Rorug01G0031100

U3 small nucleolar ribonucleoprotein protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0002667
Physical Location & Seq
Forward (+)
5258693 .. 5259259
567 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0031100.1

Sequence Viewer

Length: 567 bp
ATGCACACTGGTATGGGTAAATTGAAAGATCTCCAACTACTAAGTGACTTTGTCCTGGTGATAGACGATTCTGGAAAAAACATTAAAAAGTTAAAGGAGCTTTATTTGGGAAAATCACTTTGTATCTCGAATCTCACTAAAACTGCCCTTGATGGGAATGCTTTGGAGGACAATATGATCAGTGACAAGGAGTCTCTTACTCAGCTAGCTTTGACATGCAGAGGTAATACTGGTGGTTCAGGGAAAGATGAAGAAGTACTCAAGAAGCTCCAACCTCATCCAAATCTGGAGGAGCTCACAATTGAATCTTATGGGCATACAAATTTTTCAGATTGGTTAGGAAGTAATTCTTTCTTGAATCTAACTTCTATTACAGTAGCATATTGCAAATTTTGTCTCCACTTGCCACCATTTGGGCAGCTTCCCTCCCTCATACAGCTCTGTCTTACGGGGTTAGATGCAGTGGAGTCGATTGGTGCCGAGTTTTTTGGTTCTGTAACTGAGCCATTTAGATCCCTGAAAGTTCTGAGTTTCATACAGCATTATCACAAAACTCTGAAGGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
Brix

Protein Analysis

188

Amino Acids

20.71

Weight (kDa)

6.05

Isoelectric Point (pI)

34.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_R13L1-DRL21 PF25019 28 - 151 5.6e-28 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 476
AccB7I CCANNNNNTGG 1 cut(s) 413
AclWI GGATC 1 cut(s) 507
AcsI RAATTY 2 cut(s) 322, 389
AfaI GTAC 1 cut(s) 258
AfiI CCNNNNNNNGG 2 cut(s) 153, 413
AgsI TTSAA 3 cut(s) 25, 305, 358
AhdI GACNNNNNGTC 1 cut(s) 190
AjnI CCWGG 1 cut(s) 54
AluBI AGCT 7 cut(s) 100, 205, 209, 268, 295, 421, 439
AluI AGCT 7 cut(s) 100, 205, 209, 268, 295, 421, 439
Alw21I GWGCWC 1 cut(s) 297
Alw26I GTCTC 2 cut(s) 198, 401
AlwI GGATC 1 cut(s) 507
AoxI GGCC 1 cut(s) 561
ApeKI GCWGC 1 cut(s) 418
ApoI RAATTY 2 cut(s) 322, 389
Asp700I GAANNNNTTC 1 cut(s) 346
AsuHPI GGTGA 1 cut(s) 70
AsuNHI GCTAGC 1 cut(s) 205
BanI GGYRCC 1 cut(s) 476
BanII GRGCYC 1 cut(s) 297
Bbv12I GWGCWC 1 cut(s) 297
BbvI GCAGC 1 cut(s) 430
BccI CCATC 1 cut(s) 146
BcgI CGANNNNNNTGC 2 cut(s) 450, 484
BciT130I CCWGG 1 cut(s) 56
BclI TGATCA 1 cut(s) 177
BcoDI GTCTC 2 cut(s) 198, 401
BfaI CTAG 2 cut(s) 206, 565
BglII AGATCT 1 cut(s) 28
BisI GCNGC 1 cut(s) 419
BlsI GCNGC 1 cut(s) 420
BmcAI AGTACT 1 cut(s) 258
Bme1390I CCNGG 1 cut(s) 56
BmeRI GACNNNNNGTC 1 cut(s) 190
BmiI GGNNCC 1 cut(s) 478
BmrFI CCNGG 1 cut(s) 56
BmsI GCATC 1 cut(s) 448
BmtI GCTAGC 1 cut(s) 209
BpmI CTGGAG 1 cut(s) 308
BpuEI CTTGAG 1 cut(s) 245
Bsc4I CCNNNNNNNGG 2 cut(s) 153, 413
Bse1I ACTGG 2 cut(s) 13, 235
BseBI CCWGG 1 cut(s) 56
BseGI GGATG 1 cut(s) 277
BseLI CCNNNNNNNGG 2 cut(s) 153, 413
BseMII CTCAG 3 cut(s) 215, 492, 518
BseNI ACTGG 2 cut(s) 13, 235
BseRI GAGGAG 1 cut(s) 305
BseXI GCAGC 1 cut(s) 430
BshFI GGCC 1 cut(s) 563
BshNI GGYRCC 1 cut(s) 476
BsiHKAI GWGCWC 1 cut(s) 297
BslI CCNNNNNNNGG 2 cut(s) 153, 413
BsmAI GTCTC 2 cut(s) 198, 401
BsmI GAATGC 1 cut(s) 163
BsnI GGCC 1 cut(s) 563
Bsp1286I GDGCHC 1 cut(s) 297
Bsp143I GATC 3 cut(s) 28, 177, 512
BspANI GGCC 1 cut(s) 563
BspCNI CTCAG 3 cut(s) 214, 493, 519
BspLI GGNNCC 1 cut(s) 478
BspOI GCTAGC 1 cut(s) 209
BspPI GGATC 1 cut(s) 507
BspT107I GGYRCC 1 cut(s) 476
BsrI ACTGG 2 cut(s) 13, 235
BssMI GATC 3 cut(s) 28, 177, 512
Bst2UI CCWGG 1 cut(s) 56
Bst4CI ACNGT 1 cut(s) 376
BstC8I GCNNGC 1 cut(s) 207
BstDEI CTNAG 4 cut(s) 41, 201, 501, 527
BstF5I GGATG 1 cut(s) 277
BstKTI GATC 3 cut(s) 31, 180, 515
BstMAI GTCTC 2 cut(s) 198, 401
BstMBI GATC 3 cut(s) 28, 177, 512
BstNI CCWGG 1 cut(s) 56
BstNSI RCATGY 1 cut(s) 219
BstSCI CCNGG 1 cut(s) 54
BstV1I GCAGC 1 cut(s) 430
BstX2I RGATCY 2 cut(s) 28, 512
BstYI RGATCY 2 cut(s) 28, 512
BsuRI GGCC 1 cut(s) 563
BtsCI GGATG 1 cut(s) 277
BtsI GCAGTG 1 cut(s) 468
BtsIMutI CAGTG 3 cut(s) 6, 187, 468
Cac8I GCNNGC 1 cut(s) 207
Csp6I GTAC 1 cut(s) 257
CviAII CATG 1 cut(s) 216
CviJI RGCY 9 cut(s) 100, 205, 209, 268, 295, 421, 439, 505, 563
CviKI_1 RGCY 9 cut(s) 100, 205, 209, 268, 295, 421, 439, 505, 563
CviQI GTAC 1 cut(s) 257
DdeI CTNAG 4 cut(s) 41, 201, 501, 527
DpnI GATC 3 cut(s) 30, 179, 514
DpnII GATC 3 cut(s) 28, 177, 512
DriI GACNNNNNGTC 1 cut(s) 190
Eam1105I GACNNNNNGTC 1 cut(s) 190
Ecl136II GAGCTC 1 cut(s) 295
Eco147I AGGCCT 1 cut(s) 563
Eco24I GRGCYC 1 cut(s) 297
Eco53kI GAGCTC 1 cut(s) 295
EcoICRI GAGCTC 1 cut(s) 295
EcoRII CCWGG 1 cut(s) 54
EcoT38I GRGCYC 1 cut(s) 297
FaeI CATG 1 cut(s) 219
FaiI YATR 8 cut(s) 14, 176, 217, 312, 318, 382, 434, 536
FalI AAGNNNNNCTT 2 cut(s) 334, 366
FatI CATG 1 cut(s) 215
FbaI TGATCA 1 cut(s) 177
Fnu4HI GCNGC 1 cut(s) 419
FokI GGATG 1 cut(s) 264
FriOI GRGCYC 1 cut(s) 297
Fsp4HI GCNGC 1 cut(s) 419
FspBI CTAG 2 cut(s) 206, 565
GluI GCNGC 1 cut(s) 419
GsuI CTGGAG 1 cut(s) 308
HaeIII GGCC 1 cut(s) 563
Hin1II CATG 1 cut(s) 219
HinfI GANTC 6 cut(s) 68, 130, 191, 305, 358, 467
HphI GGTGA 1 cut(s) 70
Hpy188I TCNGA 3 cut(s) 331, 528, 558
Hpy188III TCNNGA 5 cut(s) 72, 127, 262, 287, 355
HpyAV CCTTC 1 cut(s) 553
HpyCH4III ACNGT 1 cut(s) 376
HpyCH4V TGCA 4 cut(s) 4, 219, 387, 461
HpyF3I CTNAG 4 cut(s) 41, 201, 501, 527
Hsp92II CATG 1 cut(s) 219
Ksp22I TGATCA 1 cut(s) 177
Kzo9I GATC 3 cut(s) 28, 177, 512
LmnI GCTCC 3 cut(s) 97, 273, 292
LpnPI CCDG 7 cut(s) 41, 57, 68, 216, 225, 272, 530
Lsp1109I GCAGC 1 cut(s) 430
LweI GCATC 1 cut(s) 448
MaeI CTAG 2 cut(s) 206, 565
MaeIII GTNAC 3 cut(s) 44, 182, 496
MalI GATC 3 cut(s) 30, 179, 514
MboI GATC 3 cut(s) 28, 177, 512
MboII GAAGA 1 cut(s) 263
MfeI CAATTG 1 cut(s) 300
MflI RGATCY 2 cut(s) 28, 512
MhlI GDGCHC 1 cut(s) 297
MluCI AATT 5 cut(s) 20, 300, 322, 346, 389
MlyI GAGTC 2 cut(s) 200, 476
MmeI TCCRAC 2 cut(s) 58, 295
MnlI CCTC 6 cut(s) 160, 215, 283, 285, 436, 440
MroXI GAANNNNTTC 1 cut(s) 346
MseI TTAA 2 cut(s) 84, 92
MslI CAYNNNNRTG 1 cut(s) 11
MspR9I CCNGG 1 cut(s) 56
MunI CAATTG 1 cut(s) 300
Mva1269I GAATGC 1 cut(s) 163
MvaI CCWGG 1 cut(s) 56
NdeII GATC 3 cut(s) 28, 177, 512
NheI GCTAGC 1 cut(s) 205
NlaIII CATG 1 cut(s) 219
NlaIV GGNNCC 1 cut(s) 478
NmeAIII GCCGAG 1 cut(s) 505
NmuCI GTSAC 2 cut(s) 44, 182
NspI RCATGY 1 cut(s) 219
PceI AGGCCT 1 cut(s) 563
PctI GAATGC 1 cut(s) 163
PdmI GAANNNNTTC 1 cut(s) 346
PfeI GAWTC 4 cut(s) 68, 130, 305, 358
PflFI GACNNNGTC 1 cut(s) 50
PflMI CCANNNNNTGG 1 cut(s) 413
PkrI GCNGC 1 cut(s) 420
PleI GAGTC 2 cut(s) 199, 475
PpsI GAGTC 2 cut(s) 199, 475
Psp124BI GAGCTC 1 cut(s) 297
Psp6I CCWGG 1 cut(s) 54
PspGI CCWGG 1 cut(s) 54
PspN4I GGNNCC 1 cut(s) 478
PsuI RGATCY 2 cut(s) 28, 512
PsyI GACNNNGTC 1 cut(s) 50
RsaI GTAC 1 cut(s) 258
RsaNI GTAC 1 cut(s) 257
RseI CAYNNNNRTG 1 cut(s) 11
SacI GAGCTC 1 cut(s) 297
SaqAI TTAA 2 cut(s) 84, 92
SatI GCNGC 1 cut(s) 419
Sau3AI GATC 3 cut(s) 28, 177, 512
ScaI AGTACT 1 cut(s) 258
SchI GAGTC 2 cut(s) 200, 476
ScrFI CCNGG 1 cut(s) 56
SduI GDGCHC 1 cut(s) 297
SetI ASST 9 cut(s) 102, 207, 211, 226, 270, 277, 297, 423, 441
SfaNI GCATC 1 cut(s) 448
SmiMI CAYNNNNRTG 1 cut(s) 11
SmlI CTYRAG 1 cut(s) 260
SmoI CTYRAG 1 cut(s) 260
Sse9I AATT 5 cut(s) 20, 300, 322, 346, 389
SseBI AGGCCT 1 cut(s) 563
SspMI CTAG 2 cut(s) 206, 565
SstI GAGCTC 1 cut(s) 297
StuI AGGCCT 1 cut(s) 563
StyD4I CCNGG 1 cut(s) 54
TaaI ACNGT 1 cut(s) 376
TaqI TCGA 2 cut(s) 128, 470
TasI AATT 5 cut(s) 20, 300, 322, 346, 389
TatI WGTACW 1 cut(s) 256
TfiI GAWTC 4 cut(s) 68, 130, 305, 358
Tru1I TTAA 2 cut(s) 84, 92
Tru9I TTAA 2 cut(s) 84, 92
TscAI CASTG 3 cut(s) 13, 187, 468
TseFI GTSAC 2 cut(s) 44, 182
TseI GCWGC 1 cut(s) 418
Tsp45I GTSAC 2 cut(s) 44, 182
TspDTI ATGAA 2 cut(s) 264, 523
TspRI CASTG 3 cut(s) 13, 187, 468
Tth111I GACNNNGTC 1 cut(s) 50
Van91I CCANNNNNTGG 1 cut(s) 413
XapI RAATTY 2 cut(s) 322, 389
XceI RCATGY 1 cut(s) 219
XmnI GAANNNNTTC 1 cut(s) 346
XspI CTAG 2 cut(s) 206, 565
ZrmI AGTACT 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.