FvH4_6g45410

Protein of unknown function (DUF2854)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0005284
Physical Location & Seq
Forward (+)
34870822 .. 34875541
4720 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g45410.t1

Sequence Viewer

Length: 1026 bp
ATGCACTCTTCCAGCAATAATAACATTAGCTGTAGCGGCATTCTCTATCCTTTCCCACCTTATAGCTTTCCCTTTTCCTCTTCTTCTCATAACAACCACCACCCTCTTCTTCCTCAAGAAAATACAACACCTGGAGGCATTTTTGGCCTTCACCAAGATCAGTTTTCCCTAGTAAACAATAGTTTTCTTCCCCCCGGACCGGAAAGTACTATGCTCAATCTCGGAGGAGATTCATCAAACGCGATCGTACCATCACCTGGTGACTACCGGCAGCATTATGGTTATGATATTAATAATATTTCTCATCCCTATTTTGTTTCCAAGGATGTGCAAGTACCGGTGGTTGCTGTGAAGAAAGACCGGCACAGCAAGATCTTCACGGCCCAGGGATTTAGGGATCGGAGGGTAAGACTCTCCATCAATGTTGCCCGTGAGTTCTTCGATCTCCAAGACTTGCTAGGGTTTGACAAAGCCAGCACAACCCTAGAGTGGTTGCTCCGCAAGTCCAAAAACGCCATCAAAGACCTAGAAAAGAGCAAGTGCAAAAACAGTTTCTCGTCTTCTAGTACTTCGGAGTGTGATGTTGTTTTGGAAGACAACTTAGACAAGAGGATGAGGAAGATGAAGGAGAGGGCAAAGGCTAGAGCAAGAGCAAGAGAGAGAACAAGAGAGAAGATGTGCGGGATTAGTAAGAGGAGCCCTCAGATCTGTAGCCATTTGAGATTATTCAATGATCTTGAACCTGCAGATATGAATCAAGAACGGGGTAGTACCGTCCTAACTGAATATCATGAATCTGTTGCGCTAAAAAGAAAGCTGAAGGCGCCGTCAGGTTCAAATTATCCGGATCGGAGCCTTGAATTGAACCCCCAGAGGATGGAAGTTAGTTCAAATTGCTGCAGCCACATTAATATCCAATTTCCAAGTGCAATATCTCCAAATTGGGACATCAACAGCGGCGTCTTCACATGCCCTAGCATATGTGCCATTACCGCCAACATGAATCTCAATTCTAGTGGGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2854 UMP1

Protein Analysis

342

Amino Acids

38.28

Weight (kDa)

9.0

Isoelectric Point (pI)

59.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 117 - 192 1.2e-34 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 751
AccB1I GGYRCC 1 cut(s) 823
AccB7I CCANNNNNTGG 2 cut(s) 257, 877
AccII CGCG 1 cut(s) 242
AccIII TCCGGA 1 cut(s) 844
AciI CCGC 5 cut(s) 36, 499, 681, 957, 993
AclWI GGATC 2 cut(s) 405, 855
AcuI CTGAAG 1 cut(s) 839
AcyI GRCGYC 2 cut(s) 824, 960
AdeI CACNNNGTG 1 cut(s) 260
AfaI GTAC 5 cut(s) 208, 249, 336, 568, 772
AfiI CCNNNNNNNGG 4 cut(s) 199, 257, 489, 877
AgeI ACCGGT 1 cut(s) 337
AgsI TTSAA 6 cut(s) 730, 740, 837, 860, 865, 891
AjnI CCWGG 3 cut(s) 130, 256, 384
AluBI AGCT 3 cut(s) 30, 66, 817
AluI AGCT 3 cut(s) 30, 66, 817
AlwI GGATC 2 cut(s) 405, 855
Aor13HI TCCGGA 1 cut(s) 844
AoxI GGCC 2 cut(s) 145, 381
ApeKI GCWGC 3 cut(s) 271, 897, 900
AseI ATTAAT 2 cut(s) 291, 909
AsiGI ACCGGT 1 cut(s) 337
AspLEI GCGC 2 cut(s) 805, 826
AspS9I GGNCC 2 cut(s) 197, 382
AsuC2I CCSGG 1 cut(s) 195
AsuHPI GGTGA 3 cut(s) 143, 246, 272
AvaII GGWCC 1 cut(s) 197
BanI GGYRCC 1 cut(s) 823
BanII GRGCYC 1 cut(s) 701
BbsI GAAGAC 3 cut(s) 552, 600, 955
BbvI GCAGC 3 cut(s) 283, 884, 912
BccI CCATC 4 cut(s) 259, 425, 524, 871
BceAI ACGGC 2 cut(s) 396, 811
BciT130I CCWGG 3 cut(s) 132, 258, 386
BcnI CCSGG 1 cut(s) 195
BfaI CTAG 8 cut(s) 170, 458, 485, 527, 564, 642, 975, 1014
BfmI CTRYAG 4 cut(s) 31, 709, 744, 898
BfoI RGCGCY 1 cut(s) 827
BfuAI ACCTGC 1 cut(s) 751
BglII AGATCT 2 cut(s) 372, 705
BisI GCNGC 5 cut(s) 37, 272, 898, 901, 958
BlsI GCNGC 5 cut(s) 38, 273, 899, 902, 959
BmcAI AGTACT 2 cut(s) 208, 568
Bme1390I CCNGG 4 cut(s) 132, 195, 258, 386
Bme18I GGWCC 1 cut(s) 197
BmgT120I GGNCC 2 cut(s) 197, 382
BmiI GGNNCC 3 cut(s) 698, 825, 854
BmrFI CCNGG 4 cut(s) 132, 195, 258, 386
BpiI GAAGAC 3 cut(s) 552, 600, 955
BplI GAGNNNNNCTC 2 cut(s) 685, 717
BpmI CTGGAG 1 cut(s) 153
BpuEI CTTGAG 1 cut(s) 99
BpuMI CCSGG 1 cut(s) 195
BsaBI GATNNNNATC 1 cut(s) 753
BsaHI GRCGYC 2 cut(s) 824, 960
BsaJI CCNNGG 4 cut(s) 193, 321, 384, 385
BsaWI WCCGGW 3 cut(s) 199, 337, 844
Bsc4I CCNNNNNNNGG 4 cut(s) 199, 257, 489, 877
Bse118I RCCGGY 3 cut(s) 267, 337, 360
Bse8I GATNNNNATC 1 cut(s) 753
BseAI TCCGGA 1 cut(s) 844
BseBI CCWGG 3 cut(s) 132, 258, 386
BseDI CCNNGG 4 cut(s) 193, 321, 384, 385
BseGI GGATG 4 cut(s) 304, 331, 618, 882
BseJI GATNNNNATC 1 cut(s) 753
BseLI CCNNNNNNNGG 4 cut(s) 199, 257, 489, 877
BseMII CTCAG 1 cut(s) 716
BseRI GAGGAG 2 cut(s) 240, 709
BseXI GCAGC 3 cut(s) 283, 884, 912
Bsh1236I CGCG 1 cut(s) 242
Bsh1285I CGRYCG 1 cut(s) 246
BshFI GGCC 2 cut(s) 147, 383
BshNI GGYRCC 1 cut(s) 823
BshTI ACCGGT 1 cut(s) 337
BsiEI CGRYCG 1 cut(s) 246
BsiSI CCGG 6 cut(s) 195, 200, 268, 338, 361, 845
BslFI GGGAC 1 cut(s) 959
BslI CCNNNNNNNGG 4 cut(s) 199, 257, 489, 877
BsmFI GGGAC 1 cut(s) 959
BsmI GAATGC 1 cut(s) 39
BsnI GGCC 2 cut(s) 147, 383
Bsp1286I GDGCHC 1 cut(s) 701
Bsp13I TCCGGA 1 cut(s) 844
Bsp143I GATC 8 cut(s) 157, 243, 372, 397, 442, 705, 733, 847
BspACI CCGC 5 cut(s) 36, 499, 681, 957, 993
BspANI GGCC 2 cut(s) 147, 383
BspCNI CTCAG 1 cut(s) 715
BspEI TCCGGA 1 cut(s) 844
BspFNI CGCG 1 cut(s) 242
BspHI TCATGA 1 cut(s) 790
BspLI GGNNCC 3 cut(s) 698, 825, 854
BspMAI CTGCAG 2 cut(s) 748, 902
BspMI ACCTGC 1 cut(s) 751
BspPI GGATC 2 cut(s) 405, 855
BspT107I GGYRCC 1 cut(s) 823
BsrFI RCCGGY 3 cut(s) 267, 337, 360
BssAI RCCGGY 3 cut(s) 267, 337, 360
BssECI CCNNGG 4 cut(s) 193, 321, 384, 385
BssMI GATC 8 cut(s) 157, 243, 372, 397, 442, 705, 733, 847
BssNI GRCGYC 2 cut(s) 824, 960
BssT1I CCWWGG 1 cut(s) 321
Bst2UI CCWGG 3 cut(s) 132, 258, 386
Bst4CI ACNGT 2 cut(s) 551, 775
Bst6I CTCTTC 3 cut(s) 13, 85, 111
BstACI GRCGYC 2 cut(s) 824, 960
BstC8I GCNNGC 1 cut(s) 475
BstDEI CTNAG 2 cut(s) 601, 702
BstF5I GGATG 4 cut(s) 304, 331, 618, 882
BstFNI CGCG 1 cut(s) 242
BstH2I RGCGCY 1 cut(s) 827
BstHHI GCGC 2 cut(s) 805, 826
BstKTI GATC 8 cut(s) 160, 246, 375, 400, 445, 708, 736, 850
BstMBI GATC 8 cut(s) 157, 243, 372, 397, 442, 705, 733, 847
BstMCI CGRYCG 1 cut(s) 246
BstMWI GCNNNNNNNGC 4 cut(s) 36, 144, 823, 992
BstNI CCWGG 3 cut(s) 132, 258, 386
BstNSI RCATGY 1 cut(s) 972
BstSCI CCNGG 4 cut(s) 130, 193, 256, 384
BstSFI CTRYAG 4 cut(s) 31, 709, 744, 898
BstUI CGCG 1 cut(s) 242
BstV1I GCAGC 3 cut(s) 283, 884, 912
BstV2I GAAGAC 3 cut(s) 552, 600, 955
BstX2I RGATCY 2 cut(s) 372, 705
BstYI RGATCY 2 cut(s) 372, 705
BsuRI GGCC 2 cut(s) 147, 383
BtsCI GGATG 4 cut(s) 304, 331, 618, 882
BveI ACCTGC 1 cut(s) 751
Cac8I GCNNGC 1 cut(s) 475
CciI TCATGA 1 cut(s) 790
CfoI GCGC 2 cut(s) 805, 826
Cfr10I RCCGGY 3 cut(s) 267, 337, 360
Cfr13I GGNCC 2 cut(s) 197, 382
CpoI CGGWCCG 1 cut(s) 197
CseI GACGC 1 cut(s) 949
CsiI ACCWGGT 1 cut(s) 256
Csp6I GTAC 5 cut(s) 207, 248, 335, 567, 771
CspAI ACCGGT 1 cut(s) 337
CspCI CAANNNNNGTGG 1 cut(s) 997
CspI CGGWCCG 1 cut(s) 197
CviAII CATG 3 cut(s) 791, 969, 1000
CviQI GTAC 5 cut(s) 207, 248, 335, 567, 771
DdeI CTNAG 2 cut(s) 601, 702
DinI GGCGCC 1 cut(s) 825
DpnI GATC 8 cut(s) 159, 245, 374, 399, 444, 707, 735, 849
DpnII GATC 8 cut(s) 157, 243, 372, 397, 442, 705, 733, 847
DraIII CACNNNGTG 1 cut(s) 260
Eam1104I CTCTTC 3 cut(s) 13, 85, 111
EarI CTCTTC 3 cut(s) 13, 85, 111
Eco130I CCWWGG 1 cut(s) 321
Eco24I GRGCYC 1 cut(s) 701
Eco47I GGWCC 1 cut(s) 197
Eco57I CTGAAG 1 cut(s) 839
EcoRII CCWGG 3 cut(s) 130, 256, 384
EcoT14I CCWWGG 1 cut(s) 321
EcoT38I GRGCYC 1 cut(s) 701
EgeI GGCGCC 1 cut(s) 825
EheI GGCGCC 1 cut(s) 825
ErhI CCWWGG 1 cut(s) 321
FaeI CATG 3 cut(s) 794, 972, 1003
FaqI GGGAC 1 cut(s) 959
FatI CATG 3 cut(s) 790, 968, 999
FauI CCCGC 1 cut(s) 674
FauNDI CATATG 1 cut(s) 980
Fnu4HI GCNGC 5 cut(s) 37, 272, 898, 901, 958
FokI GGATG 4 cut(s) 291, 338, 625, 889
FriOI GRGCYC 1 cut(s) 701
Fsp4HI GCNGC 5 cut(s) 37, 272, 898, 901, 958
FspBI CTAG 8 cut(s) 170, 458, 485, 527, 564, 642, 975, 1014
GlaI GCGC 2 cut(s) 804, 825
GluI GCNGC 5 cut(s) 37, 272, 898, 901, 958
GsuI CTGGAG 1 cut(s) 153
HaeII RGCGCY 1 cut(s) 827
HaeIII GGCC 2 cut(s) 147, 383
HapII CCGG 6 cut(s) 195, 200, 268, 338, 361, 845
HgaI GACGC 1 cut(s) 949
HhaI GCGC 2 cut(s) 805, 826
Hin1I GRCGYC 2 cut(s) 824, 960
Hin1II CATG 3 cut(s) 794, 972, 1003
Hin6I GCGC 2 cut(s) 803, 824
HinP1I GCGC 2 cut(s) 803, 824
HinfI GANTC 5 cut(s) 230, 411, 754, 794, 1003
HpaII CCGG 6 cut(s) 195, 200, 268, 338, 361, 845
HphI GGTGA 3 cut(s) 143, 246, 272
Hpy166II GTNNAC 1 cut(s) 175
Hpy188I TCNGA 5 cut(s) 224, 402, 574, 705, 852
Hpy188III TCNNGA 5 cut(s) 116, 737, 758, 791, 845
Hpy8I GTNNAC 1 cut(s) 175
HpyAV CCTTC 3 cut(s) 158, 619, 814
HpyCH4III ACNGT 2 cut(s) 551, 775
HpyCH4V TGCA 6 cut(s) 4, 331, 543, 746, 900, 929
HpyF10VI GCNNNNNNNGC 4 cut(s) 36, 144, 823, 992
HpyF3I CTNAG 2 cut(s) 601, 702
Hsp92I GRCGYC 2 cut(s) 824, 960
Hsp92II CATG 3 cut(s) 794, 972, 1003
HspAI GCGC 2 cut(s) 803, 824
KasI GGCGCC 1 cut(s) 823
Kpn2I TCCGGA 1 cut(s) 844
Kzo9I GATC 8 cut(s) 157, 243, 372, 397, 442, 705, 733, 847
LmnI GCTCC 3 cut(s) 501, 696, 852
Lsp1109I GCAGC 3 cut(s) 283, 884, 912
MabI ACCWGGT 1 cut(s) 256
MaeI CTAG 8 cut(s) 170, 458, 485, 527, 564, 642, 975, 1014
MaeIII GTNAC 1 cut(s) 260
MalI GATC 8 cut(s) 159, 245, 374, 399, 444, 707, 735, 849
MboI GATC 8 cut(s) 157, 243, 372, 397, 442, 705, 733, 847
MflI RGATCY 2 cut(s) 372, 705
MhlI GDGCHC 1 cut(s) 701
MluCI AATT 6 cut(s) 838, 860, 892, 917, 940, 1009
Mly113I GGCGCC 1 cut(s) 824
MlyI GAGTC 1 cut(s) 405
MroI TCCGGA 1 cut(s) 844
MseI TTAA 3 cut(s) 291, 909, 1024
MspA1I CMGCKG 1 cut(s) 957
MspI CCGG 6 cut(s) 195, 200, 268, 338, 361, 845
MspR9I CCNGG 4 cut(s) 132, 195, 258, 386
Mva1269I GAATGC 1 cut(s) 39
MvaI CCWGG 3 cut(s) 132, 258, 386
MvnI CGCG 1 cut(s) 242
MwoI GCNNNNNNNGC 4 cut(s) 36, 144, 823, 992
NarI GGCGCC 1 cut(s) 824
NciI CCSGG 1 cut(s) 195
NdeI CATATG 1 cut(s) 980
NdeII GATC 8 cut(s) 157, 243, 372, 397, 442, 705, 733, 847
NlaIII CATG 3 cut(s) 794, 972, 1003
NlaIV GGNNCC 3 cut(s) 698, 825, 854
NmuCI GTSAC 1 cut(s) 260
NspI RCATGY 1 cut(s) 972
PagI TCATGA 1 cut(s) 790
PasI CCCWGGG 1 cut(s) 385
PctI GAATGC 1 cut(s) 39
PfeI GAWTC 4 cut(s) 230, 754, 794, 1003
PflMI CCANNNNNTGG 2 cut(s) 257, 877
PinAI ACCGGT 1 cut(s) 337
PkrI GCNGC 5 cut(s) 38, 273, 899, 902, 959
Ple19I CGATCG 1 cut(s) 246
PleI GAGTC 1 cut(s) 405
PluTI GGCGCC 1 cut(s) 827
PpsI GAGTC 1 cut(s) 405
PshBI ATTAAT 2 cut(s) 291, 909
Psp6I CCWGG 3 cut(s) 130, 256, 384
PspGI CCWGG 3 cut(s) 130, 256, 384
PspN4I GGNNCC 3 cut(s) 698, 825, 854
PspPI GGNCC 2 cut(s) 197, 382
PstI CTGCAG 2 cut(s) 748, 902
PsuI RGATCY 2 cut(s) 372, 705
PvuI CGATCG 1 cut(s) 246
RsaI GTAC 5 cut(s) 208, 249, 336, 568, 772
RsaNI GTAC 5 cut(s) 207, 248, 335, 567, 771
Rsr2I CGGWCCG 1 cut(s) 197
RsrII CGGWCCG 1 cut(s) 197
SaqAI TTAA 3 cut(s) 291, 909, 1024
SatI GCNGC 5 cut(s) 37, 272, 898, 901, 958
Sau3AI GATC 8 cut(s) 157, 243, 372, 397, 442, 705, 733, 847
Sau96I GGNCC 2 cut(s) 197, 382
ScaI AGTACT 2 cut(s) 208, 568
SchI GAGTC 1 cut(s) 405
ScrFI CCNGG 4 cut(s) 132, 195, 258, 386
SduI GDGCHC 1 cut(s) 701
SetI ASST 9 cut(s) 32, 61, 68, 133, 259, 528, 745, 819, 835
SexAI ACCWGGT 1 cut(s) 256
SfcI CTRYAG 4 cut(s) 31, 709, 744, 898
SfoI GGCGCC 1 cut(s) 825
SinI GGWCC 1 cut(s) 197
SmlI CTYRAG 1 cut(s) 114
SmoI CTYRAG 1 cut(s) 114
Sse9I AATT 6 cut(s) 838, 860, 892, 917, 940, 1009
SsiI CCGC 5 cut(s) 36, 499, 681, 957, 993
SspDI GGCGCC 1 cut(s) 823
SspI AATATT 1 cut(s) 298
SspMI CTAG 8 cut(s) 170, 458, 485, 527, 564, 642, 975, 1014
StyD4I CCNGG 4 cut(s) 130, 193, 256, 384
StyI CCWWGG 1 cut(s) 321
TaaI ACNGT 2 cut(s) 551, 775
TaqI TCGA 1 cut(s) 441
TasI AATT 6 cut(s) 838, 860, 892, 917, 940, 1009
TatI WGTACW 2 cut(s) 206, 566
TauI GCSGC 2 cut(s) 39, 960
TfiI GAWTC 4 cut(s) 230, 754, 794, 1003
Tru1I TTAA 3 cut(s) 291, 909, 1024
Tru9I TTAA 3 cut(s) 291, 909, 1024
TseFI GTSAC 1 cut(s) 260
TseI GCWGC 3 cut(s) 271, 897, 900
Tsp45I GTSAC 1 cut(s) 260
TspDTI ATGAA 5 cut(s) 222, 638, 767, 807, 1016
Van91I CCANNNNNTGG 2 cut(s) 257, 877
VpaK11BI GGWCC 1 cut(s) 197
VspI ATTAAT 2 cut(s) 291, 909
XceI RCATGY 1 cut(s) 972
XspI CTAG 8 cut(s) 170, 458, 485, 527, 564, 642, 975, 1014
ZrmI AGTACT 2 cut(s) 208, 568
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.