AT1G67260
TCP Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0005284
Physical Location & Seq
Reverse (-)
25167418 .. 25169707
2290 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G67260.3

Sequence Viewer

Length: 1080 bp
ATGTCGTCTTCCACCAATGACTACAACGATGGTAATAACAATGGAGTGTACCCTCTCTCTCTTTACCTTTCTTCACTCTCTGGCCATCAAGACATCATTCATAATCCCTACAACCATCAGTTAAAAGCATCTCCGGGCCATATGGTATCAGCAGTTCCTGAATCTCTGATCGATTACATGGCGTTTAAGTCAAATAATGTTGTGAATCAACAAGGCTTTGAGTTTCCTGAGGTGTCAAAGGAAATCAAGAAGGTGGTGAAGAAGGACCGACATAGCAAGATTCAAACGGCACAAGGGATTAGAGACAGGAGGGTTAGGCTTTCTATTGGGATTGCTCGCCAATTCTTTGATCTTCAGGATATGTTGGGGTTTGATAAAGCTAGTAAAACGTTAGACTGGCTGCTCAAGAAGTCAAGAAAAGCCATCAAAGAGGTCGTACAAGCAAAAAACCTCAACAATGATGATGAAGATTTTGGAAACATTGGAGGCGATGTAGAACAAGAAGAGGAGAAGGAGGAGGATGACAATGGCGATAAGAGCTTCGTGTATGGTTTGAGCCCCGGGTACGGTGAAGAAGAAGTGGTATGTGAGGCCACGAAGGCAGGGATAAGAAAGAAGAAGAGTGAGTTGAGAAACATCTCATCAAAGGGGCTAGGAGCCAAAGCTAGAGGAAAAGCAAAGGAGCGAACAAAAGAGATGATGGCCTATGATAATCCAGAGACTGCCTCTGATATTACACAATCTGAAATCATGGACCCATTCAAGAGGTCTATAGTCTTCAATGAAGGAGAAGATATGACACACCTTTTCTACAAGGAACCAATCGAGGAGTTTGATAATCAAGAATCTATCTTAACCAATATGACTCTACCAACGAAGATGGGTCAAAGTTACAATCAAAATAATGGGATACTTATGTTGGTAGATCAGAGTTCTAGCAGCAACTATAATACATTTCTGCCTCAAAATTTGGATTATAGTTATGATCAAAACCCTTTTCATGACCAAACCTTATATGTAGTCACCGACAAAAATTTCCCCAAAGGTAAAGTTTGGATTCAAGACTCTTTTGTAAACTAA

Protein Analysis

359

Amino Acids

40.75

Weight (kDa)

5.27

Isoelectric Point (pI)

48.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 87 - 234 3.6e-39 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 389
AcoI YGGCCR 1 cut(s) 82
AcsI RAATTY 2 cut(s) 967, 1033
AcuI CTGAAG 1 cut(s) 338
AfaI GTAC 3 cut(s) 50, 438, 566
AfiI CCNNNNNNNGG 1 cut(s) 566
AgsI TTSAA 4 cut(s) 284, 763, 781, 1061
AluBI AGCT 3 cut(s) 380, 540, 665
AluI AGCT 3 cut(s) 380, 540, 665
Alw26I GTCTC 2 cut(s) 297, 713
AlwNI CAGNNNCTG 2 cut(s) 158, 722
Ama87I CYCGRG 1 cut(s) 560
AoxI GGCC 4 cut(s) 82, 136, 591, 702
ApeKI GCWGC 2 cut(s) 400, 939
ApoI RAATTY 2 cut(s) 967, 1033
AspS9I GGNCC 3 cut(s) 136, 265, 754
AsuC2I CCSGG 3 cut(s) 135, 561, 562
AsuHPI GGTGA 3 cut(s) 268, 581, 1015
AvaI CYCGRG 1 cut(s) 560
AvaII GGWCC 2 cut(s) 265, 754
AxyI CCTNAGG 1 cut(s) 228
BaeI ACNNNNGTAYC 2 cut(s) 902, 935
BalI TGGCCA 1 cut(s) 84
BanII GRGCYC 1 cut(s) 560
BbsI GAAGAC 1 cut(s) 769
BbvI GCAGC 2 cut(s) 387, 951
BccI CCATC 6 cut(s) 23, 93, 123, 431, 694, 874
BceAI ACGGC 1 cut(s) 303
BciVI GTATCC 1 cut(s) 903
BclI TGATCA 1 cut(s) 985
BcnI CCSGG 3 cut(s) 135, 561, 562
BcoDI GTCTC 2 cut(s) 297, 713
BfaI CTAG 4 cut(s) 381, 653, 666, 936
BfmI CTRYAG 1 cut(s) 771
BfuI GTATCC 1 cut(s) 903
BglI GCCNNNNNGGC 1 cut(s) 599
BisI GCNGC 2 cut(s) 401, 940
BlsI GCNGC 2 cut(s) 402, 941
Bme1390I CCNGG 3 cut(s) 135, 561, 562
Bme18I GGWCC 2 cut(s) 265, 754
BmeT110I CYCGRG 1 cut(s) 560
BmgT120I GGNCC 3 cut(s) 136, 265, 754
BmiI GGNNCC 3 cut(s) 658, 756, 819
BmrFI CCNGG 3 cut(s) 135, 561, 562
BmsI GCATC 1 cut(s) 137
BpiI GAAGAC 1 cut(s) 769
BplI GAGNNNNNCTC 2 cut(s) 710, 742
BpuEI CTTGAG 1 cut(s) 389
BpuMI CCSGG 3 cut(s) 135, 561, 562
Bsa29I ATCGAT 1 cut(s) 171
BsaJI CCNNGG 2 cut(s) 559, 560
BsaXI ACNNNNNCTCC 2 cut(s) 477, 507
Bsc4I CCNNNNNNNGG 1 cut(s) 566
Bse1I ACTGG 1 cut(s) 401
Bse21I CCTNAGG 1 cut(s) 228
BseCI ATCGAT 1 cut(s) 171
BseDI CCNNGG 2 cut(s) 559, 560
BseGI GGATG 1 cut(s) 526
BseLI CCNNNNNNNGG 1 cut(s) 566
BseMII CTCAG 1 cut(s) 219
BseNI ACTGG 1 cut(s) 401
BseRI GAGGAG 3 cut(s) 521, 530, 842
BseXI GCAGC 2 cut(s) 387, 951
BshFI GGCC 4 cut(s) 84, 138, 593, 704
BshVI ATCGAT 1 cut(s) 171
BsiHKCI CYCGRG 1 cut(s) 560
BsiSI CCGG 2 cut(s) 134, 561
BslI CCNNNNNNNGG 1 cut(s) 566
BsmAI GTCTC 2 cut(s) 297, 713
BsnI GGCC 4 cut(s) 84, 138, 593, 704
BsoBI CYCGRG 1 cut(s) 560
Bsp1286I GDGCHC 1 cut(s) 560
Bsp143I GATC 4 cut(s) 168, 349, 925, 985
BspANI GGCC 4 cut(s) 84, 138, 593, 704
BspCNI CTCAG 1 cut(s) 220
BspDI ATCGAT 1 cut(s) 171
BspHI TCATGA 1 cut(s) 1000
BspLI GGNNCC 3 cut(s) 658, 756, 819
BsrI ACTGG 1 cut(s) 401
BssECI CCNNGG 2 cut(s) 559, 560
BssMI GATC 4 cut(s) 168, 349, 925, 985
Bst4CI ACNGT 1 cut(s) 569
Bst6I CTCTTC 2 cut(s) 498, 614
BstC8I GCNNGC 1 cut(s) 337
BstDEI CTNAG 1 cut(s) 228
BstF5I GGATG 1 cut(s) 526
BstKTI GATC 4 cut(s) 171, 352, 928, 988
BstMAI GTCTC 2 cut(s) 297, 713
BstMBI GATC 4 cut(s) 168, 349, 925, 985
BstMWI GCNNNNNNNGC 2 cut(s) 537, 599
BstSCI CCNGG 3 cut(s) 133, 559, 560
BstSFI CTRYAG 1 cut(s) 771
BstV1I GCAGC 2 cut(s) 387, 951
BstV2I GAAGAC 1 cut(s) 769
Bsu15I ATCGAT 1 cut(s) 171
Bsu36I CCTNAGG 1 cut(s) 228
BsuI GTATCC 1 cut(s) 903
BsuRI GGCC 4 cut(s) 84, 138, 593, 704
BsuTUI ATCGAT 1 cut(s) 171
BtgZI GCGATG 1 cut(s) 504
BtsCI GGATG 1 cut(s) 526
Cac8I GCNNGC 1 cut(s) 337
CaiI CAGNNNCTG 2 cut(s) 158, 722
CciI TCATGA 1 cut(s) 1000
Cfr13I GGNCC 3 cut(s) 136, 265, 754
Cfr9I CCCGGG 1 cut(s) 560
ClaI ATCGAT 1 cut(s) 171
Csp6I GTAC 3 cut(s) 49, 437, 565
CviAII CATG 3 cut(s) 178, 751, 1001
CviQI GTAC 3 cut(s) 49, 437, 565
DdeI CTNAG 1 cut(s) 228
DpnI GATC 4 cut(s) 170, 351, 927, 987
DpnII GATC 4 cut(s) 168, 349, 925, 985
EaeI YGGCCR 1 cut(s) 82
Eam1104I CTCTTC 2 cut(s) 498, 614
EarI CTCTTC 2 cut(s) 498, 614
Eco24I GRGCYC 1 cut(s) 560
Eco47I GGWCC 2 cut(s) 265, 754
Eco57I CTGAAG 1 cut(s) 338
Eco81I CCTNAGG 1 cut(s) 228
Eco88I CYCGRG 1 cut(s) 560
EcoT38I GRGCYC 1 cut(s) 560
FaeI CATG 3 cut(s) 181, 754, 1004
FatI CATG 3 cut(s) 177, 750, 1000
FauNDI CATATG 1 cut(s) 141
FbaI TGATCA 1 cut(s) 985
Fnu4HI GCNGC 2 cut(s) 401, 940
FokI GGATG 1 cut(s) 533
FriOI GRGCYC 1 cut(s) 560
Fsp4HI GCNGC 2 cut(s) 401, 940
FspBI CTAG 4 cut(s) 381, 653, 666, 936
GluI GCNGC 2 cut(s) 401, 940
HaeIII GGCC 4 cut(s) 84, 138, 593, 704
HapII CCGG 2 cut(s) 134, 561
Hin1II CATG 3 cut(s) 181, 754, 1004
HinfI GANTC 7 cut(s) 161, 205, 280, 845, 865, 1057, 1064
HpaII CCGG 2 cut(s) 134, 561
HphI GGTGA 3 cut(s) 268, 581, 1015
Hpy166II GTNNAC 2 cut(s) 49, 1075
Hpy188I TCNGA 4 cut(s) 168, 730, 745, 930
Hpy8I GTNNAC 2 cut(s) 49, 1075
HpyAV CCTTC 5 cut(s) 244, 256, 505, 592, 779
HpyCH4III ACNGT 1 cut(s) 569
HpyCH4IV ACGT 1 cut(s) 389
HpyF10VI GCNNNNNNNGC 2 cut(s) 537, 599
HpyF3I CTNAG 1 cut(s) 228
HpySE526I ACGT 1 cut(s) 389
Hsp92II CATG 3 cut(s) 181, 754, 1004
Ksp22I TGATCA 1 cut(s) 985
Kzo9I GATC 4 cut(s) 168, 349, 925, 985
LmnI GCTCC 2 cut(s) 656, 682
Lsp1109I GCAGC 2 cut(s) 387, 951
LweI GCATC 1 cut(s) 137
MaeI CTAG 4 cut(s) 381, 653, 666, 936
MaeII ACGT 1 cut(s) 389
MaeIII GTNAC 2 cut(s) 890, 1021
MalI GATC 4 cut(s) 170, 351, 927, 987
MboI GATC 4 cut(s) 168, 349, 925, 985
MhlI GDGCHC 1 cut(s) 560
MlsI TGGCCA 1 cut(s) 84
MluCI AATT 3 cut(s) 341, 967, 1033
MluNI TGGCCA 1 cut(s) 84
MlyI GAGTC 2 cut(s) 859, 1058
Mox20I TGGCCA 1 cut(s) 84
MscI TGGCCA 1 cut(s) 84
MseI TTAA 3 cut(s) 122, 186, 854
Msp20I TGGCCA 1 cut(s) 84
MspI CCGG 2 cut(s) 134, 561
MspR9I CCNGG 3 cut(s) 135, 561, 562
MwoI GCNNNNNNNGC 2 cut(s) 537, 599
NciI CCSGG 3 cut(s) 135, 561, 562
NdeI CATATG 1 cut(s) 141
NdeII GATC 4 cut(s) 168, 349, 925, 985
NlaIII CATG 3 cut(s) 181, 754, 1004
NlaIV GGNNCC 3 cut(s) 658, 756, 819
NmuCI GTSAC 1 cut(s) 1021
PagI TCATGA 1 cut(s) 1000
PfeI GAWTC 5 cut(s) 161, 205, 280, 845, 1057
PkrI GCNGC 2 cut(s) 402, 941
PleI GAGTC 2 cut(s) 859, 1058
PpsI GAGTC 2 cut(s) 859, 1058
Psp1406I AACGTT 1 cut(s) 389
PspN4I GGNNCC 3 cut(s) 658, 756, 819
PspPI GGNCC 3 cut(s) 136, 265, 754
PsrI GAACNNNNNNTAC 2 cut(s) 138, 170
PstNI CAGNNNCTG 2 cut(s) 158, 722
RsaI GTAC 3 cut(s) 50, 438, 566
RsaNI GTAC 3 cut(s) 49, 437, 565
SaqAI TTAA 3 cut(s) 122, 186, 854
SatI GCNGC 2 cut(s) 401, 940
Sau3AI GATC 4 cut(s) 168, 349, 925, 985
Sau96I GGNCC 3 cut(s) 136, 265, 754
SchI GAGTC 2 cut(s) 859, 1058
ScrFI CCNGG 3 cut(s) 135, 561, 562
SduI GDGCHC 1 cut(s) 560
SfaNI GCATC 1 cut(s) 137
SfcI CTRYAG 1 cut(s) 771
SinI GGWCC 2 cut(s) 265, 754
SmaI CCCGGG 1 cut(s) 562
SmlI CTYRAG 1 cut(s) 404
SmoI CTYRAG 1 cut(s) 404
Sse9I AATT 3 cut(s) 341, 967, 1033
SspMI CTAG 4 cut(s) 381, 653, 666, 936
StyD4I CCNGG 3 cut(s) 133, 559, 560
TaaI ACNGT 1 cut(s) 569
TaiI ACGT 1 cut(s) 392
TaqI TCGA 2 cut(s) 171, 825
TaqII GACCGA 1 cut(s) 282
TasI AATT 3 cut(s) 341, 967, 1033
TfiI GAWTC 5 cut(s) 161, 205, 280, 845, 1057
Tru1I TTAA 3 cut(s) 122, 186, 854
Tru9I TTAA 3 cut(s) 122, 186, 854
TseFI GTSAC 1 cut(s) 1021
TseI GCWGC 2 cut(s) 400, 939
Tsp45I GTSAC 1 cut(s) 1021
TspDTI ATGAA 4 cut(s) 89, 480, 798, 989
TspMI CCCGGG 1 cut(s) 560
VpaK11BI GGWCC 2 cut(s) 265, 754
XapI RAATTY 2 cut(s) 967, 1033
XmaI CCCGGG 1 cut(s) 560
XspI CTAG 4 cut(s) 381, 653, 666, 936
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.