TGCGCA	1 cut(s)	494
NspI	RCATGY	1 cut(s)	566
PagI	TCATGA	1 cut(s)	418
PciI	ACATGT	1 cut(s)	562
PdmI	GAANNNNTTC	1 cut(s)	69
PfeI	GAWTC	3 cut(s)	124, 274, 568
PfoI	TCCNGGA	1 cut(s)	269
PkrI	GCNGC	2 cut(s)	235, 549
PpuMI	RGGWCCY	1 cut(s)	725
PscI	ACATGT	1 cut(s)	562
PsiI	TTATAA	1 cut(s)	452
Psp5II	RGGWCCY	1 cut(s)	725
Psp6I	CCWGG	2 cut(s)	354, 816
PspGI	CCWGG	2 cut(s)	354, 816
PspPI	GGNCC	3 cut(s)	470, 725, 755
PspPPI	RGGWCCY	1 cut(s)	725
PsuI	RGATCY	1 cut(s)	244
PvuII	CAGCTG	1 cut(s)	236
RsaI	GTAC	3 cut(s)	41, 294, 435
RsaNI	GTAC	3 cut(s)	40, 293, 434
RseI	CAYNNNNRTG	1 cut(s)	708
SatI	GCNGC	2 cut(s)	234, 548
Sau3AI	GATC	4 cut(s)	172, 244, 258, 802
Sau96I	GGNCC	3 cut(s)	470, 725, 755
ScrFI	CCNGG	3 cut(s)	271, 356, 818
SduI	GDGCHC	2 cut(s)	286, 391
SfaNI	GCATC	2 cut(s)	631, 709
SinI	GGWCC	3 cut(s)	470, 725, 755
SmiMI	CAYNNNNRTG	1 cut(s)	708
Sse9I	AATT	3 cut(s)	296, 369, 577
SsiI	CCGC	2 cut(s)	287, 548
SspI	AATATT	3 cut(s)	16, 35, 613
SspMI	CTAG	1 cut(s)	290
StyD4I	CCNGG	3 cut(s)	269, 354, 816
StyI	CCWWGG	1 cut(s)	200
TaaI	ACNGT	2 cut(s)	347, 443
TaqI	TCGA	4 cut(s)	163, 171, 177, 213
TasI	AATT	3 cut(s)	296, 369, 577
TatI	WGTACW	2 cut(s)	39, 292
TauI	GCSGC	1 cut(s)	550
TfiI	GAWTC	3 cut(s)	124, 274, 568
TscAI	CASTG	4 cut(s)	136, 196, 639, 804
TseI	GCWGC	1 cut(s)	233
TspDTI	ATGAA	8 cut(s)	17, 159, 356, 407, 435, 681, 837, 860
TspRI	CASTG	4 cut(s)	136, 196, 639, 804
VneI	GTGCAC	1 cut(s)	387
VpaK11BI	GGWCC	3 cut(s)	470, 725, 755
XceI	RCATGY	1 cut(s)	566
XcmI	CCANNNNNNNNNTGG	1 cut(s)	464
XmnI	GAANNNNTTC	1 cut(s)	69
XspI	CTAG	1 cut(s)	290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.