pycom09g00970
TCP Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0005284
Physical Location & Seq
Reverse (-)
716099 .. 717277
1179 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g00970.1

Sequence Viewer

Length: 1179 bp
ATGTTTTCATCTTCCAGTTATAACGGTAATACTGTAAGTCCTTTTCAACATAACTTTCCCTTTTCTTCTTCTTCTTCTTCAAATTACCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTGTGCAAACCTAGAAACCTGCACTGGAGACACTTTCCTTCATCACATTCCTGATCCCCTCTCTGGTCAATTTTCACAGCAAAATATTGCTTTATTGGCGCCTCCTTCTCATCAAACCCTAACCCATTTGGGAGTTTCATCAAACACCGTGCCTGGTAGTATAAACTCCACCATATCATCATCTTGTGGAGATCATCATCAGTACTACCATAGTAACTATGGTAGCATTAGTAATGATAATACTATTCCTTATTTTCTTCACTCTTCTAGGGAAGATGTAGTAGTAGCACCGGCCGCGACGAAGAAAGACCGGCACAGCAAGATCTTCACCGCTCAGGGTTTGAGGGACCGTAGGGTGAGGCTGTCCCTCAACGTTGCCCGTCAGTTCTTTGACCTCCAAGACCTGCTAGGGCTTGACAGGGCAAGTAAAACCATCGAGTGGCTACTAAAAAGGTCCAGAAAGGCCATCAGGGATCTCGGAACACAGAAGAAGAACTTGAGCTGCAGTTCTGAGCGGTCCAAGAGTTTGTCTTCCACTTCCGAGTGCGACGAGGTTGTTTCGGACATAAATGAGGTGGAAAACCATGTATTGAGCAAAGAAAAAGAGATGGTGATGATGAAGAAGTTGAAAGAATCTAAATCTGCCGGAGCTTATGTTGCGAAAGAGTTGAGGGCAAAGGCAAGAGCAAAGGCAAGGGAAAGGACAAGAGAGAAAAAGATGTGCACTACTAGTAGGAGGCCTCATCAGATGTTGAACCAATTGAACTTAATGATTGAGCAGCTTGATGATCACGAAACAAACATCTCATCCTCGTCGAAGGTTAATTTTGGAGATCATCGTGTGAATCAAGAACTGGGATCCCTCTTGGCCAATCAAGCTCATCACCATCATCGTCACGAGGAGGATCAATCTGCTTTGATCAAAAGAAACAAAATGAAGTCATTTTCATCAGTAGTTTCCGATTATAATACTACTGATCAGAGTTCCAGCAATAGCCACCTCCAATTTCCCAATGCATCTCAAAATTGGGACATCAATGGCGCTTTCCCCATGCCCTAG

Protein Analysis

393

Amino Acids

43.84

Weight (kDa)

9.01

Isoelectric Point (pI)

59.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 140 - 280 9.4e-41 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 21, 1086
Acc36I ACCTGC 2 cut(s) 146, 531
AccB1I GGYRCC 1 cut(s) 217
AccB7I CCANNNNNTGG 1 cut(s) 558
AccBSI CCGCTC 2 cut(s) 452, 634
AccII CGCG 1 cut(s) 416
AciI CCGC 3 cut(s) 414, 450, 634
AclI AACGTT 1 cut(s) 492
AclWI GGATC 5 cut(s) 167, 600, 972, 985, 1032
AcoI YGGCCR 2 cut(s) 411, 987
AcyI GRCGYC 1 cut(s) 218
AfaI GTAC 1 cut(s) 323
AfiI CCNNNNNNNGG 2 cut(s) 182, 558
AgsI TTSAA 5 cut(s) 47, 81, 748, 874, 883
AhlI ACTAGT 1 cut(s) 848
AjnI CCWGG 1 cut(s) 271
AluBI AGCT 4 cut(s) 621, 770, 901, 998
AluI AGCT 4 cut(s) 621, 770, 901, 998
Alw21I GWGCWC 1 cut(s) 845
Alw26I GTCTC 1 cut(s) 141
Alw44I GTGCAC 1 cut(s) 841
AlwI GGATC 5 cut(s) 167, 600, 972, 985, 1032
AoxI GGCC 4 cut(s) 411, 582, 857, 987
ApaLI GTGCAC 1 cut(s) 841
ApeKI GCWGC 2 cut(s) 621, 898
AspLEI GCGC 2 cut(s) 220, 1163
AspS9I GGNCC 3 cut(s) 466, 573, 636
AsuHPI GGTGA 4 cut(s) 439, 487, 742, 995
AvaII GGWCC 3 cut(s) 466, 573, 636
BaeGI GKGCMC 1 cut(s) 845
BalI TGGCCA 1 cut(s) 989
BamHI GGATCC 1 cut(s) 977
BanI GGYRCC 1 cut(s) 217
BauI CACGAG 1 cut(s) 1016
BbsI GAAGAC 1 cut(s) 642
Bbv12I GWGCWC 1 cut(s) 845
BbvI GCAGC 2 cut(s) 608, 910
BccI CCATC 4 cut(s) 560, 593, 721, 1014
BciT130I CCWGG 1 cut(s) 273
BclI TGATCA 3 cut(s) 907, 1038, 1096
BcoDI GTCTC 1 cut(s) 141
BcuI ACTAGT 1 cut(s) 848
BfaI CTAG 5 cut(s) 131, 387, 527, 849, 1177
BfmI CTRYAG 1 cut(s) 622
BfoI RGCGCY 2 cut(s) 221, 1164
BfuAI ACCTGC 2 cut(s) 146, 531
BglII AGATCT 1 cut(s) 441
BisI GCNGC 3 cut(s) 414, 622, 899
BlsI GCNGC 3 cut(s) 415, 623, 900
BmcAI AGTACT 1 cut(s) 323
Bme1390I CCNGG 1 cut(s) 273
Bme18I GGWCC 3 cut(s) 466, 573, 636
BmgT120I GGNCC 3 cut(s) 466, 573, 636
BmiI GGNNCC 3 cut(s) 219, 467, 979
BmrFI CCNGG 1 cut(s) 273
BmrI ACTGGG 1 cut(s) 983
BmsI GCATC 1 cut(s) 1145
BmuI ACTGGG 1 cut(s) 983
BpiI GAAGAC 1 cut(s) 642
BpmI CTGGAG 1 cut(s) 165
Bpu10I CCTNAGC 1 cut(s) 453
BpuEI CTTGAG 1 cut(s) 637
BsaBI GATNNNNATC 1 cut(s) 315
BsaHI GRCGYC 1 cut(s) 218
BsaXI ACNNNNNCTCC 2 cut(s) 759, 789
Bsc4I CCNNNNNNNGG 2 cut(s) 182, 558
Bse118I RCCGGY 2 cut(s) 409, 429
Bse1I ACTGG 3 cut(s) 15, 148, 978
Bse8I GATNNNNATC 1 cut(s) 315
BseBI CCWGG 1 cut(s) 273
BseGI GGATG 1 cut(s) 926
BseJI GATNNNNATC 1 cut(s) 315
BseLI CCNNNNNNNGG 2 cut(s) 182, 558
BseMII CTCAG 2 cut(s) 467, 621
BseNI ACTGG 3 cut(s) 15, 148, 978
BseSI GKGCMC 1 cut(s) 845
BseX3I CGGCCG 1 cut(s) 411
BseXI GCAGC 2 cut(s) 608, 910
BsgI GTGCAG 1 cut(s) 124
Bsh1236I CGCG 1 cut(s) 416
Bsh1285I CGRYCG 1 cut(s) 414
BshFI GGCC 4 cut(s) 413, 584, 859, 989
BshNI GGYRCC 1 cut(s) 217
BsiEI CGRYCG 1 cut(s) 414
BsiHKAI GWGCWC 1 cut(s) 845
BsiSI CCGG 3 cut(s) 410, 430, 765
BslFI GGGAC 3 cut(s) 469, 479, 1163
BslI CCNNNNNNNGG 2 cut(s) 182, 558
BsmAI GTCTC 1 cut(s) 141
BsmFI GGGAC 3 cut(s) 469, 479, 1163
BsnI GGCC 4 cut(s) 413, 584, 859, 989
Bsp1286I GDGCHC 1 cut(s) 845
BspACI CCGC 3 cut(s) 414, 450, 634
BspANI GGCC 4 cut(s) 413, 584, 859, 989
BspCNI CTCAG 2 cut(s) 466, 622
BspFNI CGCG 1 cut(s) 416
BspLI GGNNCC 3 cut(s) 219, 467, 979
BspMAI CTGCAG 1 cut(s) 626
BspMI ACCTGC 2 cut(s) 146, 531
BspPI GGATC 5 cut(s) 167, 600, 972, 985, 1032
BspT107I GGYRCC 1 cut(s) 217
BsrBI CCGCTC 2 cut(s) 452, 634
BsrFI RCCGGY 2 cut(s) 409, 429
BsrI ACTGG 3 cut(s) 15, 148, 978
BssAI RCCGGY 2 cut(s) 409, 429
BssNI GRCGYC 1 cut(s) 218
BssSI CACGAG 1 cut(s) 1016
Bst2BI CACGAG 1 cut(s) 1016
Bst2UI CCWGG 1 cut(s) 273
Bst4CI ACNGT 4 cut(s) 26, 34, 268, 470
Bst6I CTCTTC 1 cut(s) 388
BstACI GRCGYC 1 cut(s) 218
BstDEI CTNAG 2 cut(s) 453, 630
BstF5I GGATG 1 cut(s) 926
BstFNI CGCG 1 cut(s) 416
BstH2I RGCGCY 2 cut(s) 221, 1164
BstHHI GCGC 2 cut(s) 220, 1163
BstMAI GTCTC 1 cut(s) 141
BstMCI CGRYCG 1 cut(s) 414
BstMWI GCNNNNNNNGC 4 cut(s) 215, 413, 776, 995
BstNI CCWGG 1 cut(s) 273
BstSCI CCNGG 1 cut(s) 271
BstSFI CTRYAG 1 cut(s) 622
BstSLI GKGCMC 1 cut(s) 845
BstUI CGCG 1 cut(s) 416
BstV1I GCAGC 2 cut(s) 608, 910
BstV2I GAAGAC 1 cut(s) 642
BstX2I RGATCY 3 cut(s) 441, 592, 977
BstYI RGATCY 3 cut(s) 441, 592, 977
BstZI CGGCCG 1 cut(s) 411
BsuRI GGCC 4 cut(s) 413, 584, 859, 989
BtsCI GGATG 1 cut(s) 926
BtsIMutI CAGTG 1 cut(s) 141
BveI ACCTGC 2 cut(s) 146, 531
CfoI GCGC 2 cut(s) 220, 1163
Cfr10I RCCGGY 2 cut(s) 409, 429
Cfr13I GGNCC 3 cut(s) 466, 573, 636
Csp6I GTAC 1 cut(s) 322
CviAII CATG 2 cut(s) 704, 1171
CviQI GTAC 1 cut(s) 322
DdeI CTNAG 2 cut(s) 453, 630
DinI GGCGCC 1 cut(s) 219
EaeI YGGCCR 2 cut(s) 411, 987
EagI CGGCCG 1 cut(s) 411
Eam1104I CTCTTC 1 cut(s) 388
EarI CTCTTC 1 cut(s) 388
EclXI CGGCCG 1 cut(s) 411
Eco147I AGGCCT 1 cut(s) 859
Eco47I GGWCC 3 cut(s) 466, 573, 636
Eco52I CGGCCG 1 cut(s) 411
EcoRII CCWGG 1 cut(s) 271
EcoT22I ATGCAT 1 cut(s) 1138
EgeI GGCGCC 1 cut(s) 219
EheI GGCGCC 1 cut(s) 219
FaeI CATG 2 cut(s) 707, 1174
FalI AAGNNNNNCTT 2 cut(s) 599, 631
FaqI GGGAC 3 cut(s) 469, 479, 1163
FatI CATG 2 cut(s) 703, 1170
FbaI TGATCA 3 cut(s) 907, 1038, 1096
Fnu4HI GCNGC 3 cut(s) 414, 622, 899
FokI GGATG 1 cut(s) 913
Fsp4HI GCNGC 3 cut(s) 414, 622, 899
FspBI CTAG 5 cut(s) 131, 387, 527, 849, 1177
GlaI GCGC 2 cut(s) 219, 1162
GluI GCNGC 3 cut(s) 414, 622, 899
GsuI CTGGAG 1 cut(s) 165
HaeII RGCGCY 2 cut(s) 221, 1164
HaeIII GGCC 4 cut(s) 413, 584, 859, 989
HapII CCGG 3 cut(s) 410, 430, 765
HhaI GCGC 2 cut(s) 220, 1163
Hin1I GRCGYC 1 cut(s) 218
Hin1II CATG 2 cut(s) 707, 1174
Hin6I GCGC 2 cut(s) 218, 1161
HinP1I GCGC 2 cut(s) 218, 1161
HinfI GANTC 2 cut(s) 752, 964
HpaII CCGG 3 cut(s) 410, 430, 765
HphI GGTGA 4 cut(s) 439, 487, 742, 995
Hpy166II GTNNAC 1 cut(s) 843
Hpy188I TCNGA 7 cut(s) 599, 631, 661, 682, 867, 1081, 1101
Hpy188III TCNNGA 5 cut(s) 170, 576, 911, 968, 1016
Hpy8I GTNNAC 1 cut(s) 843
Hpy99I CGWCG 3 cut(s) 421, 671, 937
HpyAV CCTTC 3 cut(s) 167, 234, 931
HpyCH4III ACNGT 4 cut(s) 26, 34, 268, 470
HpyCH4IV ACGT 1 cut(s) 492
HpyCH4V TGCA 5 cut(s) 125, 141, 624, 843, 1136
HpyF10VI GCNNNNNNNGC 4 cut(s) 215, 413, 776, 995
HpyF3I CTNAG 2 cut(s) 453, 630
HpySE526I ACGT 1 cut(s) 492
Hsp92I GRCGYC 1 cut(s) 218
Hsp92II CATG 2 cut(s) 707, 1174
HspAI GCGC 2 cut(s) 218, 1161
KasI GGCGCC 1 cut(s) 217
Ksp22I TGATCA 3 cut(s) 907, 1038, 1096
LmnI GCTCC 1 cut(s) 767
Lsp1109I GCAGC 2 cut(s) 608, 910
LweI GCATC 1 cut(s) 1145
MaeI CTAG 5 cut(s) 131, 387, 527, 849, 1177
MaeII ACGT 1 cut(s) 492
MaeIII GTNAC 2 cut(s) 332, 1013
MbiI CCGCTC 2 cut(s) 452, 634
MfeI CAATTG 1 cut(s) 878
MflI RGATCY 3 cut(s) 441, 592, 977
MhlI GDGCHC 1 cut(s) 845
MlsI TGGCCA 1 cut(s) 989
MluCI AATT 6 cut(s) 82, 188, 878, 943, 1124, 1144
MluNI TGGCCA 1 cut(s) 989
Mly113I GGCGCC 1 cut(s) 218
Mox20I TGGCCA 1 cut(s) 989
Mph1103I ATGCAT 1 cut(s) 1138
MscI TGGCCA 1 cut(s) 989
MseI TTAA 2 cut(s) 887, 942
Msp20I TGGCCA 1 cut(s) 989
MspI CCGG 3 cut(s) 410, 430, 765
MspR9I CCNGG 1 cut(s) 273
MunI CAATTG 1 cut(s) 878
MvaI CCWGG 1 cut(s) 273
MvnI CGCG 1 cut(s) 416
MwoI GCNNNNNNNGC 4 cut(s) 215, 413, 776, 995
NarI GGCGCC 1 cut(s) 218
NlaIII CATG 2 cut(s) 707, 1174
NlaIV GGNNCC 3 cut(s) 219, 467, 979
NmuCI GTSAC 1 cut(s) 1013
NsiI ATGCAT 1 cut(s) 1138
PceI AGGCCT 1 cut(s) 859
PfeI GAWTC 2 cut(s) 752, 964
PflMI CCANNNNNTGG 1 cut(s) 558
PkrI GCNGC 3 cut(s) 415, 623, 900
PluTI GGCGCC 1 cut(s) 221
PsiI TTATAA 2 cut(s) 21, 1086
Psp1406I AACGTT 1 cut(s) 492
Psp6I CCWGG 1 cut(s) 271
PspGI CCWGG 1 cut(s) 271
PspN4I GGNNCC 3 cut(s) 219, 467, 979
PspPI GGNCC 3 cut(s) 466, 573, 636
PstI CTGCAG 1 cut(s) 626
PsuI RGATCY 3 cut(s) 441, 592, 977
RsaI GTAC 1 cut(s) 323
RsaNI GTAC 1 cut(s) 322
SaqAI TTAA 2 cut(s) 887, 942
SatI GCNGC 3 cut(s) 414, 622, 899
Sau96I GGNCC 3 cut(s) 466, 573, 636
ScaI AGTACT 1 cut(s) 323
ScrFI CCNGG 1 cut(s) 273
SduI GDGCHC 1 cut(s) 845
SfaNI GCATC 1 cut(s) 1145
SfcI CTRYAG 1 cut(s) 622
SfoI GGCGCC 1 cut(s) 219
SinI GGWCC 3 cut(s) 466, 573, 636
SmlI CTYRAG 1 cut(s) 616
SmoI CTYRAG 1 cut(s) 616
SpeI ACTAGT 1 cut(s) 848
Sse9I AATT 6 cut(s) 82, 188, 878, 943, 1124, 1144
SseBI AGGCCT 1 cut(s) 859
SsiI CCGC 3 cut(s) 414, 450, 634
SspDI GGCGCC 1 cut(s) 217
SspI AATATT 1 cut(s) 205
SspMI CTAG 5 cut(s) 131, 387, 527, 849, 1177
StuI AGGCCT 1 cut(s) 859
StyD4I CCNGG 1 cut(s) 271
TaaI ACNGT 4 cut(s) 26, 34, 268, 470
TaiI ACGT 1 cut(s) 495
TaqI TCGA 2 cut(s) 555, 935
TasI AATT 6 cut(s) 82, 188, 878, 943, 1124, 1144
TatI WGTACW 1 cut(s) 321
TauI GCSGC 1 cut(s) 416
TfiI GAWTC 2 cut(s) 752, 964
Tru1I TTAA 2 cut(s) 887, 942
Tru9I TTAA 2 cut(s) 887, 942
TscAI CASTG 1 cut(s) 148
TseFI GTSAC 1 cut(s) 1013
TseI GCWGC 2 cut(s) 621, 898
Tsp45I GTSAC 1 cut(s) 1013
TspDTI ATGAA 5 cut(s) 149, 246, 752, 1056, 1070
TspRI CASTG 1 cut(s) 148
Van91I CCANNNNNTGG 1 cut(s) 558
VneI GTGCAC 1 cut(s) 841
VpaK11BI GGWCC 3 cut(s) 466, 573, 636
XcmI CCANNNNNNNNNTGG 1 cut(s) 335
XspI CTAG 5 cut(s) 131, 387, 527, 849, 1177
ZrmI AGTACT 1 cut(s) 323
Zsp2I ATGCAT 1 cut(s) 1138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.