Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0002667

Physical Location & Seq

Genomic Coordinates Forward (+)

3808394 .. 3810392

Gene Structure 1999 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG024200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGCAGGTTATTTCTGAAATCGTTGAAAGTTGCCGTGCACACGACTATACTGATGTTGTTGATTGCATGCCACCTTCCATATGGACCAACAGCTTATTTTCAACTATGCAATGTGATAGTGATATTTTCTTATCTACCAATCTGCTCTGTGCCAAGTGTGCACATGCGTTGCTTTGCTTTTTCTTTAACAATTTGAGAACCTACAGGCATCATATTTATGACAAGCCTGGAGGTCCTAAATCCATTGAGCTGAAGGAGCTTGGTCCGCGGTTTGAGTTGAAGCTTTTCAAGATAAAGTTAGGAACAGTGGATCAGAATGAAGCCCAGAATGAATGGGTCCTCAAACAGTACATGAACACAGCCAGCAAGAAACAGAATTTTATAGGGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Brix

Protein Analysis

130

Amino Acids

14.98

Weight (kDa)

6.88

Isoelectric Point (pI)

23.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002667)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63780
fragaria_vesca	FvH4_7g02470 FvH4_7g02470 FvH4_7g02470 FvH4_7g02470 FvH4_7g02470
malus_domestica	MD05G1030400.v1.1 MD10G1031800.v1.1
prunus_persica	Prupe.2G030400_v2.0.a1 Prupe.2G030400_v2.0.a1 Prupe.2G030400_v2.0.a1 Prupe.8G084800_v2.0.a1 Prupe.8G084800_v2.0.a1
pyrus_communis	pycom05g02160 pycom10g02010
rosa_chinensis	RchiOBHm_Chr1g0319831 RchiOBHm_Chr1g0320641 RchiOBHm_Chr1g0320961 RchiOBHm_Chr1g0321121
rosa_laevigata	RLG00000030450
rosa_multiflora	Rmu_sc0004627.1_g000009 Rmu_sc0004660.1_g000006 Rmu_sc0007977.1_g000009 Rmu_sc0008752.1_g000006
rosa_roxburghii	Rroxscaffold_160G00433730 Rroxscaffold_4G00328080
rosa_rugosa	Rorug01G0031000 Rorug01G0031100
rosa_samantha	Rh1AG043100 Rh1BG039800 Rh1CG043200 Rh1CG045200 Rh1DG022700 Rh1DG024200 Rh1DG025900 Rh1DG049600 Rh1DG049800
rosa_wichuraiana	Rw0G001080 Rw1G003660 Rw1G003780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	268
AciI	CCGC	2 cut(s)	266, 268
AclWI	GGATC	1 cut(s)	318
AcsI	RAATTY	1 cut(s)	376
AcuI	CTGAAG	1 cut(s)	272
AfaI	GTAC	1 cut(s)	350
AgsI	TTSAA	4 cut(s)	26, 102, 280, 289
AjnI	CCWGG	1 cut(s)	226
AluBI	AGCT	4 cut(s)	93, 250, 259, 283
AluI	AGCT	4 cut(s)	93, 250, 259, 283
Alw21I	GWGCWC	2 cut(s)	40, 163
Alw44I	GTGCAC	2 cut(s)	36, 159
AlwI	GGATC	1 cut(s)	318
ApaLI	GTGCAC	2 cut(s)	36, 159
ApoI	RAATTY	1 cut(s)	376
Asp700I	GAANNNNTTC	1 cut(s)	284
AspS9I	GGNCC	4 cut(s)	84, 233, 263, 337
AvaII	GGWCC	4 cut(s)	84, 233, 263, 337
BaeGI	GKGCMC	2 cut(s)	40, 163
Bbv12I	GWGCWC	2 cut(s)	40, 163
BceAI	ACGGC	1 cut(s)	18
BciT130I	CCWGG	1 cut(s)	228
BfmI	CTRYAG	1 cut(s)	202
Bme1390I	CCNGG	1 cut(s)	228
Bme18I	GGWCC	4 cut(s)	84, 233, 263, 337
BmgT120I	GGNCC	4 cut(s)	84, 233, 263, 337
BmiI	GGNNCC	1 cut(s)	338
BmrFI	CCNGG	1 cut(s)	228
BmsI	GCATC	1 cut(s)	217
BpmI	CTGGAG	1 cut(s)	249
BsaJI	CCNNGG	1 cut(s)	266
Bse3DI	GCAATG	1 cut(s)	116
BseBI	CCWGG	1 cut(s)	228
BseDI	CCNNGG	1 cut(s)	266
BseMI	GCAATG	1 cut(s)	116
BseSI	GKGCMC	2 cut(s)	40, 163
Bsh1236I	CGCG	1 cut(s)	268
BsiHKAI	GWGCWC	2 cut(s)	40, 163
Bsp1286I	GDGCHC	2 cut(s)	40, 163
Bsp143I	GATC	1 cut(s)	310
BspACI	CCGC	2 cut(s)	266, 268
BspFNI	CGCG	1 cut(s)	268
BspLI	GGNNCC	1 cut(s)	338
BspPI	GGATC	1 cut(s)	318
BsrDI	GCAATG	1 cut(s)	116
BssECI	CCNNGG	1 cut(s)	266
BssMI	GATC	1 cut(s)	310
Bst2UI	CCWGG	1 cut(s)	228
Bst4CI	ACNGT	2 cut(s)	307, 348
BstC8I	GCNNGC	2 cut(s)	68, 364
BstDSI	CCRYGG	1 cut(s)	266
BstFNI	CGCG	1 cut(s)	268
BstKTI	GATC	1 cut(s)	313
BstMBI	GATC	1 cut(s)	310
BstMWI	GCNNNNNNNGC	3 cut(s)	158, 256, 265
BstNI	CCWGG	1 cut(s)	228
BstNSI	RCATGY	2 cut(s)	70, 167
BstSCI	CCNGG	1 cut(s)	226
BstSFI	CTRYAG	1 cut(s)	202
BstSLI	GKGCMC	2 cut(s)	40, 163
BstUI	CGCG	1 cut(s)	268
BtgI	CCRYGG	1 cut(s)	266
BtsIMutI	CAGTG	1 cut(s)	312
Cac8I	GCNNGC	2 cut(s)	68, 364
Cfr13I	GGNCC	4 cut(s)	84, 233, 263, 337
Cfr42I	CCGCGG	1 cut(s)	269
Csp6I	GTAC	1 cut(s)	349
CviAII	CATG	3 cut(s)	67, 164, 352
CviJI	RGCY	7 cut(s)	93, 226, 250, 259, 283, 323, 362
CviKI_1	RGCY	7 cut(s)	93, 226, 250, 259, 283, 323, 362
CviQI	GTAC	1 cut(s)	349
DpnI	GATC	1 cut(s)	312
DpnII	GATC	1 cut(s)	310
Eco47I	GGWCC	4 cut(s)	84, 233, 263, 337
Eco57I	CTGAAG	1 cut(s)	272
EcoO109I	RGGNCCY	2 cut(s)	233, 337
EcoRII	CCWGG	1 cut(s)	226
FaeI	CATG	3 cut(s)	70, 167, 355
FatI	CATG	3 cut(s)	66, 163, 351
FauNDI	CATATG	1 cut(s)	80
GsuI	CTGGAG	1 cut(s)	249
Hin1II	CATG	3 cut(s)	70, 167, 355
HindIII	AAGCTT	1 cut(s)	281
Hpy166II	GTNNAC	2 cut(s)	38, 161
Hpy188I	TCNGA	2 cut(s)	16, 315
Hpy188III	TCNNGA	1 cut(s)	289
Hpy8I	GTNNAC	2 cut(s)	38, 161
HpyAV	CCTTC	2 cut(s)	84, 247
HpyCH4III	ACNGT	2 cut(s)	307, 348
HpyCH4V	TGCA	5 cut(s)	4, 38, 66, 109, 161
HpyF10VI	GCNNNNNNNGC	3 cut(s)	158, 256, 265
Hsp92II	CATG	3 cut(s)	70, 167, 355
KspI	CCGCGG	1 cut(s)	269
Kzo9I	GATC	1 cut(s)	310
LmnI	GCTCC	1 cut(s)	256
LpnPI	CCDG	5 cut(s)	190, 213, 240, 338, 376
LweI	GCATC	1 cut(s)	217
MalI	GATC	1 cut(s)	312
MboI	GATC	1 cut(s)	310
MhlI	GDGCHC	2 cut(s)	40, 163
MluCI	AATT	3 cut(s)	190, 376, 388
MnlI	CCTC	2 cut(s)	224, 350
MroXI	GAANNNNTTC	1 cut(s)	284
MseI	TTAA	1 cut(s)	186
MslI	CAYNNNNRTG	1 cut(s)	216
MspA1I	CMGCKG	1 cut(s)	268
MspR9I	CCNGG	1 cut(s)	228
MvaI	CCWGG	1 cut(s)	228
MvnI	CGCG	1 cut(s)	268
MwoI	GCNNNNNNNGC	3 cut(s)	158, 256, 265
NdeI	CATATG	1 cut(s)	80
NdeII	GATC	1 cut(s)	310
NlaIII	CATG	3 cut(s)	70, 167, 355
NlaIV	GGNNCC	1 cut(s)	338
NspI	RCATGY	2 cut(s)	70, 167
PaeI	GCATGC	1 cut(s)	70
PdmI	GAANNNNTTC	1 cut(s)	284
PpuMI	RGGWCCY	2 cut(s)	233, 337
Psp5II	RGGWCCY	2 cut(s)	233, 337
Psp6I	CCWGG	1 cut(s)	226
PspGI	CCWGG	1 cut(s)	226
PspN4I	GGNNCC	1 cut(s)	338
PspPI	GGNCC	4 cut(s)	84, 233, 263, 337
PspPPI	RGGWCCY	2 cut(s)	233, 337
RsaI	GTAC	1 cut(s)	350
RsaNI	GTAC	1 cut(s)	349
RseI	CAYNNNNRTG	1 cut(s)	216
SacII	CCGCGG	1 cut(s)	269
SaqAI	TTAA	1 cut(s)	186
Sau3AI	GATC	1 cut(s)	310
Sau96I	GGNCC	4 cut(s)	84, 233, 263, 337
ScrFI	CCNGG	1 cut(s)	228
SduI	GDGCHC	2 cut(s)	40, 163
SetI	ASST	8 cut(s)	9, 76, 95, 203, 235, 252, 261, 285
SfaNI	GCATC	1 cut(s)	217
SfcI	CTRYAG	1 cut(s)	202
Sfr303I	CCGCGG	1 cut(s)	269
SgrBI	CCGCGG	1 cut(s)	269
SinI	GGWCC	4 cut(s)	84, 233, 263, 337
SmiMI	CAYNNNNRTG	1 cut(s)	216
SphI	GCATGC	1 cut(s)	70
Sse9I	AATT	3 cut(s)	190, 376, 388
SsiI	CCGC	2 cut(s)	266, 268
StyD4I	CCNGG	1 cut(s)	226
TaaI	ACNGT	2 cut(s)	307, 348
TasI	AATT	3 cut(s)	190, 376, 388
TatI	WGTACW	1 cut(s)	348
Tru1I	TTAA	1 cut(s)	186
Tru9I	TTAA	1 cut(s)	186
TscAI	CASTG	1 cut(s)	312
TspDTI	ATGAA	3 cut(s)	333, 345, 368
TspRI	CASTG	1 cut(s)	312
VneI	GTGCAC	2 cut(s)	36, 159
VpaK11BI	GGWCC	4 cut(s)	84, 233, 263, 337
XapI	RAATTY	1 cut(s)	376
XceI	RCATGY	2 cut(s)	70, 167
XcmI	CCANNNNNNNNNTGG	1 cut(s)	78
XmnI	GAANNNNTTC	1 cut(s)	284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.