Rh1DG022700

U3 small nucleolar ribonucleoprotein protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0002667
Physical Location & Seq
Forward (+)
3498132 .. 3503689
5558 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG022700.1

Sequence Viewer

Length: 798 bp
ATGAATCTTGTTTTGCATTTTGCAGGGCAGCAGCAAGTAAAAGGTGGAGAAAATCATCTTCACGTCTACAGAGCCTATGGAGTTCAATTCCCATACACCACCATCGTCATCGAACTAACTTTACTACTAGTTGTGACCTGCAAGGAGTACAAGATTGAGAAAATATTGAAACTATGCCCTGGTGATTTCCGGGGGGCATTACCTGAGTTCACAAGAAGTATAGAAAAAGAAGATAAAAATGAAGTTGTTTCTGAAATTGTTGAAAGTTGCCGTGCACATGACTACACAGATGTTGTGTTGGTGCATGAACATCGTGGTAAACCTGATGGTTTGATTGTATGCCACCTTCCATATGGACCAACAGCTTATTTTCAACTATGCAATGTGGTTTCAAGACATGACATCAAGGACAAGAAAGCCATGGGAACGGTGCCACAGGCTTATCCACATTTGATAATCAACAATTTCACGACTAAGTTGGGTGAGCGGACTGCAAATATTTTAAAACATCTTTTTCCAGTGCCAAAGCCAGATACAAAACGCATAATCACTTTTTCGAATGAGCAGGACTACATTTCATTCAGGCATCATATTTATGACAAGCCTGGAGGTCCTAAATCCATTGAGCTGAAGGAGATTGGCCCGCGGTTTGAGTTGAAGCTTTTCAAGTTTAGATTCATCAGTTTACATTCACATGATATAAAATTAGGAACAGTGGATCAGAATGAAGCCCAGAATGAATGGGTCCTCAAACCGTACATGAACACAGCCAAGAAACAGAAATTTATAGGGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
Brix

Protein Analysis

265

Amino Acids

30.51

Weight (kDa)

8.92

Isoelectric Point (pI)

28.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Brix PF04427 59 - 223 6.8e-27 Brix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 146
AccB1I GGYRCC 1 cut(s) 430
AccBSI CCGCTC 1 cut(s) 487
AccI GTMKAC 1 cut(s) 66
AccII CGCG 1 cut(s) 646
AciI CCGC 3 cut(s) 487, 644, 646
AclWI GGATC 1 cut(s) 726
AcsI RAATTY 1 cut(s) 782
AcuI CTGAAG 1 cut(s) 650
AfaI GTAC 2 cut(s) 149, 758
AgsI TTSAA 7 cut(s) 86, 169, 263, 374, 393, 658, 667
AhlI ACTAGT 1 cut(s) 127
AjiI CACGTC 1 cut(s) 64
AjnI CCWGG 2 cut(s) 178, 604
AluBI AGCT 3 cut(s) 365, 628, 661
AluI AGCT 3 cut(s) 365, 628, 661
Alw21I GWGCWC 1 cut(s) 277
Alw44I GTGCAC 1 cut(s) 273
AlwI GGATC 1 cut(s) 726
AoxI GGCC 1 cut(s) 640
ApaLI GTGCAC 1 cut(s) 273
ApeKI GCWGC 2 cut(s) 28, 31
ApoI RAATTY 1 cut(s) 782
Asp700I GAANNNNTTC 1 cut(s) 662
AspS9I GGNCC 4 cut(s) 356, 611, 641, 745
AsuC2I CCSGG 1 cut(s) 191
AsuHPI GGTGA 2 cut(s) 194, 494
AsuII TTCGAA 1 cut(s) 557
AvaII GGWCC 3 cut(s) 356, 611, 745
BaeGI GKGCMC 1 cut(s) 277
BanI GGYRCC 1 cut(s) 430
BarI GAAGNNNNNNTAC 2 cut(s) 330, 362
Bbv12I GWGCWC 1 cut(s) 277
BbvI GCAGC 2 cut(s) 40, 43
BccI CCATC 2 cut(s) 110, 320
BceAI ACGGC 1 cut(s) 255
BcgI CGANNNNNNTGC 2 cut(s) 293, 327
BciT130I CCWGG 2 cut(s) 180, 606
BcnI CCSGG 1 cut(s) 191
BcuI ACTAGT 1 cut(s) 127
BfaI CTAG 1 cut(s) 128
BfmI CTRYAG 1 cut(s) 67
BfuAI ACCTGC 1 cut(s) 146
BisI GCNGC 2 cut(s) 29, 32
BlsI GCNGC 2 cut(s) 30, 33
Bme1390I CCNGG 3 cut(s) 180, 191, 606
Bme18I GGWCC 3 cut(s) 356, 611, 745
BmgBI CACGTC 1 cut(s) 64
BmgT120I GGNCC 4 cut(s) 356, 611, 641, 745
BmiI GGNNCC 2 cut(s) 432, 746
BmrFI CCNGG 3 cut(s) 180, 191, 606
BmsI GCATC 1 cut(s) 595
BpmI CTGGAG 1 cut(s) 627
Bpu14I TTCGAA 1 cut(s) 557
BpuMI CCSGG 1 cut(s) 191
BsaJI CCNNGG 4 cut(s) 178, 190, 420, 644
Bse1I ACTGG 1 cut(s) 518
Bse3DI GCAATG 1 cut(s) 388
BseBI CCWGG 2 cut(s) 180, 606
BseDI CCNNGG 4 cut(s) 178, 190, 420, 644
BseMI GCAATG 1 cut(s) 388
BseMII CTCAG 1 cut(s) 195
BseNI ACTGG 1 cut(s) 518
BseSI GKGCMC 1 cut(s) 277
BseXI GCAGC 2 cut(s) 40, 43
Bsh1236I CGCG 1 cut(s) 646
BshFI GGCC 1 cut(s) 642
BshNI GGYRCC 1 cut(s) 430
BsiHKAI GWGCWC 1 cut(s) 277
BsiSI CCGG 1 cut(s) 190
BsnI GGCC 1 cut(s) 642
Bsp119I TTCGAA 1 cut(s) 557
Bsp1286I GDGCHC 1 cut(s) 277
Bsp143I GATC 1 cut(s) 718
Bsp19I CCATGG 1 cut(s) 420
BspACI CCGC 3 cut(s) 487, 644, 646
BspANI GGCC 1 cut(s) 642
BspCNI CTCAG 1 cut(s) 196
BspFNI CGCG 1 cut(s) 646
BspLI GGNNCC 2 cut(s) 432, 746
BspMI ACCTGC 1 cut(s) 146
BspPI GGATC 1 cut(s) 726
BspT104I TTCGAA 1 cut(s) 557
BspT107I GGYRCC 1 cut(s) 430
BsrBI CCGCTC 1 cut(s) 487
BsrDI GCAATG 1 cut(s) 388
BsrI ACTGG 1 cut(s) 518
BssECI CCNNGG 4 cut(s) 178, 190, 420, 644
BssMI GATC 1 cut(s) 718
BssT1I CCWWGG 1 cut(s) 420
Bst2UI CCWGG 2 cut(s) 180, 606
Bst4CI ACNGT 3 cut(s) 430, 715, 756
BstBI TTCGAA 1 cut(s) 557
BstC8I GCNNGC 1 cut(s) 644
BstDEI CTNAG 2 cut(s) 204, 474
BstDSI CCRYGG 2 cut(s) 420, 644
BstFNI CGCG 1 cut(s) 646
BstKTI GATC 1 cut(s) 721
BstMBI GATC 1 cut(s) 718
BstNI CCWGG 2 cut(s) 180, 606
BstSCI CCNGG 3 cut(s) 178, 189, 604
BstSFI CTRYAG 1 cut(s) 67
BstSLI GKGCMC 1 cut(s) 277
BstUI CGCG 1 cut(s) 646
BstV1I GCAGC 2 cut(s) 40, 43
BsuRI GGCC 1 cut(s) 642
BtgI CCRYGG 2 cut(s) 420, 644
BtrI CACGTC 1 cut(s) 64
BtsIMutI CAGTG 2 cut(s) 525, 720
BveI ACCTGC 1 cut(s) 146
Cac8I GCNNGC 1 cut(s) 644
Cfr13I GGNCC 4 cut(s) 356, 611, 641, 745
Cfr42I CCGCGG 1 cut(s) 647
Csp6I GTAC 2 cut(s) 148, 757
CviAII CATG 6 cut(s) 278, 305, 398, 421, 695, 760
CviQI GTAC 2 cut(s) 148, 757
DdeI CTNAG 2 cut(s) 204, 474
DpnI GATC 1 cut(s) 720
DpnII GATC 1 cut(s) 718
DraI TTTAAA 1 cut(s) 504
Eco130I CCWWGG 1 cut(s) 420
Eco47I GGWCC 3 cut(s) 356, 611, 745
Eco57I CTGAAG 1 cut(s) 650
EcoO109I RGGNCCY 2 cut(s) 611, 745
EcoRII CCWGG 2 cut(s) 178, 604
EcoT14I CCWWGG 1 cut(s) 420
ErhI CCWWGG 1 cut(s) 420
FaeI CATG 6 cut(s) 281, 308, 401, 424, 698, 763
FatI CATG 6 cut(s) 277, 304, 397, 420, 694, 759
FauI CCCGC 1 cut(s) 651
FauNDI CATATG 1 cut(s) 352
FblI GTMKAC 1 cut(s) 66
Fnu4HI GCNGC 2 cut(s) 29, 32
Fsp4HI GCNGC 2 cut(s) 29, 32
FspBI CTAG 1 cut(s) 128
GluI GCNGC 2 cut(s) 29, 32
GsuI CTGGAG 1 cut(s) 627
HaeIII GGCC 1 cut(s) 642
HapII CCGG 1 cut(s) 190
Hin1II CATG 6 cut(s) 281, 308, 401, 424, 698, 763
HindIII AAGCTT 1 cut(s) 659
HinfI GANTC 2 cut(s) 4, 675
HpaII CCGG 1 cut(s) 190
HphI GGTGA 2 cut(s) 194, 494
Hpy166II GTNNAC 5 cut(s) 67, 210, 275, 320, 686
Hpy188I TCNGA 2 cut(s) 253, 723
Hpy188III TCNNGA 2 cut(s) 393, 469
Hpy8I GTNNAC 5 cut(s) 67, 210, 275, 320, 686
HpyAV CCTTC 2 cut(s) 356, 625
HpyCH4III ACNGT 3 cut(s) 430, 715, 756
HpyCH4IV ACGT 1 cut(s) 63
HpyCH4V TGCA 7 cut(s) 16, 23, 141, 275, 304, 381, 494
HpyF3I CTNAG 2 cut(s) 204, 474
HpySE526I ACGT 1 cut(s) 63
Hsp92II CATG 6 cut(s) 281, 308, 401, 424, 698, 763
KspI CCGCGG 1 cut(s) 647
Kzo9I GATC 1 cut(s) 718
Lsp1109I GCAGC 2 cut(s) 40, 43
LweI GCATC 1 cut(s) 595
MaeI CTAG 1 cut(s) 128
MaeII ACGT 1 cut(s) 63
MaeIII GTNAC 1 cut(s) 133
MalI GATC 1 cut(s) 720
MbiI CCGCTC 1 cut(s) 487
MboI GATC 1 cut(s) 718
MboII GAAGA 2 cut(s) 50, 242
MhlI GDGCHC 1 cut(s) 277
MluCI AATT 6 cut(s) 86, 255, 463, 704, 782, 793
MnlI CCTC 2 cut(s) 602, 758
MroXI GAANNNNTTC 1 cut(s) 662
MseI TTAA 1 cut(s) 503
MslI CAYNNNNRTG 2 cut(s) 594, 693
MspA1I CMGCKG 1 cut(s) 646
MspI CCGG 1 cut(s) 190
MspR9I CCNGG 3 cut(s) 180, 191, 606
MvaI CCWGG 2 cut(s) 180, 606
MvnI CGCG 1 cut(s) 646
NciI CCSGG 1 cut(s) 191
NcoI CCATGG 1 cut(s) 420
NdeI CATATG 1 cut(s) 352
NdeII GATC 1 cut(s) 718
NlaIII CATG 6 cut(s) 281, 308, 401, 424, 698, 763
NlaIV GGNNCC 2 cut(s) 432, 746
NmuCI GTSAC 1 cut(s) 133
NspV TTCGAA 1 cut(s) 557
PdmI GAANNNNTTC 1 cut(s) 662
PfeI GAWTC 2 cut(s) 4, 675
PkrI GCNGC 2 cut(s) 30, 33
PpuMI RGGWCCY 2 cut(s) 611, 745
Psp5II RGGWCCY 2 cut(s) 611, 745
Psp6I CCWGG 2 cut(s) 178, 604
PspGI CCWGG 2 cut(s) 178, 604
PspN4I GGNNCC 2 cut(s) 432, 746
PspPI GGNCC 4 cut(s) 356, 611, 641, 745
PspPPI RGGWCCY 2 cut(s) 611, 745
PsrI GAACNNNNNNTAC 2 cut(s) 105, 137
RsaI GTAC 2 cut(s) 149, 758
RsaNI GTAC 2 cut(s) 148, 757
RseI CAYNNNNRTG 2 cut(s) 594, 693
SacII CCGCGG 1 cut(s) 647
SaqAI TTAA 1 cut(s) 503
SatI GCNGC 2 cut(s) 29, 32
Sau3AI GATC 1 cut(s) 718
Sau96I GGNCC 4 cut(s) 356, 611, 641, 745
ScrFI CCNGG 3 cut(s) 180, 191, 606
SduI GDGCHC 1 cut(s) 277
SfaNI GCATC 1 cut(s) 595
SfcI CTRYAG 1 cut(s) 67
Sfr303I CCGCGG 1 cut(s) 647
SfuI TTCGAA 1 cut(s) 557
SgrBI CCGCGG 1 cut(s) 647
SinI GGWCC 3 cut(s) 356, 611, 745
SmiMI CAYNNNNRTG 2 cut(s) 594, 693
SpeI ACTAGT 1 cut(s) 127
Sse9I AATT 6 cut(s) 86, 255, 463, 704, 782, 793
SsiI CCGC 3 cut(s) 487, 644, 646
SspI AATATT 2 cut(s) 165, 499
SspMI CTAG 1 cut(s) 128
StyD4I CCNGG 3 cut(s) 178, 189, 604
StyI CCWWGG 1 cut(s) 420
TaaI ACNGT 3 cut(s) 430, 715, 756
TaiI ACGT 1 cut(s) 66
TaqI TCGA 2 cut(s) 111, 557
TasI AATT 6 cut(s) 86, 255, 463, 704, 782, 793
TatI WGTACW 1 cut(s) 147
TfiI GAWTC 2 cut(s) 4, 675
Tru1I TTAA 1 cut(s) 503
Tru9I TTAA 1 cut(s) 503
TscAI CASTG 2 cut(s) 525, 720
TseFI GTSAC 1 cut(s) 133
TseI GCWGC 2 cut(s) 28, 31
Tsp45I GTSAC 1 cut(s) 133
TspDTI ATGAA 8 cut(s) 17, 255, 321, 567, 667, 741, 753, 776
TspRI CASTG 2 cut(s) 525, 720
VneI GTGCAC 1 cut(s) 273
VpaK11BI GGWCC 3 cut(s) 356, 611, 745
XapI RAATTY 1 cut(s) 782
XcmI CCANNNNNNNNNTGG 1 cut(s) 350
XmiI GTMKAC 1 cut(s) 66
XmnI GAANNNNTTC 1 cut(s) 662
XspI CTAG 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.