pycom10g02010

U3 small nucleolar ribonucleoprotein protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0002667
Physical Location & Seq
Forward (+)
2112590 .. 2116458
3869 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g02010.1

Sequence Viewer

Length: 882 bp
ATGCTGCGCCGAAAAATTAGGTTGACGAAGGAGTACTTGTACAGAAAGAGCTTGGAAGGCAAACAACGCTTGCTCTATGAGAAGAAGCGCAAGATCAAAGAAGCTCTAGAAGAGGGGAAACCGATACCCACCGAGCTTCGGAATGAGGAGGCTGCTCTTCGTCAAGAGATCGATTTAGAGGACGAAAACACTGCCGTCCCGAGGTCACATATAGATGACGAGTATGCAAACGCAACTCAGAGAGATCCGAAAATTTTGCTGACTACTTCCCGGGATCCGAGTGCTCCTCTTATACAATTTGCTAAGGAACTGAAACTCGTTTTTCCCAATGCGCAACAAATGAATCGTGGTGGTCAGGTTATTTCTGAAATTATTGAAACATGCCGTTCACACGAATTTACGGATGTTGTGCTGGTTCATGAACATCGTGGTGTACCAGATGGTTTGATTATAAGCCACCTTCCTTTTGGTCCAACAGCGTATTTTCAACTACTCAATGTGGTCACAAGACATGACATCAAAGACAAGAAGGCCATGGGAACGATGCCTCAGGTTTATCCACACGTGATACTTGACAATTTCACGACCAAGTTGGGTGAGAGGGCAGCAAATATTTTAAAGCATCTCTTTCCAGTGCCAAAGCCGGATACAAAACGCATAATCACTTTTGCCAATCGCGCTGACTACATTTCATTCAGGCACCATACTTATGAGAAGCCTGGAGGTCCTAAATCTATTGAGCTGAAGGAGATCGGTCCTCGGTTTGAATTGAGGCTTTTTAAGATAAGGTTAGGAACAATGGATCAGGATGAAGCCCAGAATGAATGGGTCATCAGACCATATATGAACACAGCCAAGAAACAGAAGTATATGGGGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
Brix

Protein Analysis

294

Amino Acids

34.04

Weight (kDa)

9.33

Isoelectric Point (pI)

41.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Brix PF04427 90 - 261 5.4e-27 Brix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 452
Acc16I TGCGCA 1 cut(s) 333
AccB1I GGYRCC 1 cut(s) 699
AccII CGCG 1 cut(s) 678
AclWI GGATC 4 cut(s) 239, 269, 282, 810
AcsI RAATTY 2 cut(s) 252, 395
AcuI CTGAAG 1 cut(s) 764
AcvI CACGTG 1 cut(s) 565
AfaI GTAC 3 cut(s) 35, 41, 435
AfiI CCNNNNNNNGG 2 cut(s) 138, 201
AflIII ACRYGT 1 cut(s) 562
AgsI TTSAA 3 cut(s) 377, 488, 767
AjnI CCWGG 1 cut(s) 718
AluBI AGCT 4 cut(s) 51, 104, 136, 742
AluI AGCT 4 cut(s) 51, 104, 136, 742
Alw21I GWGCWC 1 cut(s) 286
AlwI GGATC 4 cut(s) 239, 269, 282, 810
Ama87I CYCGRG 2 cut(s) 199, 270
AoxI GGCC 1 cut(s) 531
ApeKI GCWGC 3 cut(s) 4, 152, 605
ApoI RAATTY 2 cut(s) 252, 395
AspLEI GCGC 4 cut(s) 9, 90, 334, 680
AspS9I GGNCC 3 cut(s) 470, 725, 755
AsuC2I CCSGG 2 cut(s) 271, 272
AsuHPI GGTGA 1 cut(s) 608
AvaI CYCGRG 2 cut(s) 199, 270
AvaII GGWCC 3 cut(s) 470, 725, 755
AxyI CCTNAGG 1 cut(s) 549
BamHI GGATCC 1 cut(s) 274
BanI GGYRCC 1 cut(s) 699
BbrPI CACGTG 1 cut(s) 565
Bbv12I GWGCWC 1 cut(s) 286
BbvI GCAGC 2 cut(s) 139, 617
BccI CCATC 1 cut(s) 434
BceAI ACGGC 2 cut(s) 179, 369
BcgI CGANNNNNNTGC 4 cut(s) 173, 207, 238, 272
BciT130I CCWGG 1 cut(s) 720
BciVI GTATCC 1 cut(s) 640
BcnI CCSGG 2 cut(s) 271, 272
BfaI CTAG 1 cut(s) 107
BfuI GTATCC 1 cut(s) 640
BisI GCNGC 3 cut(s) 5, 153, 606
BlsI GCNGC 3 cut(s) 6, 154, 607
BmcAI AGTACT 1 cut(s) 35
Bme1390I CCNGG 3 cut(s) 271, 272, 720
Bme18I GGWCC 3 cut(s) 470, 725, 755
BmeT110I CYCGRG 2 cut(s) 199, 270
BmgT120I GGNCC 3 cut(s) 470, 725, 755
BmiI GGNNCC 2 cut(s) 276, 701
BmrFI CCNGG 3 cut(s) 271, 272, 720
BmsI GCATC 2 cut(s) 534, 631
BplI GAGNNNNNCTC 2 cut(s) 271, 303
BpmI CTGGAG 1 cut(s) 741
Bpu10I CCTNAGC 1 cut(s) 303
BpuMI CCSGG 2 cut(s) 271, 272
Bsa29I ATCGAT 1 cut(s) 171
BsaAI YACGTR 1 cut(s) 565
BsaJI CCNNGG 4 cut(s) 200, 270, 534, 758
BsaXI ACNNNNNCTCC 2 cut(s) 23, 53
Bsc4I CCNNNNNNNGG 2 cut(s) 138, 201
Bse1I ACTGG 1 cut(s) 632
Bse21I CCTNAGG 1 cut(s) 549
BseBI CCWGG 1 cut(s) 720
BseCI ATCGAT 1 cut(s) 171
BseDI CCNNGG 4 cut(s) 200, 270, 534, 758
BseGI GGATG 2 cut(s) 409, 814
BseLI CCNNNNNNNGG 2 cut(s) 138, 201
BseMII CTCAG 2 cut(s) 251, 563
BseNI ACTGG 1 cut(s) 632
BseRI GAGGAG 2 cut(s) 161, 276
BseXI GCAGC 2 cut(s) 139, 617
Bsh1236I CGCG 1 cut(s) 678
BshFI GGCC 1 cut(s) 533
BshNI GGYRCC 1 cut(s) 699
BshVI ATCGAT 1 cut(s) 171
BsiHKAI GWGCWC 1 cut(s) 286
BsiHKCI CYCGRG 2 cut(s) 199, 270
BsiSI CCGG 2 cut(s) 271, 644
BslFI GGGAC 1 cut(s) 182
BslI CCNNNNNNNGG 2 cut(s) 138, 201
BsmFI GGGAC 1 cut(s) 182
BsnI GGCC 1 cut(s) 533
BsoBI CYCGRG 2 cut(s) 199, 270
Bsp1286I GDGCHC 1 cut(s) 286
Bsp1407I TGTACA 1 cut(s) 39
Bsp143I GATC 6 cut(s) 93, 168, 244, 274, 750, 802
Bsp19I CCATGG 1 cut(s) 534
BspANI GGCC 1 cut(s) 533
BspCNI CTCAG 2 cut(s) 250, 562
BspDI ATCGAT 1 cut(s) 171
BspFNI CGCG 1 cut(s) 678
BspHI TCATGA 1 cut(s) 418
BspLI GGNNCC 2 cut(s) 276, 701
BspPI GGATC 4 cut(s) 239, 269, 282, 810
BspQI GCTCTTC 1 cut(s) 162
BspT107I GGYRCC 1 cut(s) 699
BsrGI TGTACA 1 cut(s) 39
BsrI ACTGG 1 cut(s) 632
BssECI CCNNGG 4 cut(s) 200, 270, 534, 758
BssMI GATC 6 cut(s) 93, 168, 244, 274, 750, 802
BssT1I CCWWGG 1 cut(s) 534
Bst2UI CCWGG 1 cut(s) 720
Bst6I CTCTTC 2 cut(s) 105, 162
BstAUI TGTACA 1 cut(s) 39
BstBAI YACGTR 1 cut(s) 565
BstC8I GCNNGC 1 cut(s) 71
BstDEI CTNAG 3 cut(s) 237, 303, 549
BstDSI CCRYGG 1 cut(s) 534
BstF5I GGATG 2 cut(s) 409, 814
BstFNI CGCG 1 cut(s) 678
BstHHI GCGC 4 cut(s) 9, 90, 334, 680
BstKTI GATC 6 cut(s) 96, 171, 247, 277, 753, 805
BstMBI GATC 6 cut(s) 93, 168, 244, 274, 750, 802
BstMWI GCNNNNNNNGC 3 cut(s) 57, 66, 677
BstNI CCWGG 1 cut(s) 720
BstNSI RCATGY 1 cut(s) 384
BstSCI CCNGG 3 cut(s) 269, 270, 718
BstUI CGCG 1 cut(s) 678
BstV1I GCAGC 2 cut(s) 139, 617
BstX2I RGATCY 2 cut(s) 244, 274
BstYI RGATCY 2 cut(s) 244, 274
Bsu15I ATCGAT 1 cut(s) 171
Bsu36I CCTNAGG 1 cut(s) 549
BsuI GTATCC 1 cut(s) 640
BsuRI GGCC 1 cut(s) 533
BsuTUI ATCGAT 1 cut(s) 171
BtgI CCRYGG 1 cut(s) 534
BtsCI GGATG 2 cut(s) 409, 814
BtsI GCAGTG 1 cut(s) 189
BtsIMutI CAGTG 2 cut(s) 189, 639
Cac8I GCNNGC 1 cut(s) 71
CciI TCATGA 1 cut(s) 418
CfoI GCGC 4 cut(s) 9, 90, 334, 680
Cfr13I GGNCC 3 cut(s) 470, 725, 755
Cfr9I CCCGGG 1 cut(s) 270
ClaI ATCGAT 1 cut(s) 171
Csp6I GTAC 3 cut(s) 34, 40, 434
CviAII CATG 4 cut(s) 381, 419, 512, 535
CviQI GTAC 3 cut(s) 34, 40, 434
DdeI CTNAG 3 cut(s) 237, 303, 549
DpnI GATC 6 cut(s) 95, 170, 246, 276, 752, 804
DpnII GATC 6 cut(s) 93, 168, 244, 274, 750, 802
DraI TTTAAA 1 cut(s) 618
Eam1104I CTCTTC 2 cut(s) 105, 162
EarI CTCTTC 2 cut(s) 105, 162
Eco130I CCWWGG 1 cut(s) 534
Eco47I GGWCC 3 cut(s) 470, 725, 755
Eco57I CTGAAG 1 cut(s) 764
Eco72I CACGTG 1 cut(s) 565
Eco81I CCTNAGG 1 cut(s) 549
Eco88I CYCGRG 2 cut(s) 199, 270
EcoO109I RGGNCCY 1 cut(s) 725
EcoRII CCWGG 1 cut(s) 718
EcoT14I CCWWGG 1 cut(s) 534
ErhI CCWWGG 1 cut(s) 534
FaeI CATG 4 cut(s) 384, 422, 515, 538
FalI AAGNNNNNCTT 4 cut(s) 20, 52, 611, 643
FaqI GGGAC 1 cut(s) 182
FatI CATG 4 cut(s) 380, 418, 511, 534
Fnu4HI GCNGC 3 cut(s) 5, 153, 606
FokI GGATG 2 cut(s) 416, 821
Fsp4HI GCNGC 3 cut(s) 5, 153, 606
FspBI CTAG 1 cut(s) 107
FspI TGCGCA 1 cut(s) 333
GlaI GCGC 4 cut(s) 8, 89, 333, 679
GluI GCNGC 3 cut(s) 5, 153, 606
GsuI CTGGAG 1 cut(s) 741
HaeIII GGCC 1 cut(s) 533
HapII CCGG 2 cut(s) 271, 644
HhaI GCGC 4 cut(s) 9, 90, 334, 680
Hin1II CATG 4 cut(s) 384, 422, 515, 538
Hin6I GCGC 4 cut(s) 7, 88, 332, 678
HinP1I GCGC 4 cut(s) 7, 88, 332, 678
HincII GTYRAC 1 cut(s) 24
HindII GTYRAC 1 cut(s) 24
HinfI GANTC 1 cut(s) 343
HpaII CCGG 2 cut(s) 271, 644
HphI GGTGA 1 cut(s) 608
Hpy166II GTNNAC 3 cut(s) 24, 389, 434
Hpy188I TCNGA 6 cut(s) 141, 240, 249, 279, 367, 836
Hpy188III TCNNGA 6 cut(s) 107, 164, 199, 419, 583, 806
Hpy8I GTNNAC 3 cut(s) 24, 389, 434
HpyAV CCTTC 5 cut(s) 22, 50, 470, 523, 739
HpyCH4IV ACGT 1 cut(s) 564
HpyCH4V TGCA 1 cut(s) 227
HpyF10VI GCNNNNNNNGC 3 cut(s) 57, 66, 677
HpyF3I CTNAG 3 cut(s) 237, 303, 549
HpySE526I ACGT 1 cut(s) 564
Hsp92II CATG 4 cut(s) 384, 422, 515, 538
HspAI GCGC 4 cut(s) 7, 88, 332, 678
Kzo9I GATC 6 cut(s) 93, 168, 244, 274, 750, 802
LguI GCTCTTC 1 cut(s) 162
LmnI GCTCC 1 cut(s) 289
Lsp1109I GCAGC 2 cut(s) 139, 617
LweI GCATC 2 cut(s) 534, 631
MaeI CTAG 1 cut(s) 107
MaeII ACGT 1 cut(s) 564
MaeIII GTNAC 2 cut(s) 204, 502
MalI GATC 6 cut(s) 95, 170, 246, 276, 752, 804
MboI GATC 6 cut(s) 93, 168, 244, 274, 750, 802
MboII GAAGA 3 cut(s) 94, 122, 149
MflI RGATCY 2 cut(s) 244, 274
MhlI GDGCHC 1 cut(s) 286
MluCI AATT 7 cut(s) 15, 252, 296, 369, 395, 577, 767
MmeI TCCRAC 1 cut(s) 497
MseI TTAA 2 cut(s) 617, 780
MslI CAYNNNNRTG 3 cut(s) 213, 429, 708
MspI CCGG 2 cut(s) 271, 644
MspR9I CCNGG 3 cut(s) 271, 272, 720
MvaI CCWGG 1 cut(s) 720
MvnI CGCG 1 cut(s) 678
MwoI GCNNNNNNNGC 3 cut(s) 57, 66, 677
NciI CCSGG 2 cut(s) 271, 272
NcoI CCATGG 1 cut(s) 534
NdeII GATC 6 cut(s) 93, 168, 244, 274, 750, 802
NlaIII CATG 4 cut(s) 384, 422, 515, 538
NlaIV GGNNCC 2 cut(s) 276, 701
NmuCI GTSAC 2 cut(s) 204, 502
NsbI TGCGCA 1 cut(s) 333
NspI RCATGY 1 cut(s) 384
PagI TCATGA 1 cut(s) 418
PciSI GCTCTTC 1 cut(s) 162
PfeI GAWTC 1 cut(s) 343
PkrI GCNGC 3 cut(s) 6, 154, 607
PmaCI CACGTG 1 cut(s) 565
PmlI CACGTG 1 cut(s) 565
Ppu21I YACGTR 1 cut(s) 565
PpuMI RGGWCCY 1 cut(s) 725
PsiI TTATAA 1 cut(s) 452
Psp5II RGGWCCY 1 cut(s) 725
Psp6I CCWGG 1 cut(s) 718
PspCI CACGTG 1 cut(s) 565
PspGI CCWGG 1 cut(s) 718
PspN4I GGNNCC 2 cut(s) 276, 701
PspPI GGNCC 3 cut(s) 470, 725, 755
PspPPI RGGWCCY 1 cut(s) 725
PsuI RGATCY 2 cut(s) 244, 274
RsaI GTAC 3 cut(s) 35, 41, 435
RsaNI GTAC 3 cut(s) 34, 40, 434
RseI CAYNNNNRTG 3 cut(s) 213, 429, 708
SapI GCTCTTC 1 cut(s) 162
SaqAI TTAA 2 cut(s) 617, 780
SatI GCNGC 3 cut(s) 5, 153, 606
Sau3AI GATC 6 cut(s) 93, 168, 244, 274, 750, 802
Sau96I GGNCC 3 cut(s) 470, 725, 755
ScaI AGTACT 1 cut(s) 35
ScrFI CCNGG 3 cut(s) 271, 272, 720
SduI GDGCHC 1 cut(s) 286
SfaNI GCATC 2 cut(s) 534, 631
SinI GGWCC 3 cut(s) 470, 725, 755
SmaI CCCGGG 1 cut(s) 272
SmiMI CAYNNNNRTG 3 cut(s) 213, 429, 708
Sse9I AATT 7 cut(s) 15, 252, 296, 369, 395, 577, 767
SspI AATATT 1 cut(s) 613
SspMI CTAG 1 cut(s) 107
StyD4I CCNGG 3 cut(s) 269, 270, 718
StyI CCWWGG 1 cut(s) 534
TaiI ACGT 1 cut(s) 567
TaqI TCGA 1 cut(s) 171
TaqII GACCGA 1 cut(s) 743
TasI AATT 7 cut(s) 15, 252, 296, 369, 395, 577, 767
TatI WGTACW 2 cut(s) 33, 39
TfiI GAWTC 1 cut(s) 343
Tru1I TTAA 2 cut(s) 617, 780
Tru9I TTAA 2 cut(s) 617, 780
TscAI CASTG 2 cut(s) 196, 639
TseFI GTSAC 2 cut(s) 204, 502
TseI GCWGC 3 cut(s) 4, 152, 605
Tsp45I GTSAC 2 cut(s) 204, 502
TspDTI ATGAA 7 cut(s) 356, 407, 435, 681, 825, 837, 860
TspGWI ACGGA 1 cut(s) 416
TspMI CCCGGG 1 cut(s) 270
TspRI CASTG 2 cut(s) 196, 639
VpaK11BI GGWCC 3 cut(s) 470, 725, 755
XapI RAATTY 2 cut(s) 252, 395
XbaI TCTAGA 1 cut(s) 106
XceI RCATGY 1 cut(s) 384
XcmI CCANNNNNNNNNTGG 1 cut(s) 464
XmaI CCCGGG 1 cut(s) 270
XspI CTAG 1 cut(s) 107
ZrmI AGTACT 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.