pycom17g07450
TCP Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0005284
Physical Location & Seq
Reverse (-)
5378806 .. 5379942
1137 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g07450.1

Sequence Viewer

Length: 1137 bp
ATGTTTTCATCTTCCAGTTGTAATAGCAATACTGTAAGTCCCCAACCTAACTTTCCCTTTTCTTCTACAAATTACCATCCTCATCCTCCTCCTCCTCTTCCTCCTCCTCCACCTCCTCCTTGTGTTAACCTAGTAACCTGCACTGGAGACATTTTGTTTCACCACATTCATGATTCCCTCTCTGGTCAATTTTCACACCAAAATATTTCTTTAATGGCACCCTCTGCTCATCAAACCCTAACCCATTTGGGAGTTTCATCAAACACTGTTCCTCCTAGTATAAATGCCCCCGTATCATCATCTTGTGGAGATCTTCATCATCATCAGTACAGTAACTATGATCTTCATTCCTCTAGGCAAGATGTAGTAGTAGCACCGGCGAAGAAAGACCAGCACAGCAAGATCTTCACCGCTCAGGGCTTGAGGGACCGGAGGGTAAGGCTGTCCATCGACGTTTCCCGTCAGTTCTTTGACCTCCAAGACCGGCTAGGGTTTGACACGGCAAGTAAAACCCTAGAGTGGCTACTAAACAAGTCCAGAAAGGCCATCAGGGATCTCAGAACACGGAAGAATAACTTGAGCTGCAGTTCTGAGCGGTCCAAGAGTTTGTCTTCCACTTCCGAGTGCAAGGACGTTGTTTCGGACATAAACGAGGTGGATAATCATGTAGTCAGCAAAGAAAAAGAGATGGTGATGATGAAGTTGAAAGAATCTGAATCTGCCGGGGCTTATGTTGCGAAGGAATCGCGGGCAAAGGCAAAAGCAAGGGCAAGGGAAAGGGCAAGAGCGAAAAAGGTGTGCATTACTAGTAGGAGGCCTCAGCAGATCTTGAACCAAATGAACCTATTCAATGAGCAGCTTAATGATCATGAAACAAACATCTCATCCTCATCGAAGGTTAATTTTGGAGATCATCATGTGAATCAAGAACTGGGATCCCTCTTGGATAATCAAGCCCATCATCATCATTGTCAGGAGGAGGATCAATCTGCTTTGATCAAAAGAAACAAAATGAAGTTATTTTCATCGGTAGTTTCAAATTATAATACTACCGATCAGAGTTCCAGCAACAGCTACCTCCAATTTACCAATTCATCTCAATATTGGGACATCAATGGCGCGTTCCCCATGCCCTAG

Protein Analysis

379

Amino Acids

42.38

Weight (kDa)

8.83

Isoelectric Point (pI)

60.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 127 - 265 1.5e-39 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1044
Acc36I ACCTGC 1 cut(s) 146
AccB1I GGYRCC 1 cut(s) 217
AccBSI CCGCTC 2 cut(s) 413, 595
AccII CGCG 2 cut(s) 748, 1121
AciI CCGC 3 cut(s) 411, 595, 748
AclWI GGATC 4 cut(s) 561, 930, 943, 990
AfaI GTAC 1 cut(s) 329
AfiI CCNNNNNNNGG 1 cut(s) 519
AgsI TTSAA 4 cut(s) 706, 832, 850, 1038
AhlI ACTAGT 1 cut(s) 806
AjuI GAANNNNNNNTTGG 2 cut(s) 36, 68
AluBI AGCT 3 cut(s) 582, 859, 1074
AluI AGCT 3 cut(s) 582, 859, 1074
Alw26I GTCTC 1 cut(s) 141
AlwI GGATC 4 cut(s) 561, 930, 943, 990
AoxI GGCC 2 cut(s) 543, 815
ApeKI GCWGC 2 cut(s) 582, 856
Asp700I GAANNNNTTC 1 cut(s) 845
AspLEI GCGC 1 cut(s) 1121
AspS9I GGNCC 2 cut(s) 427, 597
AsuC2I CCSGG 1 cut(s) 724
AsuHPI GGTGA 3 cut(s) 152, 400, 703
AvaII GGWCC 2 cut(s) 427, 597
BamHI GGATCC 1 cut(s) 935
BanI GGYRCC 1 cut(s) 217
BbsI GAAGAC 1 cut(s) 603
BbvCI CCTCAGC 1 cut(s) 819
BbvI GCAGC 2 cut(s) 569, 868
BccI CCATC 5 cut(s) 84, 455, 554, 682, 966
BceAI ACGGC 1 cut(s) 516
BclI TGATCA 2 cut(s) 865, 996
BcnI CCSGG 1 cut(s) 724
BcoDI GTCTC 1 cut(s) 141
BcuI ACTAGT 1 cut(s) 806
BfaI CTAG 7 cut(s) 131, 276, 354, 488, 515, 807, 1135
BfmI CTRYAG 1 cut(s) 583
BfuAI ACCTGC 1 cut(s) 146
BglII AGATCT 3 cut(s) 310, 402, 825
BisI GCNGC 2 cut(s) 583, 857
BlsI GCNGC 2 cut(s) 584, 858
Bme1390I CCNGG 1 cut(s) 724
Bme18I GGWCC 2 cut(s) 427, 597
BmgT120I GGNCC 2 cut(s) 427, 597
BmiI GGNNCC 3 cut(s) 219, 428, 937
BmrFI CCNGG 1 cut(s) 724
BmrI ACTGGG 1 cut(s) 941
BmuI ACTGGG 1 cut(s) 941
BpiI GAAGAC 1 cut(s) 603
BpmI CTGGAG 1 cut(s) 165
Bpu10I CCTNAGC 2 cut(s) 414, 819
BpuEI CTTGAG 2 cut(s) 442, 598
BpuMI CCSGG 1 cut(s) 724
BsaBI GATNNNNATC 1 cut(s) 315
BsaJI CCNNGG 1 cut(s) 723
BsaWI WCCGGW 1 cut(s) 429
BsaXI ACNNNNNCTCC 2 cut(s) 256, 286
Bsc4I CCNNNNNNNGG 1 cut(s) 519
Bse118I RCCGGY 2 cut(s) 376, 483
Bse1I ACTGG 3 cut(s) 15, 148, 936
Bse8I GATNNNNATC 1 cut(s) 315
BseDI CCNNGG 1 cut(s) 723
BseGI GGATG 3 cut(s) 76, 82, 884
BseJI GATNNNNATC 1 cut(s) 315
BseLI CCNNNNNNNGG 1 cut(s) 519
BseMII CTCAG 4 cut(s) 428, 571, 582, 833
BseNI ACTGG 3 cut(s) 15, 148, 936
BseRI GAGGAG 7 cut(s) 78, 81, 84, 93, 96, 105, 992
BseXI GCAGC 2 cut(s) 569, 868
BsgI GTGCAG 1 cut(s) 124
Bsh1236I CGCG 2 cut(s) 748, 1121
BshFI GGCC 2 cut(s) 545, 817
BshNI GGYRCC 1 cut(s) 217
BsiSI CCGG 4 cut(s) 377, 430, 484, 723
BslFI GGGAC 3 cut(s) 24, 440, 1121
BslI CCNNNNNNNGG 1 cut(s) 519
BsmAI GTCTC 1 cut(s) 141
BsmFI GGGAC 3 cut(s) 24, 440, 1121
BsnI GGCC 2 cut(s) 545, 817
BspACI CCGC 3 cut(s) 411, 595, 748
BspANI GGCC 2 cut(s) 545, 817
BspCNI CTCAG 4 cut(s) 427, 570, 583, 832
BspFNI CGCG 2 cut(s) 748, 1121
BspHI TCATGA 2 cut(s) 169, 868
BspLI GGNNCC 3 cut(s) 219, 428, 937
BspMAI CTGCAG 1 cut(s) 587
BspMI ACCTGC 1 cut(s) 146
BspPI GGATC 4 cut(s) 561, 930, 943, 990
BspT107I GGYRCC 1 cut(s) 217
BsrBI CCGCTC 2 cut(s) 413, 595
BsrFI RCCGGY 2 cut(s) 376, 483
BsrI ACTGG 3 cut(s) 15, 148, 936
BssAI RCCGGY 2 cut(s) 376, 483
BssECI CCNNGG 1 cut(s) 723
Bst4CI ACNGT 3 cut(s) 34, 268, 332
Bst6I CTCTTC 1 cut(s) 102
BstAPI GCANNNNNTGC 1 cut(s) 224
BstC8I GCNNGC 1 cut(s) 750
BstDEI CTNAG 4 cut(s) 414, 557, 591, 819
BstF5I GGATG 3 cut(s) 76, 82, 884
BstFNI CGCG 2 cut(s) 748, 1121
BstHHI GCGC 1 cut(s) 1121
BstMAI GTCTC 1 cut(s) 141
BstMWI GCNNNNNNNGC 2 cut(s) 224, 734
BstSCI CCNGG 1 cut(s) 722
BstSFI CTRYAG 1 cut(s) 583
BstUI CGCG 2 cut(s) 748, 1121
BstV1I GCAGC 2 cut(s) 569, 868
BstV2I GAAGAC 1 cut(s) 603
BstX2I RGATCY 5 cut(s) 310, 402, 553, 825, 935
BstYI RGATCY 5 cut(s) 310, 402, 553, 825, 935
BsuRI GGCC 2 cut(s) 545, 817
BtsCI GGATG 3 cut(s) 76, 82, 884
BtsIMutI CAGTG 2 cut(s) 141, 264
BveI ACCTGC 1 cut(s) 146
Cac8I GCNNGC 1 cut(s) 750
CciI TCATGA 2 cut(s) 169, 868
CfoI GCGC 1 cut(s) 1121
Cfr10I RCCGGY 2 cut(s) 376, 483
Cfr13I GGNCC 2 cut(s) 427, 597
Csp6I GTAC 1 cut(s) 328
CviAII CATG 5 cut(s) 170, 665, 869, 917, 1129
CviQI GTAC 1 cut(s) 328
DdeI CTNAG 4 cut(s) 414, 557, 591, 819
Eam1104I CTCTTC 1 cut(s) 102
EarI CTCTTC 1 cut(s) 102
Eco147I AGGCCT 1 cut(s) 817
Eco47I GGWCC 2 cut(s) 427, 597
FaeI CATG 5 cut(s) 173, 668, 872, 920, 1132
FalI AAGNNNNNCTT 2 cut(s) 560, 592
FaqI GGGAC 3 cut(s) 24, 440, 1121
FatI CATG 5 cut(s) 169, 664, 868, 916, 1128
FauI CCCGC 1 cut(s) 741
FbaI TGATCA 2 cut(s) 865, 996
Fnu4HI GCNGC 2 cut(s) 583, 857
FokI GGATG 3 cut(s) 63, 69, 871
Fsp4HI GCNGC 2 cut(s) 583, 857
FspBI CTAG 7 cut(s) 131, 276, 354, 488, 515, 807, 1135
GlaI GCGC 1 cut(s) 1120
GluI GCNGC 2 cut(s) 583, 857
GsuI CTGGAG 1 cut(s) 165
HaeIII GGCC 2 cut(s) 545, 817
HapII CCGG 4 cut(s) 377, 430, 484, 723
HhaI GCGC 1 cut(s) 1121
Hin1II CATG 5 cut(s) 173, 668, 872, 920, 1132
Hin6I GCGC 1 cut(s) 1119
HinP1I GCGC 1 cut(s) 1119
HincII GTYRAC 1 cut(s) 127
HindII GTYRAC 1 cut(s) 127
HinfI GANTC 5 cut(s) 173, 710, 716, 743, 922
HpaI GTTAAC 1 cut(s) 127
HpaII CCGG 4 cut(s) 377, 430, 484, 723
HphI GGTGA 3 cut(s) 152, 400, 703
Hpy166II GTNNAC 1 cut(s) 127
Hpy188I TCNGA 6 cut(s) 560, 592, 622, 643, 715, 1059
Hpy188III TCNNGA 6 cut(s) 170, 537, 829, 869, 926, 974
Hpy8I GTNNAC 1 cut(s) 127
Hpy99I CGWCG 1 cut(s) 455
HpyAV CCTTC 2 cut(s) 733, 889
HpyCH4III ACNGT 3 cut(s) 34, 268, 332
HpyCH4IV ACGT 2 cut(s) 453, 633
HpyCH4V TGCA 4 cut(s) 141, 585, 627, 801
HpyF10VI GCNNNNNNNGC 2 cut(s) 224, 734
HpyF3I CTNAG 4 cut(s) 414, 557, 591, 819
HpySE526I ACGT 2 cut(s) 453, 633
Hsp92II CATG 5 cut(s) 173, 668, 872, 920, 1132
HspAI GCGC 1 cut(s) 1119
Ksp22I TGATCA 2 cut(s) 865, 996
KspAI GTTAAC 1 cut(s) 127
Lsp1109I GCAGC 2 cut(s) 569, 868
MaeI CTAG 7 cut(s) 131, 276, 354, 488, 515, 807, 1135
MaeII ACGT 2 cut(s) 453, 633
MaeIII GTNAC 2 cut(s) 133, 332
MbiI CCGCTC 2 cut(s) 413, 595
MboII GAAGA 9 cut(s) 3, 54, 89, 305, 335, 394, 397, 580, 603
MflI RGATCY 5 cut(s) 310, 402, 553, 825, 935
MluCI AATT 6 cut(s) 70, 188, 901, 1039, 1082, 1090
MroXI GAANNNNTTC 1 cut(s) 845
MseI TTAA 4 cut(s) 126, 212, 861, 900
MslI CAYNNNNRTG 1 cut(s) 168
MspI CCGG 4 cut(s) 377, 430, 484, 723
MspR9I CCNGG 1 cut(s) 724
MvnI CGCG 2 cut(s) 748, 1121
MwoI GCNNNNNNNGC 2 cut(s) 224, 734
NciI CCSGG 1 cut(s) 724
NlaIII CATG 5 cut(s) 173, 668, 872, 920, 1132
NlaIV GGNNCC 3 cut(s) 219, 428, 937
PagI TCATGA 2 cut(s) 169, 868
PceI AGGCCT 1 cut(s) 817
PdmI GAANNNNTTC 1 cut(s) 845
PfeI GAWTC 5 cut(s) 173, 710, 716, 743, 922
PkrI GCNGC 2 cut(s) 584, 858
PsiI TTATAA 1 cut(s) 1044
PspN4I GGNNCC 3 cut(s) 219, 428, 937
PspPI GGNCC 2 cut(s) 427, 597
PstI CTGCAG 1 cut(s) 587
PsuI RGATCY 5 cut(s) 310, 402, 553, 825, 935
RsaI GTAC 1 cut(s) 329
RsaNI GTAC 1 cut(s) 328
RseI CAYNNNNRTG 1 cut(s) 168
SaqAI TTAA 4 cut(s) 126, 212, 861, 900
SatI GCNGC 2 cut(s) 583, 857
Sau96I GGNCC 2 cut(s) 427, 597
ScrFI CCNGG 1 cut(s) 724
SfcI CTRYAG 1 cut(s) 583
SgrAI CRCCGGYG 1 cut(s) 376
SinI GGWCC 2 cut(s) 427, 597
SmiMI CAYNNNNRTG 1 cut(s) 168
SmlI CTYRAG 2 cut(s) 421, 577
SmoI CTYRAG 2 cut(s) 421, 577
SpeI ACTAGT 1 cut(s) 806
Sse9I AATT 6 cut(s) 70, 188, 901, 1039, 1082, 1090
SseBI AGGCCT 1 cut(s) 817
SsiI CCGC 3 cut(s) 411, 595, 748
SspI AATATT 2 cut(s) 205, 1103
SspMI CTAG 7 cut(s) 131, 276, 354, 488, 515, 807, 1135
StuI AGGCCT 1 cut(s) 817
StyD4I CCNGG 1 cut(s) 722
TaaI ACNGT 3 cut(s) 34, 268, 332
TaiI ACGT 2 cut(s) 456, 636
TaqI TCGA 2 cut(s) 450, 893
TasI AATT 6 cut(s) 70, 188, 901, 1039, 1082, 1090
TatI WGTACW 1 cut(s) 327
TfiI GAWTC 5 cut(s) 173, 710, 716, 743, 922
Tru1I TTAA 4 cut(s) 126, 212, 861, 900
Tru9I TTAA 4 cut(s) 126, 212, 861, 900
TscAI CASTG 2 cut(s) 148, 271
TseI GCWGC 2 cut(s) 582, 856
TspGWI ACGGA 1 cut(s) 580
TspRI CASTG 2 cut(s) 148, 271
VpaK11BI GGWCC 2 cut(s) 427, 597
XmnI GAANNNNTTC 1 cut(s) 845
XspI CTAG 7 cut(s) 131, 276, 354, 488, 515, 807, 1135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.