RchiOBHm_Chr1g0319831

U3 small nucleolar ribonucleoprotein protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0002667
Physical Location & Seq
Reverse (-)
7456471 .. 7463141
6671 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55004

Sequence Viewer

Length: 573 bp
ATGGACCACCTCAAGAGTCTTGATTCACGCACCCTTCTAATTCTGGTTATTTCTGAAATTGTTGAAAGTTGCCGTGCACATGACTACACAGATGTTGTGTTGGTGCATGAACATCGTGGTAAACCTGATGGTTTGATTGTATGCCACCTTCCATATGGACCAACAGCTTATTTTCAACTATGCAATGTGGTTTCAAGACATGACATCAAGGACAAGAAAGCCATGGGAACGGTGCCACAGGCTTATCCACATTTGATAATTAACAATTTCACGACTAAGTTGGGTGAGCGGACTGCAAATATTTTAAAACATCTTTTTCCAGTGCCAAAGCCAGTTACAAAACGCATAATCACTTTTTCGAATGAGCAGGACTACATTTCATTCAGGCATCATATTTATGACAAGCCTGGAGGTCCTAAATCCATTGAGCTGAAGGAGATTGGTCCGCGGTTTGAGTTGAAGCTTTTCAAGATAAAATTAGGAACAGTGGATCAGAATGAAGCCCAGAATGAATGGGTCCTCAAACCATACATGATGAACACAGCCAAGAAACAGAAATTTATAGGGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
Brix

Protein Analysis

190

Amino Acids

21.83

Weight (kDa)

9.27

Isoelectric Point (pI)

30.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Brix PF04427 23 - 157 6.3e-25 Brix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 232
AccBSI CCGCTC 1 cut(s) 289
AccII CGCG 1 cut(s) 448
AciI CCGC 3 cut(s) 289, 446, 448
AclWI GGATC 1 cut(s) 498
AcsI RAATTY 1 cut(s) 557
AcuI CTGAAG 1 cut(s) 452
AgsI TTSAA 5 cut(s) 65, 176, 195, 460, 469
AjnI CCWGG 1 cut(s) 406
AluBI AGCT 3 cut(s) 167, 430, 463
AluI AGCT 3 cut(s) 167, 430, 463
Alw21I GWGCWC 1 cut(s) 79
Alw44I GTGCAC 1 cut(s) 75
AlwI GGATC 1 cut(s) 498
ApaLI GTGCAC 1 cut(s) 75
ApoI RAATTY 1 cut(s) 557
Asp700I GAANNNNTTC 1 cut(s) 464
AspS9I GGNCC 5 cut(s) 4, 158, 413, 443, 517
AsuHPI GGTGA 1 cut(s) 296
AsuII TTCGAA 1 cut(s) 359
AvaII GGWCC 5 cut(s) 4, 158, 413, 443, 517
BaeGI GKGCMC 1 cut(s) 79
BanI GGYRCC 1 cut(s) 232
BarI GAAGNNNNNNTAC 2 cut(s) 132, 164
Bbv12I GWGCWC 1 cut(s) 79
BccI CCATC 1 cut(s) 122
BceAI ACGGC 1 cut(s) 57
BcgI CGANNNNNNTGC 2 cut(s) 95, 129
BciT130I CCWGG 1 cut(s) 408
Bme1390I CCNGG 1 cut(s) 408
Bme18I GGWCC 5 cut(s) 4, 158, 413, 443, 517
BmgT120I GGNCC 5 cut(s) 4, 158, 413, 443, 517
BmiI GGNNCC 2 cut(s) 234, 518
BmrFI CCNGG 1 cut(s) 408
BmsI GCATC 1 cut(s) 397
BpmI CTGGAG 1 cut(s) 429
Bpu14I TTCGAA 1 cut(s) 359
BsaJI CCNNGG 2 cut(s) 222, 446
Bse1I ACTGG 2 cut(s) 320, 332
Bse3DI GCAATG 1 cut(s) 190
BseBI CCWGG 1 cut(s) 408
BseDI CCNNGG 2 cut(s) 222, 446
BseMI GCAATG 1 cut(s) 190
BseNI ACTGG 2 cut(s) 320, 332
BseSI GKGCMC 1 cut(s) 79
Bsh1236I CGCG 1 cut(s) 448
BshNI GGYRCC 1 cut(s) 232
BsiHKAI GWGCWC 1 cut(s) 79
Bsp119I TTCGAA 1 cut(s) 359
Bsp1286I GDGCHC 1 cut(s) 79
Bsp143I GATC 1 cut(s) 490
Bsp19I CCATGG 1 cut(s) 222
BspACI CCGC 3 cut(s) 289, 446, 448
BspFNI CGCG 1 cut(s) 448
BspLI GGNNCC 2 cut(s) 234, 518
BspPI GGATC 1 cut(s) 498
BspT104I TTCGAA 1 cut(s) 359
BspT107I GGYRCC 1 cut(s) 232
BsrBI CCGCTC 1 cut(s) 289
BsrDI GCAATG 1 cut(s) 190
BsrI ACTGG 2 cut(s) 320, 332
BssECI CCNNGG 2 cut(s) 222, 446
BssMI GATC 1 cut(s) 490
BssT1I CCWWGG 1 cut(s) 222
Bst2UI CCWGG 1 cut(s) 408
Bst4CI ACNGT 2 cut(s) 232, 487
BstBI TTCGAA 1 cut(s) 359
BstDEI CTNAG 1 cut(s) 276
BstDSI CCRYGG 2 cut(s) 222, 446
BstFNI CGCG 1 cut(s) 448
BstKTI GATC 1 cut(s) 493
BstMBI GATC 1 cut(s) 490
BstNI CCWGG 1 cut(s) 408
BstSCI CCNGG 1 cut(s) 406
BstSLI GKGCMC 1 cut(s) 79
BstUI CGCG 1 cut(s) 448
BtgI CCRYGG 2 cut(s) 222, 446
BtsIMutI CAGTG 2 cut(s) 327, 492
Cfr13I GGNCC 5 cut(s) 4, 158, 413, 443, 517
Cfr42I CCGCGG 1 cut(s) 449
CviAII CATG 5 cut(s) 80, 107, 200, 223, 532
CviJI RGCY 9 cut(s) 167, 221, 242, 331, 406, 430, 463, 503, 545
CviKI_1 RGCY 9 cut(s) 167, 221, 242, 331, 406, 430, 463, 503, 545
DdeI CTNAG 1 cut(s) 276
DpnI GATC 1 cut(s) 492
DpnII GATC 1 cut(s) 490
DraI TTTAAA 1 cut(s) 306
Eco130I CCWWGG 1 cut(s) 222
Eco47I GGWCC 5 cut(s) 4, 158, 413, 443, 517
Eco57I CTGAAG 1 cut(s) 452
EcoO109I RGGNCCY 2 cut(s) 413, 517
EcoRII CCWGG 1 cut(s) 406
EcoT14I CCWWGG 1 cut(s) 222
ErhI CCWWGG 1 cut(s) 222
FaeI CATG 5 cut(s) 83, 110, 203, 226, 535
FatI CATG 5 cut(s) 79, 106, 199, 222, 531
FauNDI CATATG 1 cut(s) 154
GsuI CTGGAG 1 cut(s) 429
Hin1II CATG 5 cut(s) 83, 110, 203, 226, 535
HindIII AAGCTT 1 cut(s) 461
HinfI GANTC 2 cut(s) 16, 23
HphI GGTGA 1 cut(s) 296
Hpy166II GTNNAC 2 cut(s) 77, 122
Hpy188I TCNGA 2 cut(s) 55, 495
Hpy188III TCNNGA 5 cut(s) 13, 20, 195, 271, 469
Hpy8I GTNNAC 2 cut(s) 77, 122
HpyAV CCTTC 3 cut(s) 44, 158, 427
HpyCH4III ACNGT 2 cut(s) 232, 487
HpyCH4V TGCA 4 cut(s) 77, 106, 183, 296
HpyF3I CTNAG 1 cut(s) 276
Hsp92II CATG 5 cut(s) 83, 110, 203, 226, 535
KspI CCGCGG 1 cut(s) 449
Kzo9I GATC 1 cut(s) 490
LweI GCATC 1 cut(s) 397
MaeIII GTNAC 1 cut(s) 334
MalI GATC 1 cut(s) 492
MbiI CCGCTC 1 cut(s) 289
MboI GATC 1 cut(s) 490
MhlI GDGCHC 1 cut(s) 79
MluCI AATT 7 cut(s) 39, 57, 258, 265, 476, 557, 568
MlyI GAGTC 1 cut(s) 25
MnlI CCTC 3 cut(s) 20, 404, 530
MroXI GAANNNNTTC 1 cut(s) 464
MseI TTAA 2 cut(s) 261, 305
MslI CAYNNNNRTG 1 cut(s) 396
MspA1I CMGCKG 1 cut(s) 448
MspR9I CCNGG 1 cut(s) 408
MvaI CCWGG 1 cut(s) 408
MvnI CGCG 1 cut(s) 448
NcoI CCATGG 1 cut(s) 222
NdeI CATATG 1 cut(s) 154
NdeII GATC 1 cut(s) 490
NlaIII CATG 5 cut(s) 83, 110, 203, 226, 535
NlaIV GGNNCC 2 cut(s) 234, 518
NspV TTCGAA 1 cut(s) 359
PdmI GAANNNNTTC 1 cut(s) 464
PfeI GAWTC 1 cut(s) 23
PleI GAGTC 1 cut(s) 24
PpsI GAGTC 1 cut(s) 24
PpuMI RGGWCCY 2 cut(s) 413, 517
Psp5II RGGWCCY 2 cut(s) 413, 517
Psp6I CCWGG 1 cut(s) 406
PspGI CCWGG 1 cut(s) 406
PspN4I GGNNCC 2 cut(s) 234, 518
PspPI GGNCC 5 cut(s) 4, 158, 413, 443, 517
PspPPI RGGWCCY 2 cut(s) 413, 517
RseI CAYNNNNRTG 1 cut(s) 396
SacII CCGCGG 1 cut(s) 449
SaqAI TTAA 2 cut(s) 261, 305
Sau3AI GATC 1 cut(s) 490
Sau96I GGNCC 5 cut(s) 4, 158, 413, 443, 517
SchI GAGTC 1 cut(s) 25
ScrFI CCNGG 1 cut(s) 408
SduI GDGCHC 1 cut(s) 79
SetI ASST 7 cut(s) 12, 127, 150, 169, 415, 432, 465
SfaNI GCATC 1 cut(s) 397
Sfr303I CCGCGG 1 cut(s) 449
SfuI TTCGAA 1 cut(s) 359
SgrBI CCGCGG 1 cut(s) 449
SinI GGWCC 5 cut(s) 4, 158, 413, 443, 517
SmiMI CAYNNNNRTG 1 cut(s) 396
SmlI CTYRAG 1 cut(s) 11
SmoI CTYRAG 1 cut(s) 11
Sse9I AATT 7 cut(s) 39, 57, 258, 265, 476, 557, 568
SsiI CCGC 3 cut(s) 289, 446, 448
SspI AATATT 1 cut(s) 301
StyD4I CCNGG 1 cut(s) 406
StyI CCWWGG 1 cut(s) 222
TaaI ACNGT 2 cut(s) 232, 487
TaqI TCGA 1 cut(s) 359
TasI AATT 7 cut(s) 39, 57, 258, 265, 476, 557, 568
TfiI GAWTC 1 cut(s) 23
Tru1I TTAA 2 cut(s) 261, 305
Tru9I TTAA 2 cut(s) 261, 305
TscAI CASTG 2 cut(s) 327, 492
TspDTI ATGAA 5 cut(s) 123, 369, 513, 525, 551
TspRI CASTG 2 cut(s) 327, 492
VneI GTGCAC 1 cut(s) 75
VpaK11BI GGWCC 5 cut(s) 4, 158, 413, 443, 517
XapI RAATTY 1 cut(s) 557
XcmI CCANNNNNNNNNTGG 1 cut(s) 152
XmnI GAANNNNTTC 1 cut(s) 464
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.