Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004627.1

Orthogroup ID

OG0002667

Physical Location & Seq

Genomic Coordinates Reverse (-)

39030 .. 40323

Gene Structure 1294 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004627.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

atgcaggttatttctgaaattgttgaaagttgccgtgcacatgactacatagatgttgtgttggtgcatgaacatcgtggtaaacttgatggtttgattgtatgccaccttccatatggaccaacagcttattttcaactatgcaatgtggtttcaaggcatgacatcaaggacaagaaagccatgggaacggtgccacaggcttatccacatttgataattaacaatttcacgactaagttgggtgagcggactgcaaatattttaaaacatctttttccagtgccaaagccagatacaaaacgcataatcactttttcgaatgagcaggactacatttcattcaggcatcatatttataacaagcctggaggtcctaaatccattgagctgaaggagattggtccgcagtttgagttgaagcttttcaaggttagattcatcagtttacattcacatgatgtatgttattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Brix

Protein Analysis

157

Amino Acids

18.1

Weight (kDa)

8.86

Isoelectric Point (pI)

33.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002667)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63780
fragaria_vesca	FvH4_7g02470 FvH4_7g02470 FvH4_7g02470 FvH4_7g02470 FvH4_7g02470
malus_domestica	MD05G1030400.v1.1 MD10G1031800.v1.1
prunus_persica	Prupe.2G030400_v2.0.a1 Prupe.2G030400_v2.0.a1 Prupe.2G030400_v2.0.a1 Prupe.8G084800_v2.0.a1 Prupe.8G084800_v2.0.a1
pyrus_communis	pycom05g02160 pycom10g02010
rosa_chinensis	RchiOBHm_Chr1g0319831 RchiOBHm_Chr1g0320641 RchiOBHm_Chr1g0320961 RchiOBHm_Chr1g0321121
rosa_laevigata	RLG00000030450
rosa_multiflora	Rmu_sc0004627.1_g000009 Rmu_sc0004660.1_g000006 Rmu_sc0007977.1_g000009 Rmu_sc0008752.1_g000006
rosa_roxburghii	Rroxscaffold_160G00433730 Rroxscaffold_4G00328080
rosa_rugosa	Rorug01G0031000 Rorug01G0031100
rosa_samantha	Rh1AG043100 Rh1BG039800 Rh1CG043200 Rh1CG045200 Rh1DG022700 Rh1DG024200 Rh1DG025900 Rh1DG049600 Rh1DG049800
rosa_wichuraiana	Rw0G001080 Rw1G003660 Rw1G003780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	360
AccB1I	GGYRCC	1 cut(s)	193
AccBSI	CCGCTC	1 cut(s)	250
AciI	CCGC	2 cut(s)	250, 407
AcuI	CTGAAG	1 cut(s)	413
AgsI	TTSAA	5 cut(s)	26, 137, 156, 421, 430
AjnI	CCWGG	1 cut(s)	367
AluBI	AGCT	3 cut(s)	128, 391, 424
AluI	AGCT	3 cut(s)	128, 391, 424
Alw21I	GWGCWC	1 cut(s)	40
Alw44I	GTGCAC	1 cut(s)	36
ApaLI	GTGCAC	1 cut(s)	36
Asp700I	GAANNNNTTC	1 cut(s)	425
AspS9I	GGNCC	3 cut(s)	119, 374, 404
AsuHPI	GGTGA	1 cut(s)	257
AsuII	TTCGAA	1 cut(s)	320
AvaII	GGWCC	3 cut(s)	119, 374, 404
BaeGI	GKGCMC	1 cut(s)	40
BanI	GGYRCC	1 cut(s)	193
BarI	GAAGNNNNNNTAC	2 cut(s)	93, 125
Bbv12I	GWGCWC	1 cut(s)	40
BccI	CCATC	1 cut(s)	83
BceAI	ACGGC	1 cut(s)	18
BcgI	CGANNNNNNTGC	2 cut(s)	56, 90
BciT130I	CCWGG	1 cut(s)	369
Bme1390I	CCNGG	1 cut(s)	369
Bme18I	GGWCC	3 cut(s)	119, 374, 404
BmgT120I	GGNCC	3 cut(s)	119, 374, 404
BmiI	GGNNCC	1 cut(s)	195
BmrFI	CCNGG	1 cut(s)	369
BmsI	GCATC	1 cut(s)	358
BpmI	CTGGAG	1 cut(s)	390
Bpu14I	TTCGAA	1 cut(s)	320
BsaJI	CCNNGG	1 cut(s)	183
Bse1I	ACTGG	1 cut(s)	281
Bse3DI	GCAATG	1 cut(s)	151
BseBI	CCWGG	1 cut(s)	369
BseDI	CCNNGG	1 cut(s)	183
BseMI	GCAATG	1 cut(s)	151
BseNI	ACTGG	1 cut(s)	281
BseSI	GKGCMC	1 cut(s)	40
BshNI	GGYRCC	1 cut(s)	193
BsiHKAI	GWGCWC	1 cut(s)	40
Bsp119I	TTCGAA	1 cut(s)	320
Bsp1286I	GDGCHC	1 cut(s)	40
Bsp19I	CCATGG	1 cut(s)	183
BspACI	CCGC	2 cut(s)	250, 407
BspLI	GGNNCC	1 cut(s)	195
BspT104I	TTCGAA	1 cut(s)	320
BspT107I	GGYRCC	1 cut(s)	193
BsrBI	CCGCTC	1 cut(s)	250
BsrDI	GCAATG	1 cut(s)	151
BsrI	ACTGG	1 cut(s)	281
BssECI	CCNNGG	1 cut(s)	183
BssT1I	CCWWGG	1 cut(s)	183
Bst2UI	CCWGG	1 cut(s)	369
Bst4CI	ACNGT	1 cut(s)	193
BstBI	TTCGAA	1 cut(s)	320
BstDEI	CTNAG	1 cut(s)	237
BstDSI	CCRYGG	1 cut(s)	183
BstNI	CCWGG	1 cut(s)	369
BstSCI	CCNGG	1 cut(s)	367
BstSLI	GKGCMC	1 cut(s)	40
BtgI	CCRYGG	1 cut(s)	183
BtsIMutI	CAGTG	1 cut(s)	288
Cfr13I	GGNCC	3 cut(s)	119, 374, 404
CviAII	CATG	5 cut(s)	41, 68, 161, 184, 458
CviJI	RGCY	7 cut(s)	128, 182, 203, 292, 367, 391, 424
CviKI_1	RGCY	7 cut(s)	128, 182, 203, 292, 367, 391, 424
DdeI	CTNAG	1 cut(s)	237
DraI	TTTAAA	1 cut(s)	267
Eco130I	CCWWGG	1 cut(s)	183
Eco47I	GGWCC	3 cut(s)	119, 374, 404
Eco57I	CTGAAG	1 cut(s)	413
EcoO109I	RGGNCCY	1 cut(s)	374
EcoRII	CCWGG	1 cut(s)	367
EcoT14I	CCWWGG	1 cut(s)	183
ErhI	CCWWGG	1 cut(s)	183
FaeI	CATG	5 cut(s)	44, 71, 164, 187, 461
FatI	CATG	5 cut(s)	40, 67, 160, 183, 457
FauNDI	CATATG	1 cut(s)	115
GsuI	CTGGAG	1 cut(s)	390
Hin1II	CATG	5 cut(s)	44, 71, 164, 187, 461
HindIII	AAGCTT	1 cut(s)	422
HinfI	GANTC	1 cut(s)	438
HphI	GGTGA	1 cut(s)	257
Hpy166II	GTNNAC	3 cut(s)	38, 83, 449
Hpy188I	TCNGA	1 cut(s)	16
Hpy188III	TCNNGA	1 cut(s)	232
Hpy8I	GTNNAC	3 cut(s)	38, 83, 449
HpyAV	CCTTC	2 cut(s)	119, 388
HpyCH4III	ACNGT	1 cut(s)	193
HpyCH4V	TGCA	5 cut(s)	4, 38, 67, 144, 257
HpyF3I	CTNAG	1 cut(s)	237
Hsp92II	CATG	5 cut(s)	44, 71, 164, 187, 461
LpnPI	CCDG	7 cut(s)	185, 294, 306, 314, 331, 354, 381
LweI	GCATC	1 cut(s)	358
MbiI	CCGCTC	1 cut(s)	250
MhlI	GDGCHC	1 cut(s)	40
MluCI	AATT	3 cut(s)	18, 219, 226
MnlI	CCTC	1 cut(s)	365
MroXI	GAANNNNTTC	1 cut(s)	425
MseI	TTAA	2 cut(s)	222, 266
MslI	CAYNNNNRTG	1 cut(s)	456
MspR9I	CCNGG	1 cut(s)	369
MvaI	CCWGG	1 cut(s)	369
NcoI	CCATGG	1 cut(s)	183
NdeI	CATATG	1 cut(s)	115
NlaIII	CATG	5 cut(s)	44, 71, 164, 187, 461
NlaIV	GGNNCC	1 cut(s)	195
NspV	TTCGAA	1 cut(s)	320
PdmI	GAANNNNTTC	1 cut(s)	425
PfeI	GAWTC	1 cut(s)	438
PpuMI	RGGWCCY	1 cut(s)	374
PsiI	TTATAA	1 cut(s)	360
Psp5II	RGGWCCY	1 cut(s)	374
Psp6I	CCWGG	1 cut(s)	367
PspGI	CCWGG	1 cut(s)	367
PspN4I	GGNNCC	1 cut(s)	195
PspPI	GGNCC	3 cut(s)	119, 374, 404
PspPPI	RGGWCCY	1 cut(s)	374
RseI	CAYNNNNRTG	1 cut(s)	456
SaqAI	TTAA	2 cut(s)	222, 266
Sau96I	GGNCC	3 cut(s)	119, 374, 404
ScrFI	CCNGG	1 cut(s)	369
SduI	GDGCHC	1 cut(s)	40
SetI	ASST	7 cut(s)	9, 111, 130, 376, 393, 426, 435
SfaNI	GCATC	1 cut(s)	358
SfuI	TTCGAA	1 cut(s)	320
SinI	GGWCC	3 cut(s)	119, 374, 404
SmiMI	CAYNNNNRTG	1 cut(s)	456
Sse9I	AATT	3 cut(s)	18, 219, 226
SsiI	CCGC	2 cut(s)	250, 407
SspI	AATATT	1 cut(s)	262
StyD4I	CCNGG	1 cut(s)	367
StyI	CCWWGG	1 cut(s)	183
TaaI	ACNGT	1 cut(s)	193
TaqI	TCGA	1 cut(s)	320
TasI	AATT	3 cut(s)	18, 219, 226
TfiI	GAWTC	1 cut(s)	438
Tru1I	TTAA	2 cut(s)	222, 266
Tru9I	TTAA	2 cut(s)	222, 266
TscAI	CASTG	1 cut(s)	288
TspDTI	ATGAA	3 cut(s)	84, 330, 430
TspRI	CASTG	1 cut(s)	288
VneI	GTGCAC	1 cut(s)	36
VpaK11BI	GGWCC	3 cut(s)	119, 374, 404
XcmI	CCANNNNNNNNNTGG	1 cut(s)	113
XmnI	GAANNNNTTC	1 cut(s)	425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.