RchiOBHm_Chr1g0342441

Protein of unknown function (DUF2854)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0005284
Physical Location & Seq
Forward (+)
34346505 .. 34349781
3277 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56906

Sequence Viewer

Length: 1083 bp
ATGTGCTCTTCCACTAATAATAACATTAGTAGTAGTGGTACTGTATTTCCTTTCCCACCTTATAACTTTCCCTTTTCCTCCTCTTCTTCTCATAACAGCCACCATCCTCTTCTTCCTCAAGAAAATACAATCTGTGGAGGCATTTTTGGCCTACACCATGATCAATTTTCCCTATTAAACAATTGTTTGCTGTCACCCGGACCGGAAAGTACTTTGGTCAACCTCGGAGGAGCTTCATCAAACGCGATCGTACCATCATCTGGAGGCTACCAGCAGCATTATGGTTATGGTAATAATATTACTCATCCCTATTTTGTTTCTAAGGAGGTGAGAGTACCGGTGGTTGCTGTGAAGAAAGACCGGCACAGCAAGATCTTCACTTCTCAGGGGTTGAGGGATCGGAGGGTAAGACTCTCCATCAATGTTGCCCGTGAGTTCTTCGATCTCCAAGACTTGCTAGGGTTTGACAAAGCCAGCAAAACCTTAGAGTGGCTGCTCAGCAATTCCACAAAGGCCATCAAAGACCTAGAAAAGAGCAAGTGCAATAACAGTACTAGTATATCATCTTCTAGTACTTCGGACTGTGATGATGTTTTGGACATAAACAACGAGGCGTCCGATGACAAGAGGAGGAAGATGAAGGAGGCTGCTGCTATAATGGCCAGAGCATCGCGGGCAAAGGCTAGAGCAAGAGCAAGAGAAAGAACAAGAGAGAAGATGTGCAGTACTAGTACGAGGAGCCCTCAGATCTGTAGCCAGTTGAGCTTGTTCAATGAGCTTGAACATGCAGATATGAATAAAGAACCGGGCAGTACACTCCTATCTATTTGTCAAGCTGAATATCATGAATCTGTTGCGCTCAAAAGAGAGCTGAAGGCGCCGTCAGTTTCCAATTATCATGATCGAAGCCTTGAATTGAACCCCAAAAGCACGGAACCTAGTTCAAATTGCTGCAGCCACATTAATATCCAATTTCCGAATGCAATATCTCAAAATTATTGGGACATCAGCGGCACTGTCTTCACATGCCCTAGCATTTGTGCCATTACCACCAACATGAATCTTAATTCTACGGGGTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2854 UMP1

Protein Analysis

360

Amino Acids

39.67

Weight (kDa)

8.4

Isoelectric Point (pI)

50.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 117 - 242 6.4e-37 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 63
AccB1I GGYRCC 1 cut(s) 877
AccB7I CCANNNNNTGG 1 cut(s) 260
AccII CGCG 2 cut(s) 245, 673
AciI CCGC 2 cut(s) 673, 1011
AclWI GGATC 1 cut(s) 405
AcoI YGGCCR 1 cut(s) 660
AcuI CTGAAG 1 cut(s) 893
AcyI GRCGYC 2 cut(s) 614, 878
AfaI GTAC 9 cut(s) 40, 211, 252, 336, 553, 574, 727, 733, 814
AfiI CCNNNNNNNGG 2 cut(s) 260, 489
AgeI ACCGGT 1 cut(s) 337
AgsI TTSAA 5 cut(s) 772, 782, 914, 919, 945
AhlI ACTAGT 2 cut(s) 554, 728
AluBI AGCT 5 cut(s) 233, 765, 778, 836, 871
AluI AGCT 5 cut(s) 233, 765, 778, 836, 871
Alw21I GWGCWC 1 cut(s) 8
AlwI GGATC 1 cut(s) 405
AoxI GGCC 3 cut(s) 148, 513, 660
ApeKI GCWGC 6 cut(s) 274, 493, 647, 650, 951, 954
AseI ATTAAT 1 cut(s) 963
AsiGI ACCGGT 1 cut(s) 337
AspLEI GCGC 2 cut(s) 859, 880
AspS9I GGNCC 1 cut(s) 200
AsuC2I CCSGG 2 cut(s) 198, 807
AsuHPI GGTGA 2 cut(s) 186, 340
AvaII GGWCC 1 cut(s) 200
BalI TGGCCA 1 cut(s) 662
BanI GGYRCC 1 cut(s) 877
BanII GRGCYC 1 cut(s) 743
BarI GAAGNNNNNNTAC 2 cut(s) 550, 582
BbsI GAAGAC 1 cut(s) 1012
Bbv12I GWGCWC 1 cut(s) 8
BbvI GCAGC 6 cut(s) 286, 480, 634, 637, 938, 966
BccI CCATC 4 cut(s) 111, 262, 425, 524
BceAI ACGGC 1 cut(s) 865
BclI TGATCA 1 cut(s) 160
BcnI CCSGG 2 cut(s) 198, 807
BcuI ACTAGT 2 cut(s) 554, 728
BfaI CTAG 8 cut(s) 458, 527, 555, 570, 684, 729, 939, 1032
BfmI CTRYAG 2 cut(s) 751, 952
BfoI RGCGCY 1 cut(s) 881
BglII AGATCT 2 cut(s) 372, 747
BisI GCNGC 7 cut(s) 275, 494, 648, 651, 952, 955, 1012
BlpI GCTNAGC 1 cut(s) 497
BlsI GCNGC 7 cut(s) 276, 495, 649, 652, 953, 956, 1013
BmcAI AGTACT 4 cut(s) 211, 553, 574, 727
Bme1390I CCNGG 2 cut(s) 198, 807
Bme18I GGWCC 1 cut(s) 200
BmgT120I GGNCC 1 cut(s) 200
BmiI GGNNCC 3 cut(s) 740, 879, 936
BmrFI CCNGG 2 cut(s) 198, 807
BmsI GCATC 1 cut(s) 677
BpiI GAAGAC 1 cut(s) 1012
BplI GAGNNNNNCTC 2 cut(s) 727, 759
BpmI CTGGAG 1 cut(s) 282
Bpu1102I GCTNAGC 1 cut(s) 497
BpuEI CTTGAG 1 cut(s) 102
BpuMI CCSGG 2 cut(s) 198, 807
BsaHI GRCGYC 2 cut(s) 614, 878
BsaJI CCNNGG 1 cut(s) 223
BsaWI WCCGGW 2 cut(s) 202, 337
Bsc4I CCNNNNNNNGG 2 cut(s) 260, 489
Bse118I RCCGGY 2 cut(s) 337, 360
Bse1I ACTGG 1 cut(s) 757
BseDI CCNNGG 1 cut(s) 223
BseGI GGATG 2 cut(s) 103, 304
BseLI CCNNNNNNNGG 2 cut(s) 260, 489
BseMII CTCAG 3 cut(s) 398, 511, 758
BseNI ACTGG 1 cut(s) 757
BseRI GAGGAG 4 cut(s) 70, 243, 643, 751
BseXI GCAGC 6 cut(s) 286, 480, 634, 637, 938, 966
BsgI GTGCAG 1 cut(s) 742
Bsh1236I CGCG 2 cut(s) 245, 673
Bsh1285I CGRYCG 1 cut(s) 249
BshFI GGCC 3 cut(s) 150, 515, 662
BshNI GGYRCC 1 cut(s) 877
BshTI ACCGGT 1 cut(s) 337
BsiEI CGRYCG 1 cut(s) 249
BsiHKAI GWGCWC 1 cut(s) 8
BsiSI CCGG 5 cut(s) 198, 203, 338, 361, 806
BslFI GGGAC 1 cut(s) 1016
BslI CCNNNNNNNGG 2 cut(s) 260, 489
BsmFI GGGAC 1 cut(s) 1016
BsmI GAATGC 1 cut(s) 985
BsnI GGCC 3 cut(s) 150, 515, 662
Bsp1286I GDGCHC 2 cut(s) 8, 743
Bsp143I GATC 7 cut(s) 160, 246, 372, 397, 442, 747, 901
Bsp1720I GCTNAGC 1 cut(s) 497
BspACI CCGC 2 cut(s) 673, 1011
BspANI GGCC 3 cut(s) 150, 515, 662
BspCNI CTCAG 3 cut(s) 397, 510, 757
BspFNI CGCG 2 cut(s) 245, 673
BspHI TCATGA 2 cut(s) 844, 898
BspLI GGNNCC 3 cut(s) 740, 879, 936
BspMAI CTGCAG 1 cut(s) 956
BspPI GGATC 1 cut(s) 405
BspQI GCTCTTC 1 cut(s) 13
BspT107I GGYRCC 1 cut(s) 877
BsrFI RCCGGY 2 cut(s) 337, 360
BsrI ACTGG 1 cut(s) 757
BssAI RCCGGY 2 cut(s) 337, 360
BssECI CCNNGG 1 cut(s) 223
BssMI GATC 7 cut(s) 160, 246, 372, 397, 442, 747, 901
BssNI GRCGYC 2 cut(s) 614, 878
Bst4CI ACNGT 4 cut(s) 43, 551, 584, 1018
Bst6I CTCTTC 3 cut(s) 13, 88, 114
BstACI GRCGYC 2 cut(s) 614, 878
BstC8I GCNNGC 2 cut(s) 475, 675
BstDEI CTNAG 5 cut(s) 321, 384, 484, 497, 744
BstF5I GGATG 2 cut(s) 103, 304
BstFNI CGCG 2 cut(s) 245, 673
BstH2I RGCGCY 1 cut(s) 881
BstHHI GCGC 2 cut(s) 859, 880
BstKTI GATC 7 cut(s) 163, 249, 375, 400, 445, 750, 904
BstMBI GATC 7 cut(s) 160, 246, 372, 397, 442, 747, 901
BstMCI CGRYCG 1 cut(s) 249
BstMWI GCNNNNNNNGC 5 cut(s) 147, 659, 674, 762, 877
BstNSI RCATGY 2 cut(s) 788, 1029
BstSCI CCNGG 2 cut(s) 196, 805
BstSFI CTRYAG 2 cut(s) 751, 952
BstUI CGCG 2 cut(s) 245, 673
BstV1I GCAGC 6 cut(s) 286, 480, 634, 637, 938, 966
BstV2I GAAGAC 1 cut(s) 1012
BstX2I RGATCY 2 cut(s) 372, 747
BstYI RGATCY 2 cut(s) 372, 747
BsuRI GGCC 3 cut(s) 150, 515, 662
BtgZI GCGATG 1 cut(s) 654
BtsCI GGATG 2 cut(s) 103, 304
BtsIMutI CAGTG 1 cut(s) 1014
Cac8I GCNNGC 2 cut(s) 475, 675
CciI TCATGA 2 cut(s) 844, 898
CfoI GCGC 2 cut(s) 859, 880
Cfr10I RCCGGY 2 cut(s) 337, 360
Cfr13I GGNCC 1 cut(s) 200
CpoI CGGWCCG 1 cut(s) 200
CseI GACGC 1 cut(s) 603
Csp6I GTAC 9 cut(s) 39, 210, 251, 335, 552, 573, 726, 732, 813
CspAI ACCGGT 1 cut(s) 337
CspI CGGWCCG 1 cut(s) 200
CviAII CATG 6 cut(s) 158, 785, 845, 899, 1026, 1057
CviQI GTAC 9 cut(s) 39, 210, 251, 335, 552, 573, 726, 732, 813
DdeI CTNAG 5 cut(s) 321, 384, 484, 497, 744
DinI GGCGCC 1 cut(s) 879
DpnI GATC 7 cut(s) 162, 248, 374, 399, 444, 749, 903
DpnII GATC 7 cut(s) 160, 246, 372, 397, 442, 747, 901
EaeI YGGCCR 1 cut(s) 660
Eam1104I CTCTTC 3 cut(s) 13, 88, 114
EarI CTCTTC 3 cut(s) 13, 88, 114
Eco24I GRGCYC 1 cut(s) 743
Eco47I GGWCC 1 cut(s) 200
Eco57I CTGAAG 1 cut(s) 893
EcoT38I GRGCYC 1 cut(s) 743
EgeI GGCGCC 1 cut(s) 879
EheI GGCGCC 1 cut(s) 879
FaeI CATG 6 cut(s) 161, 788, 848, 902, 1029, 1060
FaqI GGGAC 1 cut(s) 1016
FatI CATG 6 cut(s) 157, 784, 844, 898, 1025, 1056
FauI CCCGC 1 cut(s) 666
FbaI TGATCA 1 cut(s) 160
Fnu4HI GCNGC 7 cut(s) 275, 494, 648, 651, 952, 955, 1012
FokI GGATG 2 cut(s) 90, 291
FriOI GRGCYC 1 cut(s) 743
Fsp4HI GCNGC 7 cut(s) 275, 494, 648, 651, 952, 955, 1012
FspBI CTAG 8 cut(s) 458, 527, 555, 570, 684, 729, 939, 1032
GlaI GCGC 2 cut(s) 858, 879
GluI GCNGC 7 cut(s) 275, 494, 648, 651, 952, 955, 1012
GsuI CTGGAG 1 cut(s) 282
HaeII RGCGCY 1 cut(s) 881
HaeIII GGCC 3 cut(s) 150, 515, 662
HapII CCGG 5 cut(s) 198, 203, 338, 361, 806
HgaI GACGC 1 cut(s) 603
HhaI GCGC 2 cut(s) 859, 880
Hin1I GRCGYC 2 cut(s) 614, 878
Hin1II CATG 6 cut(s) 161, 788, 848, 902, 1029, 1060
Hin6I GCGC 2 cut(s) 857, 878
HinP1I GCGC 2 cut(s) 857, 878
HincII GTYRAC 1 cut(s) 220
HindII GTYRAC 1 cut(s) 220
HinfI GANTC 3 cut(s) 411, 848, 1060
HpaII CCGG 5 cut(s) 198, 203, 338, 361, 806
HphI GGTGA 2 cut(s) 186, 340
Hpy166II GTNNAC 2 cut(s) 220, 815
Hpy188I TCNGA 6 cut(s) 227, 402, 580, 619, 747, 978
Hpy188III TCNNGA 4 cut(s) 119, 261, 845, 899
Hpy8I GTNNAC 2 cut(s) 220, 815
HpyAV CCTTC 2 cut(s) 634, 868
HpyCH4III ACNGT 4 cut(s) 43, 551, 584, 1018
HpyCH4V TGCA 5 cut(s) 543, 723, 788, 954, 983
HpyF10VI GCNNNNNNNGC 5 cut(s) 147, 659, 674, 762, 877
HpyF3I CTNAG 5 cut(s) 321, 384, 484, 497, 744
Hsp92I GRCGYC 2 cut(s) 614, 878
Hsp92II CATG 6 cut(s) 161, 788, 848, 902, 1029, 1060
HspAI GCGC 2 cut(s) 857, 878
KasI GGCGCC 1 cut(s) 877
Ksp22I TGATCA 1 cut(s) 160
Kzo9I GATC 7 cut(s) 160, 246, 372, 397, 442, 747, 901
LguI GCTCTTC 1 cut(s) 13
LmnI GCTCC 2 cut(s) 230, 738
Lsp1109I GCAGC 6 cut(s) 286, 480, 634, 637, 938, 966
LweI GCATC 1 cut(s) 677
MaeI CTAG 8 cut(s) 458, 527, 555, 570, 684, 729, 939, 1032
MaeIII GTNAC 1 cut(s) 192
MalI GATC 7 cut(s) 162, 248, 374, 399, 444, 749, 903
MboI GATC 7 cut(s) 160, 246, 372, 397, 442, 747, 901
MfeI CAATTG 1 cut(s) 181
MflI RGATCY 2 cut(s) 372, 747
MhlI GDGCHC 2 cut(s) 8, 743
MlsI TGGCCA 1 cut(s) 662
MluCI AATT 9 cut(s) 164, 181, 502, 892, 914, 946, 971, 994, 1066
MluNI TGGCCA 1 cut(s) 662
Mly113I GGCGCC 1 cut(s) 878
MlyI GAGTC 1 cut(s) 405
Mox20I TGGCCA 1 cut(s) 662
MscI TGGCCA 1 cut(s) 662
MseI TTAA 4 cut(s) 176, 963, 1065, 1081
MslI CAYNNNNRTG 1 cut(s) 1055
Msp20I TGGCCA 1 cut(s) 662
MspA1I CMGCKG 1 cut(s) 1011
MspI CCGG 5 cut(s) 198, 203, 338, 361, 806
MspR9I CCNGG 2 cut(s) 198, 807
MunI CAATTG 1 cut(s) 181
Mva1269I GAATGC 1 cut(s) 985
MvnI CGCG 2 cut(s) 245, 673
MwoI GCNNNNNNNGC 5 cut(s) 147, 659, 674, 762, 877
NarI GGCGCC 1 cut(s) 878
NciI CCSGG 2 cut(s) 198, 807
NdeII GATC 7 cut(s) 160, 246, 372, 397, 442, 747, 901
NlaIII CATG 6 cut(s) 161, 788, 848, 902, 1029, 1060
NlaIV GGNNCC 3 cut(s) 740, 879, 936
NmuCI GTSAC 1 cut(s) 192
NspI RCATGY 2 cut(s) 788, 1029
PagI TCATGA 2 cut(s) 844, 898
PciSI GCTCTTC 1 cut(s) 13
PcsI WCGNNNNNNNCGW 1 cut(s) 615
PctI GAATGC 1 cut(s) 985
PfeI GAWTC 2 cut(s) 848, 1060
PflMI CCANNNNNTGG 1 cut(s) 260
PinAI ACCGGT 1 cut(s) 337
PkrI GCNGC 7 cut(s) 276, 495, 649, 652, 953, 956, 1013
Ple19I CGATCG 1 cut(s) 249
PleI GAGTC 1 cut(s) 405
PluTI GGCGCC 1 cut(s) 881
PpsI GAGTC 1 cut(s) 405
PshBI ATTAAT 1 cut(s) 963
PsiI TTATAA 1 cut(s) 63
PspN4I GGNNCC 3 cut(s) 740, 879, 936
PspPI GGNCC 1 cut(s) 200
PstI CTGCAG 1 cut(s) 956
PsuI RGATCY 2 cut(s) 372, 747
PvuI CGATCG 1 cut(s) 249
RsaI GTAC 9 cut(s) 40, 211, 252, 336, 553, 574, 727, 733, 814
RsaNI GTAC 9 cut(s) 39, 210, 251, 335, 552, 573, 726, 732, 813
RseI CAYNNNNRTG 1 cut(s) 1055
Rsr2I CGGWCCG 1 cut(s) 200
RsrII CGGWCCG 1 cut(s) 200
SapI GCTCTTC 1 cut(s) 13
SaqAI TTAA 4 cut(s) 176, 963, 1065, 1081
SatI GCNGC 7 cut(s) 275, 494, 648, 651, 952, 955, 1012
Sau3AI GATC 7 cut(s) 160, 246, 372, 397, 442, 747, 901
Sau96I GGNCC 1 cut(s) 200
ScaI AGTACT 4 cut(s) 211, 553, 574, 727
SchI GAGTC 1 cut(s) 405
ScrFI CCNGG 2 cut(s) 198, 807
SduI GDGCHC 2 cut(s) 8, 743
SfaNI GCATC 1 cut(s) 677
SfcI CTRYAG 2 cut(s) 751, 952
SfoI GGCGCC 1 cut(s) 879
SinI GGWCC 1 cut(s) 200
SmiMI CAYNNNNRTG 1 cut(s) 1055
SmlI CTYRAG 1 cut(s) 117
SmoI CTYRAG 1 cut(s) 117
SpeI ACTAGT 2 cut(s) 554, 728
Sse9I AATT 9 cut(s) 164, 181, 502, 892, 914, 946, 971, 994, 1066
SsiI CCGC 2 cut(s) 673, 1011
SspDI GGCGCC 1 cut(s) 877
SspI AATATT 1 cut(s) 298
SspMI CTAG 8 cut(s) 458, 527, 555, 570, 684, 729, 939, 1032
StyD4I CCNGG 2 cut(s) 196, 805
TaaI ACNGT 4 cut(s) 43, 551, 584, 1018
TaqI TCGA 2 cut(s) 441, 904
TasI AATT 9 cut(s) 164, 181, 502, 892, 914, 946, 971, 994, 1066
TatI WGTACW 5 cut(s) 209, 551, 572, 725, 812
TauI GCSGC 1 cut(s) 1014
TfiI GAWTC 2 cut(s) 848, 1060
Tru1I TTAA 4 cut(s) 176, 963, 1065, 1081
Tru9I TTAA 4 cut(s) 176, 963, 1065, 1081
TscAI CASTG 1 cut(s) 1021
TseFI GTSAC 1 cut(s) 192
TseI GCWGC 6 cut(s) 274, 493, 647, 650, 951, 954
Tsp45I GTSAC 1 cut(s) 192
TspDTI ATGAA 5 cut(s) 225, 653, 809, 861, 1073
TspGWI ACGGA 1 cut(s) 947
TspRI CASTG 1 cut(s) 1021
Van91I CCANNNNNTGG 1 cut(s) 260
VpaK11BI GGWCC 1 cut(s) 200
VspI ATTAAT 1 cut(s) 963
XceI RCATGY 2 cut(s) 788, 1029
XcmI CCANNNNNNNNNTGG 1 cut(s) 278
XspI CTAG 8 cut(s) 458, 527, 555, 570, 684, 729, 939, 1032
ZrmI AGTACT 4 cut(s) 211, 553, 574, 727
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.