Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004660.1

Orthogroup ID

OG0002667

Physical Location & Seq

Genomic Coordinates Reverse (-)

15571 .. 20723

Gene Structure 5153 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004660.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

atgttgaggagaaatacgaggttagagaaggagtacttgttcaggaagagtaaagaaaccctagaacgcacgcagtacgagaagaagcgcaagataaggcaagctctacaagagggaaaaccaattcctactgaacttcgaaatgaagaggccaagcttcgtcaagaaatcgatctcgaagatgaaaacactgctgtcccaaggacacatatcgatgatgagtatgccaaagcatcagaaagagatcccaaaattttgctaactacttcccgggatccgagtgctccactaatacaattcacaaaggaactgaaacttatttttcctaatgcacaagtagtaaatcgtggtggtcaggttatttctgaaattgttgaaagttgccgtgcacatgactacacagatgttgtgttggttcatgaacatcgtggtagacctgatggtttgattgtatgccaccttccatatggaccaacagcttattttcaactatgcaatgtggtttcaagacatgacatcaaggacaagaaagccatgggaacggtgccacaggcttatccacatttgattattaacaatttcacgactaagttgggtgagcggacagcaaatattttaaagcatctttttccagtgccaaagccagatacaaaacgcataatcactttttcgaatgagcaggactacatttcattcaggcatcatatttatgacaagcctggaggtcctaaatccattgagctgaaggagattggtccgcggtttgagttgaagcttttcaaggtctgcaggtggacgggtaaaaggcaagtccataaaaatggtaaaggaaaaactttcattttcacaaaccaaatgaagcaaaatgattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Brix

Protein Analysis

290

Amino Acids

33.78

Weight (kDa)

9.54

Isoelectric Point (pI)

40.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002667)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63780
fragaria_vesca	FvH4_7g02470 FvH4_7g02470 FvH4_7g02470 FvH4_7g02470 FvH4_7g02470
malus_domestica	MD05G1030400.v1.1 MD10G1031800.v1.1
prunus_persica	Prupe.2G030400_v2.0.a1 Prupe.2G030400_v2.0.a1 Prupe.2G030400_v2.0.a1 Prupe.8G084800_v2.0.a1 Prupe.8G084800_v2.0.a1
pyrus_communis	pycom05g02160 pycom10g02010
rosa_chinensis	RchiOBHm_Chr1g0319831 RchiOBHm_Chr1g0320641 RchiOBHm_Chr1g0320961 RchiOBHm_Chr1g0321121
rosa_laevigata	RLG00000030450
rosa_multiflora	Rmu_sc0004627.1_g000009 Rmu_sc0004660.1_g000006 Rmu_sc0007977.1_g000009 Rmu_sc0008752.1_g000006
rosa_roxburghii	Rroxscaffold_160G00433730 Rroxscaffold_4G00328080
rosa_rugosa	Rorug01G0031000 Rorug01G0031100
rosa_samantha	Rh1AG043100 Rh1BG039800 Rh1CG043200 Rh1CG045200 Rh1DG022700 Rh1DG024200 Rh1DG025900 Rh1DG049600 Rh1DG049800
rosa_wichuraiana	Rw0G001080 Rw1G003660 Rw1G003780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	780
Acc36I	ACCTGC	1 cut(s)	780
AccB1I	GGYRCC	1 cut(s)	544
AccBSI	CCGCTC	1 cut(s)	601
AccI	GTMKAC	1 cut(s)	433
AccII	CGCG	1 cut(s)	760
AciI	CCGC	3 cut(s)	601, 758, 760
AclWI	GGATC	3 cut(s)	239, 269, 282
AcsI	RAATTY	1 cut(s)	252
AcuI	CTGAAG	1 cut(s)	764
AfaI	GTAC	2 cut(s)	35, 77
AgsI	TTSAA	5 cut(s)	377, 488, 507, 772, 781
AjnI	CCWGG	1 cut(s)	718
AloI	GAACNNNNNNTCC	2 cut(s)	23, 55
AluBI	AGCT	5 cut(s)	104, 157, 479, 742, 775
AluI	AGCT	5 cut(s)	104, 157, 479, 742, 775
Alw21I	GWGCWC	2 cut(s)	286, 391
Alw44I	GTGCAC	1 cut(s)	387
AlwI	GGATC	3 cut(s)	239, 269, 282
Ama87I	CYCGRG	1 cut(s)	270
AoxI	GGCC	1 cut(s)	150
ApaLI	GTGCAC	1 cut(s)	387
ApoI	RAATTY	1 cut(s)	252
Asp700I	GAANNNNTTC	1 cut(s)	776
AspLEI	GCGC	1 cut(s)	90
AspS9I	GGNCC	3 cut(s)	470, 725, 755
AsuC2I	CCSGG	2 cut(s)	271, 272
AsuHPI	GGTGA	1 cut(s)	608
AsuII	TTCGAA	2 cut(s)	139, 671
AvaI	CYCGRG	1 cut(s)	270
AvaII	GGWCC	3 cut(s)	470, 725, 755
BaeGI	GKGCMC	1 cut(s)	391
BamHI	GGATCC	1 cut(s)	274
BanI	GGYRCC	1 cut(s)	544
BarI	GAAGNNNNNNTAC	2 cut(s)	444, 476
Bbv12I	GWGCWC	2 cut(s)	286, 391
BccI	CCATC	1 cut(s)	434
BceAI	ACGGC	1 cut(s)	369
BciT130I	CCWGG	1 cut(s)	720
BcnI	CCSGG	2 cut(s)	271, 272
BfaI	CTAG	1 cut(s)	62
BfmI	CTRYAG	1 cut(s)	787
BfuAI	ACCTGC	1 cut(s)	780
BmcAI	AGTACT	1 cut(s)	35
Bme1390I	CCNGG	3 cut(s)	271, 272, 720
Bme18I	GGWCC	3 cut(s)	470, 725, 755
BmeT110I	CYCGRG	1 cut(s)	270
BmgT120I	GGNCC	3 cut(s)	470, 725, 755
BmiI	GGNNCC	2 cut(s)	276, 546
BmrFI	CCNGG	3 cut(s)	271, 272, 720
BmsI	GCATC	3 cut(s)	242, 631, 709
BpmI	CTGGAG	1 cut(s)	741
Bpu14I	TTCGAA	2 cut(s)	139, 671
BpuMI	CCSGG	2 cut(s)	271, 272
Bsa29I	ATCGAT	2 cut(s)	171, 213
BsaJI	CCNNGG	4 cut(s)	200, 270, 534, 758
BsaXI	ACNNNNNCTCC	2 cut(s)	23, 53
Bse1I	ACTGG	1 cut(s)	632
Bse3DI	GCAATG	1 cut(s)	502
BseBI	CCWGG	1 cut(s)	720
BseCI	ATCGAT	2 cut(s)	171, 213
BseDI	CCNNGG	4 cut(s)	200, 270, 534, 758
BseMI	GCAATG	1 cut(s)	502
BseNI	ACTGG	1 cut(s)	632
BseRI	GAGGAG	1 cut(s)	22
BseSI	GKGCMC	1 cut(s)	391
Bsh1236I	CGCG	1 cut(s)	760
BshFI	GGCC	1 cut(s)	152
BshNI	GGYRCC	1 cut(s)	544
BshVI	ATCGAT	2 cut(s)	171, 213
BsiHKAI	GWGCWC	2 cut(s)	286, 391
BsiHKCI	CYCGRG	1 cut(s)	270
BsiSI	CCGG	1 cut(s)	271
BslFI	GGGAC	1 cut(s)	182
BsmFI	GGGAC	1 cut(s)	182
BsnI	GGCC	1 cut(s)	152
BsoBI	CYCGRG	1 cut(s)	270
Bsp119I	TTCGAA	2 cut(s)	139, 671
Bsp1286I	GDGCHC	2 cut(s)	286, 391
Bsp143I	GATC	3 cut(s)	172, 244, 274
Bsp19I	CCATGG	1 cut(s)	534
BspACI	CCGC	3 cut(s)	601, 758, 760
BspANI	GGCC	1 cut(s)	152
BspDI	ATCGAT	2 cut(s)	171, 213
BspFNI	CGCG	1 cut(s)	760
BspHI	TCATGA	1 cut(s)	418
BspLI	GGNNCC	2 cut(s)	276, 546
BspMAI	CTGCAG	1 cut(s)	791
BspMI	ACCTGC	1 cut(s)	780
BspPI	GGATC	3 cut(s)	239, 269, 282
BspT104I	TTCGAA	2 cut(s)	139, 671
BspT107I	GGYRCC	1 cut(s)	544
BsrBI	CCGCTC	1 cut(s)	601
BsrDI	GCAATG	1 cut(s)	502
BsrI	ACTGG	1 cut(s)	632
BssECI	CCNNGG	4 cut(s)	200, 270, 534, 758
BssMI	GATC	3 cut(s)	172, 244, 274
BssT1I	CCWWGG	2 cut(s)	200, 534
Bst2UI	CCWGG	1 cut(s)	720
Bst4CI	ACNGT	1 cut(s)	544
Bst6I	CTCTTC	2 cut(s)	41, 141
BstBI	TTCGAA	2 cut(s)	139, 671
BstC8I	GCNNGC	2 cut(s)	71, 102
BstDEI	CTNAG	1 cut(s)	588
BstDSI	CCRYGG	2 cut(s)	534, 758
BstFNI	CGCG	1 cut(s)	760
BstHHI	GCGC	1 cut(s)	90
BstKTI	GATC	3 cut(s)	175, 247, 277
BstMBI	GATC	3 cut(s)	172, 244, 274
BstNI	CCWGG	1 cut(s)	720
BstSCI	CCNGG	3 cut(s)	269, 270, 718
BstSFI	CTRYAG	1 cut(s)	787
BstSLI	GKGCMC	1 cut(s)	391
BstUI	CGCG	1 cut(s)	760
BstX2I	RGATCY	2 cut(s)	244, 274
BstXI	CCANNNNNNTGG	1 cut(s)	821
BstYI	RGATCY	2 cut(s)	244, 274
Bsu15I	ATCGAT	2 cut(s)	171, 213
BsuRI	GGCC	1 cut(s)	152
BsuTUI	ATCGAT	2 cut(s)	171, 213
BtgI	CCRYGG	2 cut(s)	534, 758
BtsI	GCAGTG	1 cut(s)	189
BtsIMutI	CAGTG	2 cut(s)	189, 639
BveI	ACCTGC	1 cut(s)	780
Cac8I	GCNNGC	2 cut(s)	71, 102
CciI	TCATGA	1 cut(s)	418
CfoI	GCGC	1 cut(s)	90
Cfr13I	GGNCC	3 cut(s)	470, 725, 755
Cfr42I	CCGCGG	1 cut(s)	761
Cfr9I	CCCGGG	1 cut(s)	270
ClaI	ATCGAT	2 cut(s)	171, 213
Csp6I	GTAC	2 cut(s)	34, 76
CviAII	CATG	4 cut(s)	392, 419, 512, 535
CviQI	GTAC	2 cut(s)	34, 76
DdeI	CTNAG	1 cut(s)	588
DpnI	GATC	3 cut(s)	174, 246, 276
DpnII	GATC	3 cut(s)	172, 244, 274
DraI	TTTAAA	1 cut(s)	618
Eam1104I	CTCTTC	2 cut(s)	41, 141
EarI	CTCTTC	2 cut(s)	41, 141
Eco130I	CCWWGG	2 cut(s)	200, 534
Eco47I	GGWCC	3 cut(s)	470, 725, 755
Eco57I	CTGAAG	1 cut(s)	764
Eco88I	CYCGRG	1 cut(s)	270
EcoO109I	RGGNCCY	1 cut(s)	725
EcoRII	CCWGG	1 cut(s)	718
EcoT14I	CCWWGG	2 cut(s)	200, 534
ErhI	CCWWGG	2 cut(s)	200, 534
FaeI	CATG	4 cut(s)	395, 422, 515, 538
FalI	AAGNNNNNCTT	2 cut(s)	20, 52
FaqI	GGGAC	1 cut(s)	182
FatI	CATG	4 cut(s)	391, 418, 511, 534
FauNDI	CATATG	1 cut(s)	466
FblI	GTMKAC	1 cut(s)	433
FspBI	CTAG	1 cut(s)	62
GlaI	GCGC	1 cut(s)	89
GsuI	CTGGAG	1 cut(s)	741
HaeIII	GGCC	1 cut(s)	152
HapII	CCGG	1 cut(s)	271
HhaI	GCGC	1 cut(s)	90
Hin1II	CATG	4 cut(s)	395, 422, 515, 538
Hin6I	GCGC	1 cut(s)	88
HinP1I	GCGC	1 cut(s)	88
HindIII	AAGCTT	2 cut(s)	155, 773
HpaII	CCGG	1 cut(s)	271
HphI	GGTGA	1 cut(s)	608
Hpy166II	GTNNAC	3 cut(s)	389, 434, 795
Hpy188I	TCNGA	3 cut(s)	238, 279, 367
Hpy188III	TCNNGA	6 cut(s)	43, 164, 176, 419, 507, 583
Hpy8I	GTNNAC	3 cut(s)	389, 434, 795
HpyAV	CCTTC	3 cut(s)	22, 470, 739
HpyCH4III	ACNGT	1 cut(s)	544
HpyCH4V	TGCA	4 cut(s)	332, 389, 495, 789
HpyF3I	CTNAG	1 cut(s)	588
Hsp92II	CATG	4 cut(s)	395, 422, 515, 538
HspAI	GCGC	1 cut(s)	88
KspI	CCGCGG	1 cut(s)	761
Kzo9I	GATC	3 cut(s)	172, 244, 274
LmnI	GCTCC	1 cut(s)	289
LweI	GCATC	3 cut(s)	242, 631, 709
MaeI	CTAG	1 cut(s)	62
MalI	GATC	3 cut(s)	174, 246, 276
MbiI	CCGCTC	1 cut(s)	601
MboI	GATC	3 cut(s)	172, 244, 274
MboII	GAAGA	4 cut(s)	58, 94, 158, 191
MflI	RGATCY	2 cut(s)	244, 274
MhlI	GDGCHC	2 cut(s)	286, 391
MluCI	AATT	5 cut(s)	123, 252, 296, 369, 577
MnlI	CCTC	4 cut(s)	12, 106, 142, 716
MroXI	GAANNNNTTC	1 cut(s)	776
MseI	TTAA	3 cut(s)	573, 617, 871
MslI	CAYNNNNRTG	3 cut(s)	213, 708, 819
MspA1I	CMGCKG	1 cut(s)	760
MspI	CCGG	1 cut(s)	271
MspR9I	CCNGG	3 cut(s)	271, 272, 720
MvaI	CCWGG	1 cut(s)	720
MvnI	CGCG	1 cut(s)	760
NciI	CCSGG	2 cut(s)	271, 272
NcoI	CCATGG	1 cut(s)	534
NdeI	CATATG	1 cut(s)	466
NdeII	GATC	3 cut(s)	172, 244, 274
NlaIII	CATG	4 cut(s)	395, 422, 515, 538
NlaIV	GGNNCC	2 cut(s)	276, 546
NspV	TTCGAA	2 cut(s)	139, 671
PagI	TCATGA	1 cut(s)	418
PaqCI	CACCTGC	1 cut(s)	780
PdmI	GAANNNNTTC	1 cut(s)	776
PpuMI	RGGWCCY	1 cut(s)	725
Psp5II	RGGWCCY	1 cut(s)	725
Psp6I	CCWGG	1 cut(s)	718
PspGI	CCWGG	1 cut(s)	718
PspN4I	GGNNCC	2 cut(s)	276, 546
PspPI	GGNCC	3 cut(s)	470, 725, 755
PspPPI	RGGWCCY	1 cut(s)	725
PstI	CTGCAG	1 cut(s)	791
PsuI	RGATCY	2 cut(s)	244, 274
RsaI	GTAC	2 cut(s)	35, 77
RsaNI	GTAC	2 cut(s)	34, 76
RseI	CAYNNNNRTG	3 cut(s)	213, 708, 819
SacII	CCGCGG	1 cut(s)	761
SaqAI	TTAA	3 cut(s)	573, 617, 871
Sau3AI	GATC	3 cut(s)	172, 244, 274
Sau96I	GGNCC	3 cut(s)	470, 725, 755
ScaI	AGTACT	1 cut(s)	35
ScrFI	CCNGG	3 cut(s)	271, 272, 720
SduI	GDGCHC	2 cut(s)	286, 391
SfaNI	GCATC	3 cut(s)	242, 631, 709
SfcI	CTRYAG	1 cut(s)	787
Sfr303I	CCGCGG	1 cut(s)	761
SfuI	TTCGAA	2 cut(s)	139, 671
SgrBI	CCGCGG	1 cut(s)	761
SinI	GGWCC	3 cut(s)	470, 725, 755
SmaI	CCCGGG	1 cut(s)	272
SmiMI	CAYNNNNRTG	3 cut(s)	213, 708, 819
Sse9I	AATT	5 cut(s)	123, 252, 296, 369, 577
SsiI	CCGC	3 cut(s)	601, 758, 760
SspI	AATATT	1 cut(s)	613
SspMI	CTAG	1 cut(s)	62
StyD4I	CCNGG	3 cut(s)	269, 270, 718
StyI	CCWWGG	2 cut(s)	200, 534
TaaI	ACNGT	1 cut(s)	544
TaqI	TCGA	5 cut(s)	139, 171, 177, 213, 671
TasI	AATT	5 cut(s)	123, 252, 296, 369, 577
TatI	WGTACW	1 cut(s)	33
Tru1I	TTAA	3 cut(s)	573, 617, 871
Tru9I	TTAA	3 cut(s)	573, 617, 871
TscAI	CASTG	2 cut(s)	196, 639
TspDTI	ATGAA	7 cut(s)	159, 198, 407, 435, 681, 829, 872
TspMI	CCCGGG	1 cut(s)	270
TspRI	CASTG	2 cut(s)	196, 639
VneI	GTGCAC	1 cut(s)	387
VpaK11BI	GGWCC	3 cut(s)	470, 725, 755
XapI	RAATTY	1 cut(s)	252
XcmI	CCANNNNNNNNNTGG	1 cut(s)	464
XmaI	CCCGGG	1 cut(s)	270
XmiI	GTMKAC	1 cut(s)	433
XmnI	GAANNNNTTC	1 cut(s)	776
XspI	CTAG	1 cut(s)	62
ZrmI	AGTACT	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.