RchiOBHm_Chr1g0320641

U3 small nucleolar ribonucleoprotein protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0002667
Physical Location & Seq
Reverse (-)
8265509 .. 8268927
3419 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55077

Sequence Viewer

Length: 513 bp
ATGGACCACCTCAAGAGTCTTGATTCACGCACCCTTCTAATTCTGGTTATTTCTGAAATTGTTGAAAGTTGCCGTGCACATGACTACACAGATGTTGTGTTGGTGCATGAACATCGTGGTAAACCTGATGGTTTGATTGTATGCCACCTTCCATATGGACCAACAGCTTATTTTCAACTATGCAATGTGGTTTCAAGACATGACATCAAGGACAAGAAAGCCATGGGAACGGTGGCACAGGCTTATCCACATTTGATAATCAACAATTTCACGACTAAGTTGGGTGAGCGGACTGCAAATATTTTAAAACATCTTTTTCCAGTGCCAAAGCCAGATACAAAACGCATAATCACTTTTTTGAATGAGCAGGACTACATTTCATTCAGGCATCATATTTATGACGAGCCTGGAGGTCCTAAATCCATTGAGCTGAAGGAGATCGGTCCGCGGTTTGAGTTGAAGCTTTTCAAGTTTAGATTCGTCAGTTTACATTCACATGATGTATGTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
Brix

Protein Analysis

170

Amino Acids

19.62

Weight (kDa)

8.32

Isoelectric Point (pI)

33.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Brix PF04427 22 - 157 1.6e-24 Brix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 289
AccII CGCG 1 cut(s) 448
AciI CCGC 3 cut(s) 289, 446, 448
AcuI CTGAAG 1 cut(s) 452
AgsI TTSAA 6 cut(s) 65, 176, 195, 361, 460, 469
AjnI CCWGG 1 cut(s) 406
AluBI AGCT 3 cut(s) 167, 430, 463
AluI AGCT 3 cut(s) 167, 430, 463
Alw21I GWGCWC 1 cut(s) 79
Alw44I GTGCAC 1 cut(s) 75
ApaLI GTGCAC 1 cut(s) 75
Asp700I GAANNNNTTC 1 cut(s) 464
AspS9I GGNCC 4 cut(s) 4, 158, 413, 443
AsuHPI GGTGA 1 cut(s) 296
AvaII GGWCC 4 cut(s) 4, 158, 413, 443
BaeGI GKGCMC 1 cut(s) 79
BarI GAAGNNNNNNTAC 2 cut(s) 132, 164
Bbv12I GWGCWC 1 cut(s) 79
BccI CCATC 1 cut(s) 122
BceAI ACGGC 1 cut(s) 57
BcgI CGANNNNNNTGC 2 cut(s) 95, 129
BciT130I CCWGG 1 cut(s) 408
Bme1390I CCNGG 1 cut(s) 408
Bme18I GGWCC 4 cut(s) 4, 158, 413, 443
BmgT120I GGNCC 4 cut(s) 4, 158, 413, 443
BmrFI CCNGG 1 cut(s) 408
BmsI GCATC 1 cut(s) 397
BpmI CTGGAG 1 cut(s) 429
BsaJI CCNNGG 2 cut(s) 222, 446
Bse1I ACTGG 1 cut(s) 320
Bse3DI GCAATG 1 cut(s) 190
BseBI CCWGG 1 cut(s) 408
BseDI CCNNGG 2 cut(s) 222, 446
BseMI GCAATG 1 cut(s) 190
BseNI ACTGG 1 cut(s) 320
BseSI GKGCMC 1 cut(s) 79
Bsh1236I CGCG 1 cut(s) 448
BsiHKAI GWGCWC 1 cut(s) 79
Bsp1286I GDGCHC 1 cut(s) 79
Bsp143I GATC 1 cut(s) 438
Bsp19I CCATGG 1 cut(s) 222
BspACI CCGC 3 cut(s) 289, 446, 448
BspFNI CGCG 1 cut(s) 448
BsrBI CCGCTC 1 cut(s) 289
BsrDI GCAATG 1 cut(s) 190
BsrI ACTGG 1 cut(s) 320
BssECI CCNNGG 2 cut(s) 222, 446
BssMI GATC 1 cut(s) 438
BssT1I CCWWGG 1 cut(s) 222
Bst2UI CCWGG 1 cut(s) 408
Bst4CI ACNGT 1 cut(s) 232
BstDEI CTNAG 1 cut(s) 276
BstDSI CCRYGG 2 cut(s) 222, 446
BstFNI CGCG 1 cut(s) 448
BstKTI GATC 1 cut(s) 441
BstMBI GATC 1 cut(s) 438
BstNI CCWGG 1 cut(s) 408
BstSCI CCNGG 1 cut(s) 406
BstSLI GKGCMC 1 cut(s) 79
BstUI CGCG 1 cut(s) 448
BtgI CCRYGG 2 cut(s) 222, 446
BtsIMutI CAGTG 1 cut(s) 327
Cfr13I GGNCC 4 cut(s) 4, 158, 413, 443
Cfr42I CCGCGG 1 cut(s) 449
CpoI CGGWCCG 1 cut(s) 443
CspI CGGWCCG 1 cut(s) 443
CviAII CATG 5 cut(s) 80, 107, 200, 223, 497
CviJI RGCY 7 cut(s) 167, 221, 242, 331, 406, 430, 463
CviKI_1 RGCY 7 cut(s) 167, 221, 242, 331, 406, 430, 463
DdeI CTNAG 1 cut(s) 276
DpnI GATC 1 cut(s) 440
DpnII GATC 1 cut(s) 438
DraI TTTAAA 1 cut(s) 306
Eco130I CCWWGG 1 cut(s) 222
Eco47I GGWCC 4 cut(s) 4, 158, 413, 443
Eco57I CTGAAG 1 cut(s) 452
EcoO109I RGGNCCY 1 cut(s) 413
EcoRII CCWGG 1 cut(s) 406
EcoT14I CCWWGG 1 cut(s) 222
ErhI CCWWGG 1 cut(s) 222
FaeI CATG 5 cut(s) 83, 110, 203, 226, 500
FatI CATG 5 cut(s) 79, 106, 199, 222, 496
FauNDI CATATG 1 cut(s) 154
GsuI CTGGAG 1 cut(s) 429
Hin1II CATG 5 cut(s) 83, 110, 203, 226, 500
HindIII AAGCTT 1 cut(s) 461
HinfI GANTC 3 cut(s) 16, 23, 477
HphI GGTGA 1 cut(s) 296
Hpy166II GTNNAC 3 cut(s) 77, 122, 488
Hpy188I TCNGA 1 cut(s) 55
Hpy188III TCNNGA 4 cut(s) 13, 20, 195, 271
Hpy8I GTNNAC 3 cut(s) 77, 122, 488
HpyAV CCTTC 3 cut(s) 44, 158, 427
HpyCH4III ACNGT 1 cut(s) 232
HpyCH4V TGCA 4 cut(s) 77, 106, 183, 296
HpyF3I CTNAG 1 cut(s) 276
Hsp92II CATG 5 cut(s) 83, 110, 203, 226, 500
KspI CCGCGG 1 cut(s) 449
Kzo9I GATC 1 cut(s) 438
LpnPI CCDG 9 cut(s) 29, 138, 224, 333, 345, 353, 370, 393, 420
LweI GCATC 1 cut(s) 397
MalI GATC 1 cut(s) 440
MbiI CCGCTC 1 cut(s) 289
MboI GATC 1 cut(s) 438
MhlI GDGCHC 1 cut(s) 79
MluCI AATT 3 cut(s) 39, 57, 265
MlyI GAGTC 1 cut(s) 25
MnlI CCTC 2 cut(s) 20, 404
MroXI GAANNNNTTC 1 cut(s) 464
MseI TTAA 1 cut(s) 305
MslI CAYNNNNRTG 2 cut(s) 396, 495
MspA1I CMGCKG 1 cut(s) 448
MspR9I CCNGG 1 cut(s) 408
MvaI CCWGG 1 cut(s) 408
MvnI CGCG 1 cut(s) 448
NcoI CCATGG 1 cut(s) 222
NdeI CATATG 1 cut(s) 154
NdeII GATC 1 cut(s) 438
NlaIII CATG 5 cut(s) 83, 110, 203, 226, 500
PdmI GAANNNNTTC 1 cut(s) 464
PfeI GAWTC 2 cut(s) 23, 477
PleI GAGTC 1 cut(s) 24
PpsI GAGTC 1 cut(s) 24
PpuMI RGGWCCY 1 cut(s) 413
Psp5II RGGWCCY 1 cut(s) 413
Psp6I CCWGG 1 cut(s) 406
PspGI CCWGG 1 cut(s) 406
PspPI GGNCC 4 cut(s) 4, 158, 413, 443
PspPPI RGGWCCY 1 cut(s) 413
RseI CAYNNNNRTG 2 cut(s) 396, 495
Rsr2I CGGWCCG 1 cut(s) 443
RsrII CGGWCCG 1 cut(s) 443
SacII CCGCGG 1 cut(s) 449
SaqAI TTAA 1 cut(s) 305
Sau3AI GATC 1 cut(s) 438
Sau96I GGNCC 4 cut(s) 4, 158, 413, 443
SchI GAGTC 1 cut(s) 25
ScrFI CCNGG 1 cut(s) 408
SduI GDGCHC 1 cut(s) 79
SetI ASST 7 cut(s) 12, 127, 150, 169, 415, 432, 465
SfaNI GCATC 1 cut(s) 397
Sfr303I CCGCGG 1 cut(s) 449
SgrBI CCGCGG 1 cut(s) 449
SinI GGWCC 4 cut(s) 4, 158, 413, 443
SmiMI CAYNNNNRTG 2 cut(s) 396, 495
SmlI CTYRAG 1 cut(s) 11
SmoI CTYRAG 1 cut(s) 11
Sse9I AATT 3 cut(s) 39, 57, 265
SsiI CCGC 3 cut(s) 289, 446, 448
SspI AATATT 1 cut(s) 301
StyD4I CCNGG 1 cut(s) 406
StyI CCWWGG 1 cut(s) 222
TaaI ACNGT 1 cut(s) 232
TaqII GACCGA 1 cut(s) 431
TasI AATT 3 cut(s) 39, 57, 265
TfiI GAWTC 2 cut(s) 23, 477
Tru1I TTAA 1 cut(s) 305
Tru9I TTAA 1 cut(s) 305
TscAI CASTG 1 cut(s) 327
TspDTI ATGAA 2 cut(s) 123, 369
TspRI CASTG 1 cut(s) 327
VneI GTGCAC 1 cut(s) 75
VpaK11BI GGWCC 4 cut(s) 4, 158, 413, 443
XcmI CCANNNNNNNNNTGG 2 cut(s) 152, 229
XmnI GAANNNNTTC 1 cut(s) 464
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.