RLG00000030450

U3 small nucleolar ribonucleoprotein protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0002667
Physical Location & Seq
Forward (+)
61573394 .. 61577929
4536 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030450

Sequence Viewer

Length: 882 bp
ATGTTGAGGAGAAATACGAGGTTAGAGAAGGAGTACTTGTTCAGGAAGAGTAAAGAAACCCTAGAACGCACGCAGTACGAGAAGAAGCGCAAGATAAGACAAGCTCTACAAGAGGGAAAACCAATTCCTACTGAGCTTCGAAATGAAGAGGCCAAGCTTCGTCAAGAGATCGATCTCGAAGATGAAAACACTGCTGTCCCAAGGACACATATCGATGATGAGTATGCCAAAGCATCAGAAAGAGATCCCAAAATTTTGCTAACTACTTCCCGGGATCCAAGTGCTCCACTAATACAATTCACAAAGTCATGTCTTTTTAATGTCCATACAAATGCATCTGTAAGGAATGGAGCTACTGTTATTTCTGAAATTGTTGAAAGTTGCCGTGCACATGACTACACAGATGTTGTGTTGGTGCATGAACATCGTGGTAAACCTGATGGTTTGATTGTATGCCACCTTCCATATGGACCAACAGCTTATTTTCAACTATGCAATGTGGTTTCAAGACATGACATCAAGGACAAGAAAGCCATGGGAACGGTGCCACAGGCTTATCCACATTTGATTATTAACAATTTCACGACTAAGTTGGGTGAGCGGACAGCAAATATTTTAAAGCATCTTTTTCCAGTGCCAAAGCCAGATACAAAACGCATAATCACTTTTTCGAATGAGCAGGACTACATTTCATTCAGGCATCATATTTATGACAAGCCTGGAGGTCCTAAATCCATTGAGCTGAAGGAGATTGGTCCGCGGTTTGAGTTGAAGCTCTTCAAGATAAAGTTAGGAACAGTGGATCAGAATGAAGCCCAAAATGAATGGGTCCTCAAACCGTACATGAACACCGCCAAGAAACAGAAGTTTATCGGGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
Brix

Protein Analysis

294

Amino Acids

33.92

Weight (kDa)

9.29

Isoelectric Point (pI)

37.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Brix PF04427 108 - 261 1.4e-25 Brix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 544
AccBSI CCGCTC 1 cut(s) 601
AccII CGCG 1 cut(s) 760
AciI CCGC 4 cut(s) 601, 758, 760, 852
AclWI GGATC 4 cut(s) 239, 269, 282, 810
AcsI RAATTY 1 cut(s) 252
AcuI CTGAAG 1 cut(s) 764
AfaI GTAC 3 cut(s) 35, 77, 842
AgsI TTSAA 5 cut(s) 377, 488, 507, 772, 781
AjnI CCWGG 1 cut(s) 718
AloI GAACNNNNNNTCC 2 cut(s) 23, 55
AluBI AGCT 7 cut(s) 104, 136, 157, 353, 479, 742, 775
AluI AGCT 7 cut(s) 104, 136, 157, 353, 479, 742, 775
Alw21I GWGCWC 2 cut(s) 286, 391
Alw44I GTGCAC 1 cut(s) 387
AlwI GGATC 4 cut(s) 239, 269, 282, 810
Ama87I CYCGRG 1 cut(s) 270
AoxI GGCC 1 cut(s) 150
ApaLI GTGCAC 1 cut(s) 387
ApoI RAATTY 1 cut(s) 252
Asp700I GAANNNNTTC 1 cut(s) 776
AspLEI GCGC 1 cut(s) 90
AspS9I GGNCC 4 cut(s) 470, 725, 755, 829
AsuC2I CCSGG 2 cut(s) 271, 272
AsuHPI GGTGA 1 cut(s) 608
AsuII TTCGAA 2 cut(s) 139, 671
AvaI CYCGRG 1 cut(s) 270
AvaII GGWCC 4 cut(s) 470, 725, 755, 829
BaeGI GKGCMC 1 cut(s) 391
BamHI GGATCC 1 cut(s) 274
BanI GGYRCC 1 cut(s) 544
BarI GAAGNNNNNNTAC 2 cut(s) 444, 476
Bbv12I GWGCWC 2 cut(s) 286, 391
BccI CCATC 1 cut(s) 434
BceAI ACGGC 1 cut(s) 369
BcgI CGANNNNNNTGC 2 cut(s) 407, 441
BciT130I CCWGG 1 cut(s) 720
BcnI CCSGG 2 cut(s) 271, 272
BfaI CTAG 1 cut(s) 62
BmcAI AGTACT 1 cut(s) 35
Bme1390I CCNGG 3 cut(s) 271, 272, 720
Bme18I GGWCC 4 cut(s) 470, 725, 755, 829
BmeT110I CYCGRG 1 cut(s) 270
BmgT120I GGNCC 4 cut(s) 470, 725, 755, 829
BmiI GGNNCC 3 cut(s) 276, 546, 830
BmrFI CCNGG 3 cut(s) 271, 272, 720
BmsI GCATC 4 cut(s) 242, 344, 631, 709
BpmI CTGGAG 1 cut(s) 741
Bpu14I TTCGAA 2 cut(s) 139, 671
BpuMI CCSGG 2 cut(s) 271, 272
Bsa29I ATCGAT 2 cut(s) 171, 213
BsaJI CCNNGG 4 cut(s) 200, 270, 534, 758
BsaXI ACNNNNNCTCC 4 cut(s) 23, 53, 342, 372
Bse1I ACTGG 1 cut(s) 632
Bse3DI GCAATG 1 cut(s) 502
BseBI CCWGG 1 cut(s) 720
BseCI ATCGAT 2 cut(s) 171, 213
BseDI CCNNGG 4 cut(s) 200, 270, 534, 758
BseMI GCAATG 1 cut(s) 502
BseMII CTCAG 1 cut(s) 123
BseNI ACTGG 1 cut(s) 632
BseRI GAGGAG 1 cut(s) 22
BseSI GKGCMC 1 cut(s) 391
Bsh1236I CGCG 1 cut(s) 760
BshFI GGCC 1 cut(s) 152
BshNI GGYRCC 1 cut(s) 544
BshVI ATCGAT 2 cut(s) 171, 213
BsiHKAI GWGCWC 2 cut(s) 286, 391
BsiHKCI CYCGRG 1 cut(s) 270
BsiSI CCGG 1 cut(s) 271
BslFI GGGAC 1 cut(s) 182
BsmFI GGGAC 1 cut(s) 182
BsnI GGCC 1 cut(s) 152
BsoBI CYCGRG 1 cut(s) 270
Bsp119I TTCGAA 2 cut(s) 139, 671
Bsp1286I GDGCHC 2 cut(s) 286, 391
Bsp143I GATC 5 cut(s) 168, 172, 244, 274, 802
Bsp19I CCATGG 1 cut(s) 534
BspACI CCGC 4 cut(s) 601, 758, 760, 852
BspANI GGCC 1 cut(s) 152
BspCNI CTCAG 1 cut(s) 124
BspDI ATCGAT 2 cut(s) 171, 213
BspFNI CGCG 1 cut(s) 760
BspLI GGNNCC 3 cut(s) 276, 546, 830
BspPI GGATC 4 cut(s) 239, 269, 282, 810
BspQI GCTCTTC 1 cut(s) 782
BspT104I TTCGAA 2 cut(s) 139, 671
BspT107I GGYRCC 1 cut(s) 544
BsrBI CCGCTC 1 cut(s) 601
BsrDI GCAATG 1 cut(s) 502
BsrI ACTGG 1 cut(s) 632
BssECI CCNNGG 4 cut(s) 200, 270, 534, 758
BssMI GATC 5 cut(s) 168, 172, 244, 274, 802
BssT1I CCWWGG 2 cut(s) 200, 534
Bst2UI CCWGG 1 cut(s) 720
Bst4CI ACNGT 4 cut(s) 358, 544, 799, 840
Bst6I CTCTTC 3 cut(s) 41, 141, 782
BstBI TTCGAA 2 cut(s) 139, 671
BstC8I GCNNGC 1 cut(s) 71
BstDEI CTNAG 2 cut(s) 132, 588
BstDSI CCRYGG 2 cut(s) 534, 758
BstFNI CGCG 1 cut(s) 760
BstHHI GCGC 1 cut(s) 90
BstKTI GATC 5 cut(s) 171, 175, 247, 277, 805
BstMBI GATC 5 cut(s) 168, 172, 244, 274, 802
BstNI CCWGG 1 cut(s) 720
BstSCI CCNGG 3 cut(s) 269, 270, 718
BstSLI GKGCMC 1 cut(s) 391
BstUI CGCG 1 cut(s) 760
BstX2I RGATCY 2 cut(s) 244, 274
BstYI RGATCY 2 cut(s) 244, 274
Bsu15I ATCGAT 2 cut(s) 171, 213
BsuRI GGCC 1 cut(s) 152
BsuTUI ATCGAT 2 cut(s) 171, 213
BtgI CCRYGG 2 cut(s) 534, 758
BtsI GCAGTG 1 cut(s) 189
BtsIMutI CAGTG 3 cut(s) 189, 639, 804
Cac8I GCNNGC 1 cut(s) 71
CfoI GCGC 1 cut(s) 90
Cfr13I GGNCC 4 cut(s) 470, 725, 755, 829
Cfr42I CCGCGG 1 cut(s) 761
Cfr9I CCCGGG 1 cut(s) 270
ClaI ATCGAT 2 cut(s) 171, 213
Csp6I GTAC 3 cut(s) 34, 76, 841
CviAII CATG 6 cut(s) 309, 392, 419, 512, 535, 844
CviQI GTAC 3 cut(s) 34, 76, 841
DdeI CTNAG 2 cut(s) 132, 588
DpnI GATC 5 cut(s) 170, 174, 246, 276, 804
DpnII GATC 5 cut(s) 168, 172, 244, 274, 802
DraI TTTAAA 1 cut(s) 618
Eam1104I CTCTTC 3 cut(s) 41, 141, 782
EarI CTCTTC 3 cut(s) 41, 141, 782
Eco130I CCWWGG 2 cut(s) 200, 534
Eco47I GGWCC 4 cut(s) 470, 725, 755, 829
Eco57I CTGAAG 1 cut(s) 764
Eco88I CYCGRG 1 cut(s) 270
EcoO109I RGGNCCY 2 cut(s) 725, 829
EcoRII CCWGG 1 cut(s) 718
EcoT14I CCWWGG 2 cut(s) 200, 534
EcoT22I ATGCAT 1 cut(s) 337
ErhI CCWWGG 2 cut(s) 200, 534
FaeI CATG 6 cut(s) 312, 395, 422, 515, 538, 847
FalI AAGNNNNNCTT 2 cut(s) 20, 52
FaqI GGGAC 1 cut(s) 182
FatI CATG 6 cut(s) 308, 391, 418, 511, 534, 843
FauNDI CATATG 1 cut(s) 466
FspBI CTAG 1 cut(s) 62
GlaI GCGC 1 cut(s) 89
GsuI CTGGAG 1 cut(s) 741
HaeIII GGCC 1 cut(s) 152
HapII CCGG 1 cut(s) 271
HhaI GCGC 1 cut(s) 90
Hin1II CATG 6 cut(s) 312, 395, 422, 515, 538, 847
Hin6I GCGC 1 cut(s) 88
HinP1I GCGC 1 cut(s) 88
HindIII AAGCTT 1 cut(s) 155
HpaII CCGG 1 cut(s) 271
HphI GGTGA 1 cut(s) 608
Hpy166II GTNNAC 2 cut(s) 389, 434
Hpy188I TCNGA 3 cut(s) 238, 367, 807
Hpy188III TCNNGA 7 cut(s) 43, 164, 176, 507, 583, 781, 874
Hpy8I GTNNAC 2 cut(s) 389, 434
HpyAV CCTTC 3 cut(s) 22, 470, 739
HpyCH4III ACNGT 4 cut(s) 358, 544, 799, 840
HpyCH4V TGCA 4 cut(s) 335, 389, 418, 495
HpyF3I CTNAG 2 cut(s) 132, 588
Hsp92II CATG 6 cut(s) 312, 395, 422, 515, 538, 847
HspAI GCGC 1 cut(s) 88
KspI CCGCGG 1 cut(s) 761
Kzo9I GATC 5 cut(s) 168, 172, 244, 274, 802
LguI GCTCTTC 1 cut(s) 782
LmnI GCTCC 2 cut(s) 289, 350
LweI GCATC 4 cut(s) 242, 344, 631, 709
MaeI CTAG 1 cut(s) 62
MalI GATC 5 cut(s) 170, 174, 246, 276, 804
MbiI CCGCTC 1 cut(s) 601
MboI GATC 5 cut(s) 168, 172, 244, 274, 802
MboII GAAGA 5 cut(s) 58, 94, 158, 191, 769
MflI RGATCY 2 cut(s) 244, 274
MhlI GDGCHC 2 cut(s) 286, 391
MluCI AATT 6 cut(s) 123, 252, 296, 369, 577, 877
MnlI CCTC 5 cut(s) 12, 106, 142, 716, 842
Mph1103I ATGCAT 1 cut(s) 337
MroXI GAANNNNTTC 1 cut(s) 776
MseI TTAA 3 cut(s) 318, 573, 617
MslI CAYNNNNRTG 3 cut(s) 213, 330, 708
MspA1I CMGCKG 1 cut(s) 760
MspI CCGG 1 cut(s) 271
MspR9I CCNGG 3 cut(s) 271, 272, 720
MvaI CCWGG 1 cut(s) 720
MvnI CGCG 1 cut(s) 760
NciI CCSGG 2 cut(s) 271, 272
NcoI CCATGG 1 cut(s) 534
NdeI CATATG 1 cut(s) 466
NdeII GATC 5 cut(s) 168, 172, 244, 274, 802
NlaIII CATG 6 cut(s) 312, 395, 422, 515, 538, 847
NlaIV GGNNCC 3 cut(s) 276, 546, 830
NsiI ATGCAT 1 cut(s) 337
NspV TTCGAA 2 cut(s) 139, 671
PciSI GCTCTTC 1 cut(s) 782
PdmI GAANNNNTTC 1 cut(s) 776
PpuMI RGGWCCY 2 cut(s) 725, 829
Psp5II RGGWCCY 2 cut(s) 725, 829
Psp6I CCWGG 1 cut(s) 718
PspGI CCWGG 1 cut(s) 718
PspN4I GGNNCC 3 cut(s) 276, 546, 830
PspPI GGNCC 4 cut(s) 470, 725, 755, 829
PspPPI RGGWCCY 2 cut(s) 725, 829
PsuI RGATCY 2 cut(s) 244, 274
RsaI GTAC 3 cut(s) 35, 77, 842
RsaNI GTAC 3 cut(s) 34, 76, 841
RseI CAYNNNNRTG 3 cut(s) 213, 330, 708
SacII CCGCGG 1 cut(s) 761
SapI GCTCTTC 1 cut(s) 782
SaqAI TTAA 3 cut(s) 318, 573, 617
Sau3AI GATC 5 cut(s) 168, 172, 244, 274, 802
Sau96I GGNCC 4 cut(s) 470, 725, 755, 829
ScaI AGTACT 1 cut(s) 35
ScrFI CCNGG 3 cut(s) 271, 272, 720
SduI GDGCHC 2 cut(s) 286, 391
SfaNI GCATC 4 cut(s) 242, 344, 631, 709
Sfr303I CCGCGG 1 cut(s) 761
SfuI TTCGAA 2 cut(s) 139, 671
SgrBI CCGCGG 1 cut(s) 761
SinI GGWCC 4 cut(s) 470, 725, 755, 829
SmaI CCCGGG 1 cut(s) 272
SmiMI CAYNNNNRTG 3 cut(s) 213, 330, 708
Sse9I AATT 6 cut(s) 123, 252, 296, 369, 577, 877
SsiI CCGC 4 cut(s) 601, 758, 760, 852
SspI AATATT 1 cut(s) 613
SspMI CTAG 1 cut(s) 62
StyD4I CCNGG 3 cut(s) 269, 270, 718
StyI CCWWGG 2 cut(s) 200, 534
TaaI ACNGT 4 cut(s) 358, 544, 799, 840
TaqI TCGA 5 cut(s) 139, 171, 177, 213, 671
TasI AATT 6 cut(s) 123, 252, 296, 369, 577, 877
TatI WGTACW 1 cut(s) 33
Tru1I TTAA 3 cut(s) 318, 573, 617
Tru9I TTAA 3 cut(s) 318, 573, 617
TscAI CASTG 3 cut(s) 196, 639, 804
TspDTI ATGAA 7 cut(s) 159, 198, 435, 681, 825, 837, 860
TspMI CCCGGG 1 cut(s) 270
TspRI CASTG 3 cut(s) 196, 639, 804
VneI GTGCAC 1 cut(s) 387
VpaK11BI GGWCC 4 cut(s) 470, 725, 755, 829
XapI RAATTY 1 cut(s) 252
XcmI CCANNNNNNNNNTGG 1 cut(s) 464
XmaI CCCGGG 1 cut(s) 270
XmnI GAANNNNTTC 1 cut(s) 776
XspI CTAG 1 cut(s) 62
ZrmI AGTACT 1 cut(s) 35
Zsp2I ATGCAT 1 cut(s) 337
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.