Rw1G003660

U3 small nucleolar ribonucleoprotein protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0002667
Physical Location & Seq
Reverse (-)
6790260 .. 6791500
1241 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G003660.1

Sequence Viewer

Length: 426 bp
GTTATTTCTGAAATTGTTGAAAGTTGCCGTGCACATGACTACACAGATGTTGTGTTGGTGCATGAACATCATGGTAAACCTGATGGTTTGATTGTATGCCACCTTCCATATGGACCAACAGCTTATTTTCGACTATGCAATGTGGTTTCAAGACATGACATCAAGGACAAGAAAGCCATGGGAACGGTGCCACAGGCTTATCCACATTTGATAATTAACAATTTCATGACTAAGTTGGGTGAGCGGACTGCAAATATTTTAAAACATCTTTTTCCAGTGCCAAAGCCAGATACAAAACGCATAATCACTTTTTCGAATGAGCAGGACTACATTTCATTCAGGCATCATATTTATGACAAGCCTGGAGGTCCTAAATCCATTGAGCTGAAGGAGATTGTTCCGCGGTTTGAGTTGAAGCTTTTCAAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
Brix

Protein Analysis

142

Amino Acids

16.37

Weight (kDa)

8.96

Isoelectric Point (pI)

35.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Brix PF04427 10 - 142 1.2e-23 Brix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 187
AccBSI CCGCTC 1 cut(s) 244
AccII CGCG 1 cut(s) 403
AciI CCGC 3 cut(s) 244, 401, 403
AcuI CTGAAG 1 cut(s) 407
AgsI TTSAA 4 cut(s) 20, 150, 415, 424
AjnI CCWGG 1 cut(s) 361
AluBI AGCT 3 cut(s) 122, 385, 418
AluI AGCT 3 cut(s) 122, 385, 418
Alw21I GWGCWC 1 cut(s) 34
Alw44I GTGCAC 1 cut(s) 30
ApaLI GTGCAC 1 cut(s) 30
Asp700I GAANNNNTTC 1 cut(s) 419
AspS9I GGNCC 2 cut(s) 113, 368
AsuHPI GGTGA 1 cut(s) 251
AsuII TTCGAA 1 cut(s) 314
AvaII GGWCC 2 cut(s) 113, 368
BaeGI GKGCMC 1 cut(s) 34
BanI GGYRCC 1 cut(s) 187
BarI GAAGNNNNNNTAC 2 cut(s) 87, 119
Bbv12I GWGCWC 1 cut(s) 34
BccI CCATC 1 cut(s) 77
BceAI ACGGC 1 cut(s) 12
BciT130I CCWGG 1 cut(s) 363
Bme1390I CCNGG 1 cut(s) 363
Bme18I GGWCC 2 cut(s) 113, 368
BmgT120I GGNCC 2 cut(s) 113, 368
BmiI GGNNCC 1 cut(s) 189
BmrFI CCNGG 1 cut(s) 363
BmsI GCATC 1 cut(s) 352
BpmI CTGGAG 1 cut(s) 384
Bpu14I TTCGAA 1 cut(s) 314
BsaJI CCNNGG 2 cut(s) 177, 401
Bse1I ACTGG 1 cut(s) 275
Bse3DI GCAATG 1 cut(s) 145
BseBI CCWGG 1 cut(s) 363
BseDI CCNNGG 2 cut(s) 177, 401
BseMI GCAATG 1 cut(s) 145
BseNI ACTGG 1 cut(s) 275
BseSI GKGCMC 1 cut(s) 34
Bsh1236I CGCG 1 cut(s) 403
BshNI GGYRCC 1 cut(s) 187
BsiHKAI GWGCWC 1 cut(s) 34
Bsp119I TTCGAA 1 cut(s) 314
Bsp1286I GDGCHC 1 cut(s) 34
Bsp19I CCATGG 1 cut(s) 177
BspACI CCGC 3 cut(s) 244, 401, 403
BspFNI CGCG 1 cut(s) 403
BspHI TCATGA 1 cut(s) 225
BspLI GGNNCC 1 cut(s) 189
BspT104I TTCGAA 1 cut(s) 314
BspT107I GGYRCC 1 cut(s) 187
BsrBI CCGCTC 1 cut(s) 244
BsrDI GCAATG 1 cut(s) 145
BsrI ACTGG 1 cut(s) 275
BssECI CCNNGG 2 cut(s) 177, 401
BssT1I CCWWGG 1 cut(s) 177
Bst2UI CCWGG 1 cut(s) 363
Bst4CI ACNGT 1 cut(s) 187
BstBI TTCGAA 1 cut(s) 314
BstDEI CTNAG 1 cut(s) 231
BstDSI CCRYGG 2 cut(s) 177, 401
BstFNI CGCG 1 cut(s) 403
BstNI CCWGG 1 cut(s) 363
BstSCI CCNGG 1 cut(s) 361
BstSLI GKGCMC 1 cut(s) 34
BstUI CGCG 1 cut(s) 403
BtgI CCRYGG 2 cut(s) 177, 401
BtsIMutI CAGTG 1 cut(s) 282
CciI TCATGA 1 cut(s) 225
Cfr13I GGNCC 2 cut(s) 113, 368
Cfr42I CCGCGG 1 cut(s) 404
CviAII CATG 6 cut(s) 35, 62, 71, 155, 178, 226
CviJI RGCY 7 cut(s) 122, 176, 197, 286, 361, 385, 418
CviKI_1 RGCY 7 cut(s) 122, 176, 197, 286, 361, 385, 418
DdeI CTNAG 1 cut(s) 231
DraI TTTAAA 1 cut(s) 261
Eco130I CCWWGG 1 cut(s) 177
Eco47I GGWCC 2 cut(s) 113, 368
Eco57I CTGAAG 1 cut(s) 407
EcoO109I RGGNCCY 1 cut(s) 368
EcoRII CCWGG 1 cut(s) 361
EcoT14I CCWWGG 1 cut(s) 177
ErhI CCWWGG 1 cut(s) 177
FaeI CATG 6 cut(s) 38, 65, 74, 158, 181, 229
FatI CATG 6 cut(s) 34, 61, 70, 154, 177, 225
FauNDI CATATG 1 cut(s) 109
GsuI CTGGAG 1 cut(s) 384
Hin1II CATG 6 cut(s) 38, 65, 74, 158, 181, 229
HindIII AAGCTT 1 cut(s) 416
HphI GGTGA 1 cut(s) 251
Hpy166II GTNNAC 2 cut(s) 32, 77
Hpy188I TCNGA 1 cut(s) 10
Hpy188III TCNNGA 2 cut(s) 150, 226
Hpy8I GTNNAC 2 cut(s) 32, 77
HpyAV CCTTC 2 cut(s) 113, 382
HpyCH4III ACNGT 1 cut(s) 187
HpyCH4V TGCA 4 cut(s) 32, 61, 138, 251
HpyF3I CTNAG 1 cut(s) 231
Hsp92II CATG 6 cut(s) 38, 65, 74, 158, 181, 229
KspI CCGCGG 1 cut(s) 404
LpnPI CCDG 8 cut(s) 93, 179, 288, 300, 308, 325, 348, 375
LweI GCATC 1 cut(s) 352
MbiI CCGCTC 1 cut(s) 244
MhlI GDGCHC 1 cut(s) 34
MluCI AATT 3 cut(s) 12, 213, 220
MnlI CCTC 1 cut(s) 359
MroXI GAANNNNTTC 1 cut(s) 419
MseI TTAA 2 cut(s) 216, 260
MslI CAYNNNNRTG 1 cut(s) 351
MspA1I CMGCKG 1 cut(s) 403
MspR9I CCNGG 1 cut(s) 363
MvaI CCWGG 1 cut(s) 363
MvnI CGCG 1 cut(s) 403
NcoI CCATGG 1 cut(s) 177
NdeI CATATG 1 cut(s) 109
NlaIII CATG 6 cut(s) 38, 65, 74, 158, 181, 229
NlaIV GGNNCC 1 cut(s) 189
NspV TTCGAA 1 cut(s) 314
PagI TCATGA 1 cut(s) 225
PdmI GAANNNNTTC 1 cut(s) 419
PpuMI RGGWCCY 1 cut(s) 368
Psp5II RGGWCCY 1 cut(s) 368
Psp6I CCWGG 1 cut(s) 361
PspGI CCWGG 1 cut(s) 361
PspN4I GGNNCC 1 cut(s) 189
PspPI GGNCC 2 cut(s) 113, 368
PspPPI RGGWCCY 1 cut(s) 368
RseI CAYNNNNRTG 1 cut(s) 351
SacII CCGCGG 1 cut(s) 404
SaqAI TTAA 2 cut(s) 216, 260
Sau96I GGNCC 2 cut(s) 113, 368
ScrFI CCNGG 1 cut(s) 363
SduI GDGCHC 1 cut(s) 34
SetI ASST 6 cut(s) 82, 105, 124, 370, 387, 420
SfaNI GCATC 1 cut(s) 352
Sfr303I CCGCGG 1 cut(s) 404
SfuI TTCGAA 1 cut(s) 314
SgrBI CCGCGG 1 cut(s) 404
SinI GGWCC 2 cut(s) 113, 368
SmiMI CAYNNNNRTG 1 cut(s) 351
Sse9I AATT 3 cut(s) 12, 213, 220
SsiI CCGC 3 cut(s) 244, 401, 403
SspI AATATT 1 cut(s) 256
StyD4I CCNGG 1 cut(s) 361
StyI CCWWGG 1 cut(s) 177
TaaI ACNGT 1 cut(s) 187
TaqI TCGA 2 cut(s) 130, 314
TasI AATT 3 cut(s) 12, 213, 220
Tru1I TTAA 2 cut(s) 216, 260
Tru9I TTAA 2 cut(s) 216, 260
TscAI CASTG 1 cut(s) 282
TspDTI ATGAA 3 cut(s) 78, 214, 324
TspRI CASTG 1 cut(s) 282
VneI GTGCAC 1 cut(s) 30
VpaK11BI GGWCC 2 cut(s) 113, 368
XcmI CCANNNNNNNNNTGG 1 cut(s) 107
XmnI GAANNNNTTC 1 cut(s) 419
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.