Rroxscaffold_160G00433730

U3 small nucleolar ribonucleoprotein protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000160
OG0002667
Physical Location & Seq
Reverse (-)
197155 .. 201692
4538 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_160G00433730.1

Sequence Viewer

Length: 738 bp
ATGTTGAGGAGAAATACGAGGTTAGAGAAGGAGTACTTGTTCAGGAAGAGTAAAGAAACCCTAGAACGCACGCAGTACGAGAAGAAGCGCAAGATAAGGCAAGCTCTACAAGAGGGAAAACCAATTCCTACTGAGCTTCGAAATGAAGAGGCCAAGCTTCGTCAAGAAATCGATCTCGAAGATGAAAACACTGCTGTTAAGTTGACAGATGAGGTTATTTCTGAAATTGTTGAAAGTTGCTGTGCACATGACTACACAGATGTTGTGTTGGTGCATGAACATCGTGGTAAACCTGATGGTTTGATTGTATGCCACCTTCCATATGGACCAACAGCTTATTTTCAACTATGCAATGTGGTTTCAAGACATGACATCAAGGACAAGAAAGCCATGGGAACGGTGCCACAGGCTTATCCACATTTGATTATTAACAATTTCACGACTAAGTTGGGTGAGCGGACAGCAAATATTTTAAAGCATCTTTTTCCAGTGCCAAAGCCAGATACAAAACGCATAATCACTTTTTCGAATGAGCAGGACTACATTTCATTCAGGCATCATATTTATGACAAGCCTGGAGGTCCTAAATCCATTGAGCTGAAGGAGATTGGTCCGCGGTTTGAGTTGAAGCTTTTCAAGATAAAGTTAGGAACAGTGGATCAGAATGAAGCCCAGAATGAATGGGTCCTCAAACCGTACATGAACACCGCCAAGAAACAGAAGTTTATAGGGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
Brix

Protein Analysis

245

Amino Acids

28.58

Weight (kDa)

9.08

Isoelectric Point (pI)

34.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Brix PF04427 80 - 213 3.5e-25 Brix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 400
AccBSI CCGCTC 1 cut(s) 457
AccII CGCG 1 cut(s) 616
AciI CCGC 4 cut(s) 457, 614, 616, 708
AclWI GGATC 1 cut(s) 666
AcuI CTGAAG 1 cut(s) 620
AfaI GTAC 3 cut(s) 35, 77, 698
AgsI TTSAA 5 cut(s) 233, 344, 363, 628, 637
AjnI CCWGG 1 cut(s) 574
AloI GAACNNNNNNTCC 2 cut(s) 23, 55
AluBI AGCT 6 cut(s) 104, 136, 157, 335, 598, 631
AluI AGCT 6 cut(s) 104, 136, 157, 335, 598, 631
Alw21I GWGCWC 1 cut(s) 247
Alw44I GTGCAC 1 cut(s) 243
AlwI GGATC 1 cut(s) 666
AoxI GGCC 1 cut(s) 150
ApaLI GTGCAC 1 cut(s) 243
Asp700I GAANNNNTTC 1 cut(s) 632
AspLEI GCGC 1 cut(s) 90
AspS9I GGNCC 4 cut(s) 326, 581, 611, 685
AsuHPI GGTGA 1 cut(s) 464
AsuII TTCGAA 2 cut(s) 139, 527
AvaII GGWCC 4 cut(s) 326, 581, 611, 685
BaeGI GKGCMC 1 cut(s) 247
BanI GGYRCC 1 cut(s) 400
BarI GAAGNNNNNNTAC 2 cut(s) 300, 332
Bbv12I GWGCWC 1 cut(s) 247
BccI CCATC 1 cut(s) 290
BcgI CGANNNNNNTGC 2 cut(s) 263, 297
BciT130I CCWGG 1 cut(s) 576
BfaI CTAG 1 cut(s) 62
BmcAI AGTACT 1 cut(s) 35
Bme1390I CCNGG 1 cut(s) 576
Bme18I GGWCC 4 cut(s) 326, 581, 611, 685
BmgT120I GGNCC 4 cut(s) 326, 581, 611, 685
BmiI GGNNCC 2 cut(s) 402, 686
BmrFI CCNGG 1 cut(s) 576
BmsI GCATC 2 cut(s) 487, 565
BpmI CTGGAG 1 cut(s) 597
Bpu14I TTCGAA 2 cut(s) 139, 527
Bsa29I ATCGAT 1 cut(s) 171
BsaJI CCNNGG 2 cut(s) 390, 614
BsaXI ACNNNNNCTCC 2 cut(s) 23, 53
Bse1I ACTGG 1 cut(s) 488
Bse3DI GCAATG 1 cut(s) 358
BseBI CCWGG 1 cut(s) 576
BseCI ATCGAT 1 cut(s) 171
BseDI CCNNGG 2 cut(s) 390, 614
BseMI GCAATG 1 cut(s) 358
BseMII CTCAG 1 cut(s) 123
BseNI ACTGG 1 cut(s) 488
BseRI GAGGAG 1 cut(s) 22
BseSI GKGCMC 1 cut(s) 247
Bsh1236I CGCG 1 cut(s) 616
BshFI GGCC 1 cut(s) 152
BshNI GGYRCC 1 cut(s) 400
BshVI ATCGAT 1 cut(s) 171
BsiHKAI GWGCWC 1 cut(s) 247
BsnI GGCC 1 cut(s) 152
Bsp119I TTCGAA 2 cut(s) 139, 527
Bsp1286I GDGCHC 1 cut(s) 247
Bsp143I GATC 2 cut(s) 172, 658
Bsp19I CCATGG 1 cut(s) 390
BspACI CCGC 4 cut(s) 457, 614, 616, 708
BspANI GGCC 1 cut(s) 152
BspCNI CTCAG 1 cut(s) 124
BspDI ATCGAT 1 cut(s) 171
BspFNI CGCG 1 cut(s) 616
BspLI GGNNCC 2 cut(s) 402, 686
BspPI GGATC 1 cut(s) 666
BspT104I TTCGAA 2 cut(s) 139, 527
BspT107I GGYRCC 1 cut(s) 400
BsrBI CCGCTC 1 cut(s) 457
BsrDI GCAATG 1 cut(s) 358
BsrI ACTGG 1 cut(s) 488
BssECI CCNNGG 2 cut(s) 390, 614
BssMI GATC 2 cut(s) 172, 658
BssT1I CCWWGG 1 cut(s) 390
Bst2UI CCWGG 1 cut(s) 576
Bst4CI ACNGT 3 cut(s) 400, 655, 696
Bst6I CTCTTC 2 cut(s) 41, 141
BstBI TTCGAA 2 cut(s) 139, 527
BstC8I GCNNGC 2 cut(s) 71, 102
BstDEI CTNAG 2 cut(s) 132, 444
BstDSI CCRYGG 2 cut(s) 390, 614
BstFNI CGCG 1 cut(s) 616
BstHHI GCGC 1 cut(s) 90
BstKTI GATC 2 cut(s) 175, 661
BstMBI GATC 2 cut(s) 172, 658
BstNI CCWGG 1 cut(s) 576
BstSCI CCNGG 1 cut(s) 574
BstSLI GKGCMC 1 cut(s) 247
BstUI CGCG 1 cut(s) 616
Bsu15I ATCGAT 1 cut(s) 171
BsuRI GGCC 1 cut(s) 152
BsuTUI ATCGAT 1 cut(s) 171
BtgI CCRYGG 2 cut(s) 390, 614
BtsI GCAGTG 1 cut(s) 189
BtsIMutI CAGTG 3 cut(s) 189, 495, 660
Cac8I GCNNGC 2 cut(s) 71, 102
CfoI GCGC 1 cut(s) 90
Cfr13I GGNCC 4 cut(s) 326, 581, 611, 685
Cfr42I CCGCGG 1 cut(s) 617
ClaI ATCGAT 1 cut(s) 171
Csp6I GTAC 3 cut(s) 34, 76, 697
CviAII CATG 5 cut(s) 248, 275, 368, 391, 700
CviQI GTAC 3 cut(s) 34, 76, 697
DdeI CTNAG 2 cut(s) 132, 444
DpnI GATC 2 cut(s) 174, 660
DpnII GATC 2 cut(s) 172, 658
DraI TTTAAA 1 cut(s) 474
Eam1104I CTCTTC 2 cut(s) 41, 141
EarI CTCTTC 2 cut(s) 41, 141
Eco130I CCWWGG 1 cut(s) 390
Eco47I GGWCC 4 cut(s) 326, 581, 611, 685
Eco57I CTGAAG 1 cut(s) 620
EcoO109I RGGNCCY 2 cut(s) 581, 685
EcoRII CCWGG 1 cut(s) 574
EcoT14I CCWWGG 1 cut(s) 390
ErhI CCWWGG 1 cut(s) 390
FaeI CATG 5 cut(s) 251, 278, 371, 394, 703
FalI AAGNNNNNCTT 2 cut(s) 20, 52
FatI CATG 5 cut(s) 247, 274, 367, 390, 699
FauNDI CATATG 1 cut(s) 322
FspBI CTAG 1 cut(s) 62
GlaI GCGC 1 cut(s) 89
GsuI CTGGAG 1 cut(s) 597
HaeIII GGCC 1 cut(s) 152
HhaI GCGC 1 cut(s) 90
Hin1II CATG 5 cut(s) 251, 278, 371, 394, 703
Hin6I GCGC 1 cut(s) 88
HinP1I GCGC 1 cut(s) 88
HincII GTYRAC 1 cut(s) 204
HindII GTYRAC 1 cut(s) 204
HindIII AAGCTT 2 cut(s) 155, 629
HphI GGTGA 1 cut(s) 464
Hpy166II GTNNAC 3 cut(s) 204, 245, 290
Hpy188I TCNGA 2 cut(s) 223, 663
Hpy188III TCNNGA 6 cut(s) 43, 164, 176, 363, 439, 637
Hpy8I GTNNAC 3 cut(s) 204, 245, 290
HpyAV CCTTC 3 cut(s) 22, 326, 595
HpyCH4III ACNGT 3 cut(s) 400, 655, 696
HpyCH4V TGCA 3 cut(s) 245, 274, 351
HpyF3I CTNAG 2 cut(s) 132, 444
Hsp92II CATG 5 cut(s) 251, 278, 371, 394, 703
HspAI GCGC 1 cut(s) 88
KspI CCGCGG 1 cut(s) 617
Kzo9I GATC 2 cut(s) 172, 658
LweI GCATC 2 cut(s) 487, 565
MaeI CTAG 1 cut(s) 62
MalI GATC 2 cut(s) 174, 660
MbiI CCGCTC 1 cut(s) 457
MboI GATC 2 cut(s) 172, 658
MboII GAAGA 4 cut(s) 58, 94, 158, 191
MhlI GDGCHC 1 cut(s) 247
MluCI AATT 4 cut(s) 123, 225, 433, 733
MnlI CCTC 6 cut(s) 12, 106, 142, 205, 572, 698
MroXI GAANNNNTTC 1 cut(s) 632
MseI TTAA 3 cut(s) 198, 429, 473
MslI CAYNNNNRTG 1 cut(s) 564
MspA1I CMGCKG 1 cut(s) 616
MspR9I CCNGG 1 cut(s) 576
MvaI CCWGG 1 cut(s) 576
MvnI CGCG 1 cut(s) 616
NcoI CCATGG 1 cut(s) 390
NdeI CATATG 1 cut(s) 322
NdeII GATC 2 cut(s) 172, 658
NlaIII CATG 5 cut(s) 251, 278, 371, 394, 703
NlaIV GGNNCC 2 cut(s) 402, 686
NspV TTCGAA 2 cut(s) 139, 527
PdmI GAANNNNTTC 1 cut(s) 632
PpuMI RGGWCCY 2 cut(s) 581, 685
Psp5II RGGWCCY 2 cut(s) 581, 685
Psp6I CCWGG 1 cut(s) 574
PspGI CCWGG 1 cut(s) 574
PspN4I GGNNCC 2 cut(s) 402, 686
PspPI GGNCC 4 cut(s) 326, 581, 611, 685
PspPPI RGGWCCY 2 cut(s) 581, 685
RsaI GTAC 3 cut(s) 35, 77, 698
RsaNI GTAC 3 cut(s) 34, 76, 697
RseI CAYNNNNRTG 1 cut(s) 564
SacII CCGCGG 1 cut(s) 617
SaqAI TTAA 3 cut(s) 198, 429, 473
Sau3AI GATC 2 cut(s) 172, 658
Sau96I GGNCC 4 cut(s) 326, 581, 611, 685
ScaI AGTACT 1 cut(s) 35
ScrFI CCNGG 1 cut(s) 576
SduI GDGCHC 1 cut(s) 247
SfaNI GCATC 2 cut(s) 487, 565
Sfr303I CCGCGG 1 cut(s) 617
SfuI TTCGAA 2 cut(s) 139, 527
SgrBI CCGCGG 1 cut(s) 617
SinI GGWCC 4 cut(s) 326, 581, 611, 685
SmiMI CAYNNNNRTG 1 cut(s) 564
Sse9I AATT 4 cut(s) 123, 225, 433, 733
SsiI CCGC 4 cut(s) 457, 614, 616, 708
SspI AATATT 1 cut(s) 469
SspMI CTAG 1 cut(s) 62
StyD4I CCNGG 1 cut(s) 574
StyI CCWWGG 1 cut(s) 390
TaaI ACNGT 3 cut(s) 400, 655, 696
TaqI TCGA 4 cut(s) 139, 171, 177, 527
TasI AATT 4 cut(s) 123, 225, 433, 733
TatI WGTACW 1 cut(s) 33
Tru1I TTAA 3 cut(s) 198, 429, 473
Tru9I TTAA 3 cut(s) 198, 429, 473
TscAI CASTG 3 cut(s) 196, 495, 660
TspDTI ATGAA 7 cut(s) 159, 198, 291, 537, 681, 693, 716
TspRI CASTG 3 cut(s) 196, 495, 660
VneI GTGCAC 1 cut(s) 243
VpaK11BI GGWCC 4 cut(s) 326, 581, 611, 685
XcmI CCANNNNNNNNNTGG 1 cut(s) 320
XmnI GAANNNNTTC 1 cut(s) 632
XspI CTAG 1 cut(s) 62
ZrmI AGTACT 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.