FvH4_7g02470

U3 small nucleolar ribonucleoprotein protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0002667
Physical Location & Seq
Reverse (-)
2739915 .. 2745347
5433 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g02470.t4

Sequence Viewer

Length: 882 bp
ATGTTGAGGAGAAATAGGAGGTTAGAGAAGGAGTACTTGTTCCGGAAAAGTAAAGAAACCCTAGAACGCAGCAAGTACGAGAAGAAGCGCAAGATTAGAGAAGCCGTGCAAGAGGGTAAACCGATTCCGACTGAGCTTCGAAATGAAGAGGCCCAGCTTCGCCAAGAGATCGATCTCGAAGATGAAAACACTGCTGTCCCGAGGACACATATCGATGATGAGTATGCCAAAGCATCAGAAAGAGATCCCAAAATTTTGCTAACTACTTCCAGGGATCCGAGTGCTCCACTAATACAATTCACGAAGGAACTGAAACTTGTATTTCCTAATGCACAAGTAGTGAATCGTGGTGGTCAGGTTATTTCTGAAATTGTTGAAAGTTGCCGTGCACATGACTACTCCGATGTTGTGTTGGTGCATGAACATAGGGGTAAACCTGATGGTTTGATCATATGCCACCTTCCTTATGGACCAACAGCTTATTTTCAACTATGCAATGTGGTTTCAAGACATGACATCAAGGACAAAAAAGCCATGGGAACAGTGCCACAGGCTTATCCACATTTGATCATTAACAATTTCACGACTAAGTTGGGTGAGCGGACAGCAAATATTCTAAAGCATCTTTTTCCAGTGCCAAAGCCAGATACAAAACGCATAATCACTTTTGCGAATAATCAGGACTACATTTCATTCAGGCATCATATTTATGACAAGCCCGGAGGTCCTAAATCCATTGAGCTGAAGGAGATTGGTCCCCGGTTTGAGTTGAAGCTTTTCAAGATAAAGTTGGGAACAGTGGATCAGGATGAAGCGCAGAATGAATGGGTGCTCAAACCTTACATGAACACAGCCAAGAAACAGAAGTTTTTAGGGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
Brix

Protein Analysis

294

Amino Acids

33.99

Weight (kDa)

9.32

Isoelectric Point (pI)

39.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Brix PF04427 90 - 261 4.4e-27 Brix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 601
AccIII TCCGGA 1 cut(s) 42
AciI CCGC 1 cut(s) 601
AclWI GGATC 4 cut(s) 239, 269, 282, 810
AcsI RAATTY 1 cut(s) 252
AcuI CTGAAG 1 cut(s) 764
AfaI GTAC 2 cut(s) 35, 77
AgsI TTSAA 5 cut(s) 377, 488, 507, 772, 781
AjnI CCWGG 1 cut(s) 269
AloI GAACNNNNNNTCC 2 cut(s) 23, 55
AluBI AGCT 5 cut(s) 136, 157, 479, 742, 775
AluI AGCT 5 cut(s) 136, 157, 479, 742, 775
Alw21I GWGCWC 3 cut(s) 286, 391, 834
Alw44I GTGCAC 1 cut(s) 387
AlwI GGATC 4 cut(s) 239, 269, 282, 810
Ama87I CYCGRG 1 cut(s) 199
Aor13HI TCCGGA 1 cut(s) 42
AoxI GGCC 1 cut(s) 150
ApaLI GTGCAC 1 cut(s) 387
ApeKI GCWGC 1 cut(s) 69
ApoI RAATTY 1 cut(s) 252
Asp700I GAANNNNTTC 1 cut(s) 776
AspLEI GCGC 2 cut(s) 90, 817
AspS9I GGNCC 4 cut(s) 151, 470, 725, 755
AsuC2I CCSGG 2 cut(s) 720, 760
AsuHPI GGTGA 1 cut(s) 608
AsuII TTCGAA 1 cut(s) 139
AvaI CYCGRG 1 cut(s) 199
AvaII GGWCC 3 cut(s) 470, 725, 755
BaeGI GKGCMC 1 cut(s) 391
BamHI GGATCC 1 cut(s) 274
Bbv12I GWGCWC 3 cut(s) 286, 391, 834
BbvI GCAGC 1 cut(s) 81
BccI CCATC 1 cut(s) 434
BceAI ACGGC 2 cut(s) 89, 369
BciT130I CCWGG 1 cut(s) 271
BclI TGATCA 2 cut(s) 447, 567
BcnI CCSGG 2 cut(s) 720, 760
BfaI CTAG 1 cut(s) 62
BisI GCNGC 1 cut(s) 70
BlsI GCNGC 1 cut(s) 71
BmcAI AGTACT 1 cut(s) 35
Bme1390I CCNGG 3 cut(s) 271, 720, 760
Bme18I GGWCC 3 cut(s) 470, 725, 755
BmeT110I CYCGRG 1 cut(s) 199
BmgT120I GGNCC 4 cut(s) 151, 470, 725, 755
BmiI GGNNCC 2 cut(s) 276, 757
BmrFI CCNGG 3 cut(s) 271, 720, 760
BmsI GCATC 3 cut(s) 242, 631, 709
Bpu14I TTCGAA 1 cut(s) 139
BpuMI CCSGG 2 cut(s) 720, 760
Bsa29I ATCGAT 2 cut(s) 171, 213
BsaJI CCNNGG 4 cut(s) 200, 270, 534, 758
BsaWI WCCGGW 1 cut(s) 42
BsaXI ACNNNNNCTCC 2 cut(s) 23, 53
Bse1I ACTGG 1 cut(s) 632
Bse3DI GCAATG 1 cut(s) 502
BseAI TCCGGA 1 cut(s) 42
BseBI CCWGG 1 cut(s) 271
BseCI ATCGAT 2 cut(s) 171, 213
BseDI CCNNGG 4 cut(s) 200, 270, 534, 758
BseGI GGATG 1 cut(s) 814
BseMI GCAATG 1 cut(s) 502
BseMII CTCAG 1 cut(s) 123
BseNI ACTGG 1 cut(s) 632
BseRI GAGGAG 1 cut(s) 22
BseSI GKGCMC 1 cut(s) 391
BseXI GCAGC 1 cut(s) 81
BseYI CCCAGC 1 cut(s) 153
BshFI GGCC 1 cut(s) 152
BshVI ATCGAT 2 cut(s) 171, 213
BsiHKAI GWGCWC 3 cut(s) 286, 391, 834
BsiHKCI CYCGRG 1 cut(s) 199
BsiSI CCGG 3 cut(s) 43, 720, 760
BslFI GGGAC 2 cut(s) 182, 741
BsmFI GGGAC 2 cut(s) 182, 741
BsnI GGCC 1 cut(s) 152
BsoBI CYCGRG 1 cut(s) 199
Bsp119I TTCGAA 1 cut(s) 139
Bsp1286I GDGCHC 3 cut(s) 286, 391, 834
Bsp13I TCCGGA 1 cut(s) 42
Bsp143I GATC 7 cut(s) 168, 172, 244, 274, 447, 567, 802
Bsp19I CCATGG 1 cut(s) 534
BspACI CCGC 1 cut(s) 601
BspANI GGCC 1 cut(s) 152
BspCNI CTCAG 1 cut(s) 124
BspDI ATCGAT 2 cut(s) 171, 213
BspEI TCCGGA 1 cut(s) 42
BspLI GGNNCC 2 cut(s) 276, 757
BspPI GGATC 4 cut(s) 239, 269, 282, 810
BspT104I TTCGAA 1 cut(s) 139
BsrBI CCGCTC 1 cut(s) 601
BsrDI GCAATG 1 cut(s) 502
BsrI ACTGG 1 cut(s) 632
BssECI CCNNGG 4 cut(s) 200, 270, 534, 758
BssMI GATC 7 cut(s) 168, 172, 244, 274, 447, 567, 802
BssT1I CCWWGG 1 cut(s) 534
Bst2UI CCWGG 1 cut(s) 271
Bst4CI ACNGT 2 cut(s) 544, 799
Bst6I CTCTTC 1 cut(s) 141
BstBI TTCGAA 1 cut(s) 139
BstDEI CTNAG 2 cut(s) 132, 588
BstDSI CCRYGG 1 cut(s) 534
BstF5I GGATG 1 cut(s) 814
BstHHI GCGC 2 cut(s) 90, 817
BstKTI GATC 7 cut(s) 171, 175, 247, 277, 450, 570, 805
BstMBI GATC 7 cut(s) 168, 172, 244, 274, 447, 567, 802
BstNI CCWGG 1 cut(s) 271
BstSCI CCNGG 3 cut(s) 269, 718, 758
BstSLI GKGCMC 1 cut(s) 391
BstV1I GCAGC 1 cut(s) 81
BstX2I RGATCY 2 cut(s) 244, 274
BstYI RGATCY 2 cut(s) 244, 274
Bsu15I ATCGAT 2 cut(s) 171, 213
BsuRI GGCC 1 cut(s) 152
BsuTUI ATCGAT 2 cut(s) 171, 213
BtgI CCRYGG 1 cut(s) 534
BtsCI GGATG 1 cut(s) 814
BtsI GCAGTG 1 cut(s) 189
BtsIMutI CAGTG 4 cut(s) 189, 549, 639, 804
CfoI GCGC 2 cut(s) 90, 817
Cfr13I GGNCC 4 cut(s) 151, 470, 725, 755
ClaI ATCGAT 2 cut(s) 171, 213
Csp6I GTAC 2 cut(s) 34, 76
CviAII CATG 5 cut(s) 392, 419, 512, 535, 844
CviQI GTAC 2 cut(s) 34, 76
DdeI CTNAG 2 cut(s) 132, 588
DpnI GATC 7 cut(s) 170, 174, 246, 276, 449, 569, 804
DpnII GATC 7 cut(s) 168, 172, 244, 274, 447, 567, 802
Eam1104I CTCTTC 1 cut(s) 141
EarI CTCTTC 1 cut(s) 141
Eco130I CCWWGG 1 cut(s) 534
Eco47I GGWCC 3 cut(s) 470, 725, 755
Eco57I CTGAAG 1 cut(s) 764
Eco88I CYCGRG 1 cut(s) 199
EcoO109I RGGNCCY 1 cut(s) 725
EcoRII CCWGG 1 cut(s) 269
EcoT14I CCWWGG 1 cut(s) 534
ErhI CCWWGG 1 cut(s) 534
FaeI CATG 5 cut(s) 395, 422, 515, 538, 847
FalI AAGNNNNNCTT 2 cut(s) 20, 52
FaqI GGGAC 2 cut(s) 182, 741
FatI CATG 5 cut(s) 391, 418, 511, 534, 843
FauNDI CATATG 1 cut(s) 452
FbaI TGATCA 2 cut(s) 447, 567
Fnu4HI GCNGC 1 cut(s) 70
FokI GGATG 1 cut(s) 821
Fsp4HI GCNGC 1 cut(s) 70
FspBI CTAG 1 cut(s) 62
GlaI GCGC 2 cut(s) 89, 816
GluI GCNGC 1 cut(s) 70
GsaI CCCAGC 1 cut(s) 157
HaeIII GGCC 1 cut(s) 152
HapII CCGG 3 cut(s) 43, 720, 760
HhaI GCGC 2 cut(s) 90, 817
Hin1II CATG 5 cut(s) 395, 422, 515, 538, 847
Hin6I GCGC 2 cut(s) 88, 815
HinP1I GCGC 2 cut(s) 88, 815
HindIII AAGCTT 1 cut(s) 773
HinfI GANTC 2 cut(s) 124, 343
HpaII CCGG 3 cut(s) 43, 720, 760
HphI GGTGA 1 cut(s) 608
Hpy166II GTNNAC 3 cut(s) 119, 389, 434
Hpy188I TCNGA 5 cut(s) 129, 238, 279, 367, 403
Hpy188III TCNNGA 9 cut(s) 43, 176, 199, 301, 507, 583, 680, 781, 806
Hpy8I GTNNAC 3 cut(s) 119, 389, 434
HpyAV CCTTC 4 cut(s) 22, 298, 470, 739
HpyCH4III ACNGT 2 cut(s) 544, 799
HpyCH4V TGCA 5 cut(s) 109, 332, 389, 418, 495
HpyF3I CTNAG 2 cut(s) 132, 588
Hsp92II CATG 5 cut(s) 395, 422, 515, 538, 847
HspAI GCGC 2 cut(s) 88, 815
Kpn2I TCCGGA 1 cut(s) 42
Ksp22I TGATCA 2 cut(s) 447, 567
Kzo9I GATC 7 cut(s) 168, 172, 244, 274, 447, 567, 802
LmnI GCTCC 1 cut(s) 289
Lsp1109I GCAGC 1 cut(s) 81
LweI GCATC 3 cut(s) 242, 631, 709
MaeI CTAG 1 cut(s) 62
MalI GATC 7 cut(s) 170, 174, 246, 276, 449, 569, 804
MbiI CCGCTC 1 cut(s) 601
MboI GATC 7 cut(s) 168, 172, 244, 274, 447, 567, 802
MboII GAAGA 3 cut(s) 94, 158, 191
MflI RGATCY 2 cut(s) 244, 274
MhlI GDGCHC 3 cut(s) 286, 391, 834
MluCI AATT 4 cut(s) 252, 296, 369, 577
MmeI TCCRAC 1 cut(s) 152
MnlI CCTC 5 cut(s) 12, 106, 142, 195, 716
MroI TCCGGA 1 cut(s) 42
MroXI GAANNNNTTC 1 cut(s) 776
MseI TTAA 1 cut(s) 573
MslI CAYNNNNRTG 2 cut(s) 213, 708
MspI CCGG 3 cut(s) 43, 720, 760
MspR9I CCNGG 3 cut(s) 271, 720, 760
MvaI CCWGG 1 cut(s) 271
NciI CCSGG 2 cut(s) 720, 760
NcoI CCATGG 1 cut(s) 534
NdeI CATATG 1 cut(s) 452
NdeII GATC 7 cut(s) 168, 172, 244, 274, 447, 567, 802
NlaIII CATG 5 cut(s) 395, 422, 515, 538, 847
NlaIV GGNNCC 2 cut(s) 276, 757
NspV TTCGAA 1 cut(s) 139
PdmI GAANNNNTTC 1 cut(s) 776
PfeI GAWTC 2 cut(s) 124, 343
PkrI GCNGC 1 cut(s) 71
PpuMI RGGWCCY 1 cut(s) 725
Psp5II RGGWCCY 1 cut(s) 725
Psp6I CCWGG 1 cut(s) 269
PspFI CCCAGC 1 cut(s) 153
PspGI CCWGG 1 cut(s) 269
PspN4I GGNNCC 2 cut(s) 276, 757
PspPI GGNCC 4 cut(s) 151, 470, 725, 755
PspPPI RGGWCCY 1 cut(s) 725
PsuI RGATCY 2 cut(s) 244, 274
RsaI GTAC 2 cut(s) 35, 77
RsaNI GTAC 2 cut(s) 34, 76
RseI CAYNNNNRTG 2 cut(s) 213, 708
SaqAI TTAA 1 cut(s) 573
SatI GCNGC 1 cut(s) 70
Sau3AI GATC 7 cut(s) 168, 172, 244, 274, 447, 567, 802
Sau96I GGNCC 4 cut(s) 151, 470, 725, 755
ScaI AGTACT 1 cut(s) 35
ScrFI CCNGG 3 cut(s) 271, 720, 760
SduI GDGCHC 3 cut(s) 286, 391, 834
SfaNI GCATC 3 cut(s) 242, 631, 709
SfuI TTCGAA 1 cut(s) 139
SinI GGWCC 3 cut(s) 470, 725, 755
SmiMI CAYNNNNRTG 2 cut(s) 213, 708
Sse9I AATT 4 cut(s) 252, 296, 369, 577
SsiI CCGC 1 cut(s) 601
SspI AATATT 1 cut(s) 613
SspMI CTAG 1 cut(s) 62
StyD4I CCNGG 3 cut(s) 269, 718, 758
StyI CCWWGG 1 cut(s) 534
TaaI ACNGT 2 cut(s) 544, 799
TaqI TCGA 4 cut(s) 139, 171, 177, 213
TasI AATT 4 cut(s) 252, 296, 369, 577
TatI WGTACW 1 cut(s) 33
TfiI GAWTC 2 cut(s) 124, 343
Tru1I TTAA 1 cut(s) 573
Tru9I TTAA 1 cut(s) 573
TscAI CASTG 4 cut(s) 196, 549, 639, 804
TseI GCWGC 1 cut(s) 69
TspDTI ATGAA 7 cut(s) 159, 198, 435, 681, 825, 837, 860
TspRI CASTG 4 cut(s) 196, 549, 639, 804
VneI GTGCAC 1 cut(s) 387
VpaK11BI GGWCC 3 cut(s) 470, 725, 755
XapI RAATTY 1 cut(s) 252
XcmI CCANNNNNNNNNTGG 1 cut(s) 464
XmnI GAANNNNTTC 1 cut(s) 776
XspI CTAG 1 cut(s) 62
ZrmI AGTACT 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.