RchiOBHm_Chr2g0163221

Protein of unknown function (DUF2854)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0005284
Physical Location & Seq
Forward (+)
78819280 .. 78820799
1520 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ53141

Sequence Viewer

Length: 1083 bp
ATGTACTCTTCCACCAATAATAACATTAGTAGTAGTGGTACTGTATTTCCTTTCCCACCTTATAACTTTCCCTTTTCCTCCTCTCCTTCTTCTCATAACAGCCACCGCCCTCTTCTTCCTCAAGAAAATACAACCCGTGGAGGCATTTTTGGCCCACACCATGATCAATTTTCCCTATTTAACAATTGTTTGCTGTCACCCGGACCGGAAAGTACTATGGTCAATCTCGGAGGAGCTTCATCAAACGCGATCGTACGATCATCTGGAGACTACCAGCAGCATTATGGTTATGGTAATAATATTACTCATCCCTATTTTGTTTCTAAGGTGAGAGTACCGGTGGTTGCTGTGAAGAAAGACCGGCACAGCAAGATCTTCACTTCTCAGGGCTTGAGGGATCGGAGGGTAAGACTCTCCATCAATGTTGCCCGTGAGTTCTTCGATCTCCAAGACTTGCTAGGGTTTGACAAAGCCAGCAAAACCTTAGAGTGGCTGCTCAGCAATTCCAGAAATGCCATCAAAGACCTAGAAAAGAGCAAGTGCAATAACAGTACTAGTATATCATCTTCTAGTACGTCGGACTGTGATGATGTTTTGGACATAAACAACGAGGCGTCCGATGACAAGAGGAGGAAGATGAAGGAGGCTGCTGCTATAATGGCCAGAGCATCGCGGGCAAAGGCTAGAGCAAGAGCAAGAGAAAGAACAAGAGAGAAGATGTGCGGTACTAGTACGAGGAGCCATCAGATCTGTAGCCAGTTGAGCTTGTTCAATGAGCTTGAACCTGCAGATATGAATAAAGAACCGGGTAGTACCCTCCTATCTAATTGTCAAGCTGAATATCATGAATCTGTTGCGCTCAAAAGAAAGCTGAAGGCGCCGTCAGTTTCCAATTATCACGATCGAAGCCTTCAATTGAACCCCAAAAGCACGGAACCTAGTTCAAATTGCGGCAGCCACATTAATATCCAATTTCCGAATGCAATATCTCAAAATTATTGGGACATCAGCGGCAGTGTCTTCACATGCCCTAGCATTTGTGCCATTACCACCAACATGAATCTTAATTCTACGGGGTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2854 UMP1

Protein Analysis

360

Amino Acids

39.86

Weight (kDa)

9.17

Isoelectric Point (pI)

53.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 117 - 241 7.8e-37 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 63
Acc36I ACCTGC 1 cut(s) 793
AccB1I GGYRCC 1 cut(s) 877
AccII CGCG 2 cut(s) 248, 673
AciI CCGC 5 cut(s) 106, 673, 723, 951, 1011
AclWI GGATC 1 cut(s) 405
AcoI YGGCCR 1 cut(s) 660
AcuI CTGAAG 1 cut(s) 893
AcyI GRCGYC 2 cut(s) 614, 878
AfiI CCNNNNNNNGG 1 cut(s) 489
AgeI ACCGGT 1 cut(s) 337
AgsI TTSAA 5 cut(s) 772, 782, 914, 919, 945
AhlI ACTAGT 2 cut(s) 554, 728
AluBI AGCT 5 cut(s) 236, 765, 778, 836, 871
AluI AGCT 5 cut(s) 236, 765, 778, 836, 871
Alw26I GTCTC 1 cut(s) 261
AlwI GGATC 1 cut(s) 405
AoxI GGCC 2 cut(s) 151, 660
ApeKI GCWGC 5 cut(s) 277, 493, 647, 650, 954
AseI ATTAAT 1 cut(s) 963
AsiGI ACCGGT 1 cut(s) 337
AspLEI GCGC 2 cut(s) 859, 880
AspS9I GGNCC 2 cut(s) 152, 203
AsuC2I CCSGG 2 cut(s) 201, 807
AsuHPI GGTGA 2 cut(s) 189, 340
AvaII GGWCC 1 cut(s) 203
BalI TGGCCA 1 cut(s) 662
BanI GGYRCC 1 cut(s) 877
BarI GAAGNNNNNNTAC 2 cut(s) 550, 582
BbsI GAAGAC 1 cut(s) 1012
BbvI GCAGC 5 cut(s) 289, 480, 634, 637, 966
BccI CCATC 3 cut(s) 425, 524, 750
BceAI ACGGC 1 cut(s) 865
BclI TGATCA 1 cut(s) 163
BcnI CCSGG 2 cut(s) 201, 807
BcoDI GTCTC 1 cut(s) 261
BcuI ACTAGT 2 cut(s) 554, 728
BfaI CTAG 8 cut(s) 458, 527, 555, 570, 684, 729, 939, 1032
BfmI CTRYAG 2 cut(s) 751, 786
BfoI RGCGCY 1 cut(s) 881
BfuAI ACCTGC 1 cut(s) 793
BglII AGATCT 2 cut(s) 372, 747
BisI GCNGC 7 cut(s) 278, 494, 648, 651, 952, 955, 1012
BlpI GCTNAGC 1 cut(s) 497
BlsI GCNGC 7 cut(s) 279, 495, 649, 652, 953, 956, 1013
BmcAI AGTACT 2 cut(s) 214, 553
Bme1390I CCNGG 2 cut(s) 201, 807
Bme18I GGWCC 1 cut(s) 203
BmgT120I GGNCC 2 cut(s) 152, 203
BmiI GGNNCC 3 cut(s) 740, 879, 936
BmrFI CCNGG 2 cut(s) 201, 807
BmsI GCATC 1 cut(s) 677
BpiI GAAGAC 1 cut(s) 1012
BpmI CTGGAG 1 cut(s) 285
Bpu1102I GCTNAGC 1 cut(s) 497
BpuEI CTTGAG 2 cut(s) 105, 412
BpuMI CCSGG 2 cut(s) 201, 807
BsaHI GRCGYC 2 cut(s) 614, 878
BsaJI CCNNGG 1 cut(s) 136
BsaWI WCCGGW 2 cut(s) 205, 337
Bsc4I CCNNNNNNNGG 1 cut(s) 489
Bse118I RCCGGY 2 cut(s) 337, 360
Bse1I ACTGG 1 cut(s) 757
BseDI CCNNGG 1 cut(s) 136
BseGI GGATG 1 cut(s) 307
BseLI CCNNNNNNNGG 1 cut(s) 489
BseMII CTCAG 2 cut(s) 398, 511
BseNI ACTGG 1 cut(s) 757
BseRI GAGGAG 4 cut(s) 70, 246, 643, 751
BseXI GCAGC 5 cut(s) 289, 480, 634, 637, 966
Bsh1236I CGCG 2 cut(s) 248, 673
Bsh1285I CGRYCG 2 cut(s) 252, 904
BshFI GGCC 2 cut(s) 153, 662
BshNI GGYRCC 1 cut(s) 877
BshTI ACCGGT 1 cut(s) 337
BsiEI CGRYCG 2 cut(s) 252, 904
BsiSI CCGG 5 cut(s) 201, 206, 338, 361, 806
BsiWI CGTACG 1 cut(s) 253
BslFI GGGAC 1 cut(s) 1016
BslI CCNNNNNNNGG 1 cut(s) 489
BsmAI GTCTC 1 cut(s) 261
BsmFI GGGAC 1 cut(s) 1016
BsmI GAATGC 1 cut(s) 985
BsnI GGCC 2 cut(s) 153, 662
Bsp143I GATC 8 cut(s) 163, 249, 257, 372, 397, 442, 747, 901
Bsp1720I GCTNAGC 1 cut(s) 497
BspACI CCGC 5 cut(s) 106, 673, 723, 951, 1011
BspANI GGCC 2 cut(s) 153, 662
BspCNI CTCAG 2 cut(s) 397, 510
BspFNI CGCG 2 cut(s) 248, 673
BspHI TCATGA 1 cut(s) 844
BspLI GGNNCC 3 cut(s) 740, 879, 936
BspMAI CTGCAG 1 cut(s) 790
BspMI ACCTGC 1 cut(s) 793
BspPI GGATC 1 cut(s) 405
BspT107I GGYRCC 1 cut(s) 877
BsrFI RCCGGY 2 cut(s) 337, 360
BsrI ACTGG 1 cut(s) 757
BssAI RCCGGY 2 cut(s) 337, 360
BssECI CCNNGG 1 cut(s) 136
BssMI GATC 8 cut(s) 163, 249, 257, 372, 397, 442, 747, 901
BssNI GRCGYC 2 cut(s) 614, 878
Bst4CI ACNGT 3 cut(s) 43, 551, 584
Bst6I CTCTTC 2 cut(s) 13, 117
BstACI GRCGYC 2 cut(s) 614, 878
BstC8I GCNNGC 2 cut(s) 475, 675
BstDEI CTNAG 4 cut(s) 324, 384, 484, 497
BstDSI CCRYGG 1 cut(s) 136
BstF5I GGATG 1 cut(s) 307
BstFNI CGCG 2 cut(s) 248, 673
BstH2I RGCGCY 1 cut(s) 881
BstHHI GCGC 2 cut(s) 859, 880
BstKTI GATC 8 cut(s) 166, 252, 260, 375, 400, 445, 750, 904
BstMAI GTCTC 1 cut(s) 261
BstMBI GATC 8 cut(s) 163, 249, 257, 372, 397, 442, 747, 901
BstMCI CGRYCG 2 cut(s) 252, 904
BstMWI GCNNNNNNNGC 5 cut(s) 150, 659, 674, 762, 877
BstNSI RCATGY 1 cut(s) 1029
BstSCI CCNGG 2 cut(s) 199, 805
BstSFI CTRYAG 2 cut(s) 751, 786
BstUI CGCG 2 cut(s) 248, 673
BstV1I GCAGC 5 cut(s) 289, 480, 634, 637, 966
BstV2I GAAGAC 1 cut(s) 1012
BstX2I RGATCY 2 cut(s) 372, 747
BstYI RGATCY 2 cut(s) 372, 747
BsuRI GGCC 2 cut(s) 153, 662
BtgI CCRYGG 1 cut(s) 136
BtgZI GCGATG 1 cut(s) 654
BtsCI GGATG 1 cut(s) 307
BtsI GCAGTG 1 cut(s) 1021
BtsIMutI CAGTG 1 cut(s) 1021
BveI ACCTGC 1 cut(s) 793
Cac8I GCNNGC 2 cut(s) 475, 675
CciI TCATGA 1 cut(s) 844
CfoI GCGC 2 cut(s) 859, 880
Cfr10I RCCGGY 2 cut(s) 337, 360
Cfr13I GGNCC 2 cut(s) 152, 203
CpoI CGGWCCG 1 cut(s) 203
CseI GACGC 1 cut(s) 603
CspAI ACCGGT 1 cut(s) 337
CspI CGGWCCG 1 cut(s) 203
CviAII CATG 4 cut(s) 161, 845, 1026, 1057
DdeI CTNAG 4 cut(s) 324, 384, 484, 497
DinI GGCGCC 1 cut(s) 879
DpnI GATC 8 cut(s) 165, 251, 259, 374, 399, 444, 749, 903
DpnII GATC 8 cut(s) 163, 249, 257, 372, 397, 442, 747, 901
EaeI YGGCCR 1 cut(s) 660
Eam1104I CTCTTC 2 cut(s) 13, 117
EarI CTCTTC 2 cut(s) 13, 117
Eco47I GGWCC 1 cut(s) 203
Eco57I CTGAAG 1 cut(s) 893
EgeI GGCGCC 1 cut(s) 879
EheI GGCGCC 1 cut(s) 879
FaeI CATG 4 cut(s) 164, 848, 1029, 1060
FaqI GGGAC 1 cut(s) 1016
FatI CATG 4 cut(s) 160, 844, 1025, 1056
FauI CCCGC 1 cut(s) 666
FbaI TGATCA 1 cut(s) 163
Fnu4HI GCNGC 7 cut(s) 278, 494, 648, 651, 952, 955, 1012
FokI GGATG 1 cut(s) 294
Fsp4HI GCNGC 7 cut(s) 278, 494, 648, 651, 952, 955, 1012
FspBI CTAG 8 cut(s) 458, 527, 555, 570, 684, 729, 939, 1032
GlaI GCGC 2 cut(s) 858, 879
GluI GCNGC 7 cut(s) 278, 494, 648, 651, 952, 955, 1012
GsuI CTGGAG 1 cut(s) 285
HaeII RGCGCY 1 cut(s) 881
HaeIII GGCC 2 cut(s) 153, 662
HapII CCGG 5 cut(s) 201, 206, 338, 361, 806
HgaI GACGC 1 cut(s) 603
HhaI GCGC 2 cut(s) 859, 880
Hin1I GRCGYC 2 cut(s) 614, 878
Hin1II CATG 4 cut(s) 164, 848, 1029, 1060
Hin6I GCGC 2 cut(s) 857, 878
HinP1I GCGC 2 cut(s) 857, 878
HinfI GANTC 3 cut(s) 411, 848, 1060
HpaII CCGG 5 cut(s) 201, 206, 338, 361, 806
HphI GGTGA 2 cut(s) 189, 340
Hpy188I TCNGA 6 cut(s) 230, 402, 580, 619, 747, 978
Hpy188III TCNNGA 5 cut(s) 122, 264, 507, 845, 899
Hpy99I CGWCG 1 cut(s) 580
HpyAV CCTTC 4 cut(s) 96, 634, 868, 920
HpyCH4III ACNGT 3 cut(s) 43, 551, 584
HpyCH4IV ACGT 1 cut(s) 575
HpyCH4V TGCA 3 cut(s) 543, 788, 983
HpyF10VI GCNNNNNNNGC 5 cut(s) 150, 659, 674, 762, 877
HpyF3I CTNAG 4 cut(s) 324, 384, 484, 497
HpySE526I ACGT 1 cut(s) 575
Hsp92I GRCGYC 2 cut(s) 614, 878
Hsp92II CATG 4 cut(s) 164, 848, 1029, 1060
HspAI GCGC 2 cut(s) 857, 878
KasI GGCGCC 1 cut(s) 877
Ksp22I TGATCA 1 cut(s) 163
Kzo9I GATC 8 cut(s) 163, 249, 257, 372, 397, 442, 747, 901
LmnI GCTCC 2 cut(s) 233, 738
Lsp1109I GCAGC 5 cut(s) 289, 480, 634, 637, 966
LweI GCATC 1 cut(s) 677
MaeI CTAG 8 cut(s) 458, 527, 555, 570, 684, 729, 939, 1032
MaeII ACGT 1 cut(s) 575
MaeIII GTNAC 1 cut(s) 195
MalI GATC 8 cut(s) 165, 251, 259, 374, 399, 444, 749, 903
MboI GATC 8 cut(s) 163, 249, 257, 372, 397, 442, 747, 901
MfeI CAATTG 2 cut(s) 184, 914
MflI RGATCY 2 cut(s) 372, 747
MlsI TGGCCA 1 cut(s) 662
MluNI TGGCCA 1 cut(s) 662
Mly113I GGCGCC 1 cut(s) 878
MlyI GAGTC 1 cut(s) 405
MmeI TCCRAC 1 cut(s) 558
Mox20I TGGCCA 1 cut(s) 662
MscI TGGCCA 1 cut(s) 662
MseI TTAA 4 cut(s) 180, 963, 1065, 1081
MslI CAYNNNNRTG 1 cut(s) 1055
Msp20I TGGCCA 1 cut(s) 662
MspA1I CMGCKG 1 cut(s) 1011
MspI CCGG 5 cut(s) 201, 206, 338, 361, 806
MspR9I CCNGG 2 cut(s) 201, 807
MunI CAATTG 2 cut(s) 184, 914
Mva1269I GAATGC 1 cut(s) 985
MvnI CGCG 2 cut(s) 248, 673
MwoI GCNNNNNNNGC 5 cut(s) 150, 659, 674, 762, 877
NarI GGCGCC 1 cut(s) 878
NciI CCSGG 2 cut(s) 201, 807
NdeII GATC 8 cut(s) 163, 249, 257, 372, 397, 442, 747, 901
NlaIII CATG 4 cut(s) 164, 848, 1029, 1060
NlaIV GGNNCC 3 cut(s) 740, 879, 936
NmuCI GTSAC 1 cut(s) 195
NspI RCATGY 1 cut(s) 1029
PagI TCATGA 1 cut(s) 844
PcsI WCGNNNNNNNCGW 1 cut(s) 615
PctI GAATGC 1 cut(s) 985
PfeI GAWTC 2 cut(s) 848, 1060
Pfl23II CGTACG 1 cut(s) 253
PinAI ACCGGT 1 cut(s) 337
PkrI GCNGC 7 cut(s) 279, 495, 649, 652, 953, 956, 1013
Ple19I CGATCG 2 cut(s) 252, 904
PleI GAGTC 1 cut(s) 405
PluTI GGCGCC 1 cut(s) 881
PpsI GAGTC 1 cut(s) 405
PshBI ATTAAT 1 cut(s) 963
PsiI TTATAA 1 cut(s) 63
PspLI CGTACG 1 cut(s) 253
PspN4I GGNNCC 3 cut(s) 740, 879, 936
PspPI GGNCC 2 cut(s) 152, 203
PstI CTGCAG 1 cut(s) 790
PsuI RGATCY 2 cut(s) 372, 747
PvuI CGATCG 2 cut(s) 252, 904
RseI CAYNNNNRTG 1 cut(s) 1055
Rsr2I CGGWCCG 1 cut(s) 203
RsrII CGGWCCG 1 cut(s) 203
SaqAI TTAA 4 cut(s) 180, 963, 1065, 1081
SatI GCNGC 7 cut(s) 278, 494, 648, 651, 952, 955, 1012
Sau3AI GATC 8 cut(s) 163, 249, 257, 372, 397, 442, 747, 901
Sau96I GGNCC 2 cut(s) 152, 203
ScaI AGTACT 2 cut(s) 214, 553
SchI GAGTC 1 cut(s) 405
ScrFI CCNGG 2 cut(s) 201, 807
SfaNI GCATC 1 cut(s) 677
SfcI CTRYAG 2 cut(s) 751, 786
SfoI GGCGCC 1 cut(s) 879
SinI GGWCC 1 cut(s) 203
SmiMI CAYNNNNRTG 1 cut(s) 1055
SmlI CTYRAG 2 cut(s) 120, 391
SmoI CTYRAG 2 cut(s) 120, 391
SpeI ACTAGT 2 cut(s) 554, 728
SsiI CCGC 5 cut(s) 106, 673, 723, 951, 1011
SspDI GGCGCC 1 cut(s) 877
SspI AATATT 1 cut(s) 301
SspMI CTAG 8 cut(s) 458, 527, 555, 570, 684, 729, 939, 1032
StyD4I CCNGG 2 cut(s) 199, 805
TaaI ACNGT 3 cut(s) 43, 551, 584
TaiI ACGT 1 cut(s) 578
TaqI TCGA 2 cut(s) 441, 904
TatI WGTACW 3 cut(s) 3, 212, 551
TauI GCSGC 2 cut(s) 954, 1014
TfiI GAWTC 2 cut(s) 848, 1060
Tru1I TTAA 4 cut(s) 180, 963, 1065, 1081
Tru9I TTAA 4 cut(s) 180, 963, 1065, 1081
TscAI CASTG 1 cut(s) 1021
TseFI GTSAC 1 cut(s) 195
TseI GCWGC 5 cut(s) 277, 493, 647, 650, 954
Tsp45I GTSAC 1 cut(s) 195
TspDTI ATGAA 5 cut(s) 228, 653, 809, 861, 1073
TspGWI ACGGA 1 cut(s) 947
TspRI CASTG 1 cut(s) 1021
VpaK11BI GGWCC 1 cut(s) 203
VspI ATTAAT 1 cut(s) 963
XceI RCATGY 1 cut(s) 1029
XcmI CCANNNNNNNNNTGG 1 cut(s) 281
XspI CTAG 8 cut(s) 458, 527, 555, 570, 684, 729, 939, 1032
ZrmI AGTACT 2 cut(s) 214, 553
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.