RchiOBHm_Chr1g0320961

U3 small nucleolar ribonucleoprotein protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0002667
Physical Location & Seq
Reverse (-)
8455123 .. 8465760
10638 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55105

Sequence Viewer

Length: 552 bp
ATGGACCACCTCAAGAGTCTTGATTCACGCACCCTTCTAATTCTGGTTATTTCTGAAATTGTTGAAAGTTGCCGTGCACATGACTACACAGATGTTGTGTTGGTGCATGAACATCGTGGTAAACCTGATGGTTTGATTGTATGCCACCTTCCATATGGACCAACAGCTTATTTTCAACTATGCAATGTGGTTTCAAGACATGACATCAAGGACAAGAAAGCCATGGGAACGGTGCCACAGGCTTATCCACATTTGATAATTAACAATTTCACGACTAAGTTGGGTGAGCGGACTGCAAATATTTTAAAACATCTTTTTCCAGTGCCAAAGCCAGATACAAAACGCATAATCACTTTTTCGAATGAGCAGGACTACATTTCATTCAGGCATCATATTTATGACAAGCCTGGAGGTCCTAAATCCATTGAGCTGAAGGAGATTGGTCCGCGGTTTGAGTTGATCCTTTTTCTGTATGGGTCATGTCAAACATGTACACTCTGGTCTGATTTCTACCCCAGAGTAGGATTTTGGTGCCTGCAATTGCATGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
Brix

Protein Analysis

183

Amino Acids

21.12

Weight (kDa)

7.7

Isoelectric Point (pI)

42.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Brix PF04427 22 - 155 4.6e-24 Brix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 232, 531
AccBSI CCGCTC 1 cut(s) 289
AccII CGCG 1 cut(s) 448
AciI CCGC 3 cut(s) 289, 446, 448
AclWI GGATC 1 cut(s) 454
AcuI CTGAAG 1 cut(s) 452
AfaI GTAC 1 cut(s) 493
AfiI CCNNNNNNNGG 1 cut(s) 521
AflIII ACRYGT 1 cut(s) 488
AgsI TTSAA 3 cut(s) 65, 176, 195
AjnI CCWGG 1 cut(s) 406
AluBI AGCT 2 cut(s) 167, 430
AluI AGCT 2 cut(s) 167, 430
Alw21I GWGCWC 1 cut(s) 79
Alw44I GTGCAC 1 cut(s) 75
AlwI GGATC 1 cut(s) 454
ApaLI GTGCAC 1 cut(s) 75
AspS9I GGNCC 4 cut(s) 4, 158, 413, 443
AsuHPI GGTGA 1 cut(s) 296
AsuII TTCGAA 1 cut(s) 359
AvaII GGWCC 4 cut(s) 4, 158, 413, 443
BaeGI GKGCMC 1 cut(s) 79
BanI GGYRCC 2 cut(s) 232, 531
BarI GAAGNNNNNNTAC 2 cut(s) 132, 164
Bbv12I GWGCWC 1 cut(s) 79
BccI CCATC 1 cut(s) 122
BceAI ACGGC 1 cut(s) 57
BcgI CGANNNNNNTGC 2 cut(s) 95, 129
BciT130I CCWGG 1 cut(s) 408
Bme1390I CCNGG 1 cut(s) 408
Bme18I GGWCC 4 cut(s) 4, 158, 413, 443
BmgT120I GGNCC 4 cut(s) 4, 158, 413, 443
BmiI GGNNCC 2 cut(s) 234, 533
BmrFI CCNGG 1 cut(s) 408
BmsI GCATC 1 cut(s) 397
BpmI CTGGAG 1 cut(s) 429
Bpu14I TTCGAA 1 cut(s) 359
BsaJI CCNNGG 2 cut(s) 222, 446
Bsc4I CCNNNNNNNGG 1 cut(s) 521
Bse1I ACTGG 1 cut(s) 320
Bse3DI GCAATG 1 cut(s) 190
BseBI CCWGG 1 cut(s) 408
BseDI CCNNGG 2 cut(s) 222, 446
BseLI CCNNNNNNNGG 1 cut(s) 521
BseMI GCAATG 1 cut(s) 190
BseNI ACTGG 1 cut(s) 320
BseSI GKGCMC 1 cut(s) 79
Bsh1236I CGCG 1 cut(s) 448
BshNI GGYRCC 2 cut(s) 232, 531
BsiHKAI GWGCWC 1 cut(s) 79
BslI CCNNNNNNNGG 1 cut(s) 521
Bsp119I TTCGAA 1 cut(s) 359
Bsp1286I GDGCHC 1 cut(s) 79
Bsp1407I TGTACA 1 cut(s) 491
Bsp143I GATC 1 cut(s) 459
Bsp19I CCATGG 1 cut(s) 222
BspACI CCGC 3 cut(s) 289, 446, 448
BspFNI CGCG 1 cut(s) 448
BspLI GGNNCC 2 cut(s) 234, 533
BspPI GGATC 1 cut(s) 454
BspT104I TTCGAA 1 cut(s) 359
BspT107I GGYRCC 2 cut(s) 232, 531
BsrBI CCGCTC 1 cut(s) 289
BsrDI GCAATG 1 cut(s) 190
BsrGI TGTACA 1 cut(s) 491
BsrI ACTGG 1 cut(s) 320
BssECI CCNNGG 2 cut(s) 222, 446
BssMI GATC 1 cut(s) 459
BssT1I CCWWGG 1 cut(s) 222
Bst2UI CCWGG 1 cut(s) 408
Bst4CI ACNGT 1 cut(s) 232
BstAUI TGTACA 1 cut(s) 491
BstBI TTCGAA 1 cut(s) 359
BstC8I GCNNGC 1 cut(s) 536
BstDEI CTNAG 1 cut(s) 276
BstDSI CCRYGG 2 cut(s) 222, 446
BstFNI CGCG 1 cut(s) 448
BstKTI GATC 1 cut(s) 462
BstMBI GATC 1 cut(s) 459
BstNI CCWGG 1 cut(s) 408
BstNSI RCATGY 1 cut(s) 492
BstSCI CCNGG 1 cut(s) 406
BstSLI GKGCMC 1 cut(s) 79
BstUI CGCG 1 cut(s) 448
BtgI CCRYGG 2 cut(s) 222, 446
BtsIMutI CAGTG 1 cut(s) 327
Cac8I GCNNGC 1 cut(s) 536
Cfr13I GGNCC 4 cut(s) 4, 158, 413, 443
Cfr42I CCGCGG 1 cut(s) 449
Csp6I GTAC 1 cut(s) 492
CviAII CATG 7 cut(s) 80, 107, 200, 223, 480, 489, 545
CviJI RGCY 6 cut(s) 167, 221, 242, 331, 406, 430
CviKI_1 RGCY 6 cut(s) 167, 221, 242, 331, 406, 430
CviQI GTAC 1 cut(s) 492
DdeI CTNAG 1 cut(s) 276
DpnI GATC 1 cut(s) 461
DpnII GATC 1 cut(s) 459
DraI TTTAAA 1 cut(s) 306
Eco130I CCWWGG 1 cut(s) 222
Eco47I GGWCC 4 cut(s) 4, 158, 413, 443
Eco57I CTGAAG 1 cut(s) 452
EcoO109I RGGNCCY 1 cut(s) 413
EcoRII CCWGG 1 cut(s) 406
EcoT14I CCWWGG 1 cut(s) 222
ErhI CCWWGG 1 cut(s) 222
FaeI CATG 7 cut(s) 83, 110, 203, 226, 483, 492, 548
FatI CATG 7 cut(s) 79, 106, 199, 222, 479, 488, 544
FauNDI CATATG 1 cut(s) 154
GsuI CTGGAG 1 cut(s) 429
Hin1II CATG 7 cut(s) 83, 110, 203, 226, 483, 492, 548
HinfI GANTC 2 cut(s) 16, 23
HphI GGTGA 1 cut(s) 296
Hpy166II GTNNAC 3 cut(s) 77, 122, 494
Hpy188I TCNGA 2 cut(s) 55, 505
Hpy188III TCNNGA 4 cut(s) 13, 20, 195, 271
Hpy8I GTNNAC 3 cut(s) 77, 122, 494
HpyAV CCTTC 3 cut(s) 44, 158, 427
HpyCH4III ACNGT 1 cut(s) 232
HpyCH4V TGCA 6 cut(s) 77, 106, 183, 296, 538, 544
HpyF3I CTNAG 1 cut(s) 276
Hsp92II CATG 7 cut(s) 83, 110, 203, 226, 483, 492, 548
KspI CCGCGG 1 cut(s) 449
Kzo9I GATC 1 cut(s) 459
LweI GCATC 1 cut(s) 397
MalI GATC 1 cut(s) 461
MbiI CCGCTC 1 cut(s) 289
MboI GATC 1 cut(s) 459
MfeI CAATTG 1 cut(s) 539
MhlI GDGCHC 1 cut(s) 79
MluCI AATT 5 cut(s) 39, 57, 258, 265, 539
MlyI GAGTC 1 cut(s) 25
MnlI CCTC 2 cut(s) 20, 404
MseI TTAA 2 cut(s) 261, 305
MslI CAYNNNNRTG 1 cut(s) 396
MspA1I CMGCKG 1 cut(s) 448
MspR9I CCNGG 1 cut(s) 408
MunI CAATTG 1 cut(s) 539
MvaI CCWGG 1 cut(s) 408
MvnI CGCG 1 cut(s) 448
NcoI CCATGG 1 cut(s) 222
NdeI CATATG 1 cut(s) 154
NdeII GATC 1 cut(s) 459
NlaIII CATG 7 cut(s) 83, 110, 203, 226, 483, 492, 548
NlaIV GGNNCC 2 cut(s) 234, 533
NspI RCATGY 1 cut(s) 492
NspV TTCGAA 1 cut(s) 359
PciI ACATGT 1 cut(s) 488
PfeI GAWTC 1 cut(s) 23
PleI GAGTC 1 cut(s) 24
PpsI GAGTC 1 cut(s) 24
PpuMI RGGWCCY 1 cut(s) 413
PscI ACATGT 1 cut(s) 488
Psp5II RGGWCCY 1 cut(s) 413
Psp6I CCWGG 1 cut(s) 406
PspGI CCWGG 1 cut(s) 406
PspN4I GGNNCC 2 cut(s) 234, 533
PspPI GGNCC 4 cut(s) 4, 158, 413, 443
PspPPI RGGWCCY 1 cut(s) 413
RsaI GTAC 1 cut(s) 493
RsaNI GTAC 1 cut(s) 492
RseI CAYNNNNRTG 1 cut(s) 396
SacII CCGCGG 1 cut(s) 449
SaqAI TTAA 2 cut(s) 261, 305
Sau3AI GATC 1 cut(s) 459
Sau96I GGNCC 4 cut(s) 4, 158, 413, 443
SchI GAGTC 1 cut(s) 25
ScrFI CCNGG 1 cut(s) 408
SduI GDGCHC 1 cut(s) 79
SetI ASST 6 cut(s) 12, 127, 150, 169, 415, 432
SfaNI GCATC 1 cut(s) 397
Sfr303I CCGCGG 1 cut(s) 449
SfuI TTCGAA 1 cut(s) 359
SgrBI CCGCGG 1 cut(s) 449
SinI GGWCC 4 cut(s) 4, 158, 413, 443
SmiMI CAYNNNNRTG 1 cut(s) 396
SmlI CTYRAG 1 cut(s) 11
SmoI CTYRAG 1 cut(s) 11
Sse9I AATT 5 cut(s) 39, 57, 258, 265, 539
SsiI CCGC 3 cut(s) 289, 446, 448
SspI AATATT 1 cut(s) 301
StyD4I CCNGG 1 cut(s) 406
StyI CCWWGG 1 cut(s) 222
TaaI ACNGT 1 cut(s) 232
TaqI TCGA 1 cut(s) 359
TasI AATT 5 cut(s) 39, 57, 258, 265, 539
TatI WGTACW 1 cut(s) 491
TfiI GAWTC 1 cut(s) 23
Tru1I TTAA 2 cut(s) 261, 305
Tru9I TTAA 2 cut(s) 261, 305
TscAI CASTG 1 cut(s) 327
TspDTI ATGAA 2 cut(s) 123, 369
TspRI CASTG 1 cut(s) 327
VneI GTGCAC 1 cut(s) 75
VpaK11BI GGWCC 4 cut(s) 4, 158, 413, 443
XceI RCATGY 1 cut(s) 492
XcmI CCANNNNNNNNNTGG 1 cut(s) 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.