Rorug02G0501500

Protein of unknown function (DUF2854)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0005284
Physical Location & Seq
Reverse (-)
63373897 .. 63374934
1038 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0501500.1

Sequence Viewer

Length: 1038 bp
ATGTTTATTGATGCTTTCTGCAGAGTGCTCGCAAGTCACAACCAAGCCAAAGCCAGAGCCAGCCACGGACTCTCTTGTGTTGCTTGCCTAGATTTGTCCTTTACTAATTTAACCGTTGTTATCAGCATCTTTGAATTACTTCGCCCAATCAATGTTACCCCGAACTCCAGAAGGGACATCCAGAAGGGACATATGCCCTTTTGCCTCTTAGTACGCATCGATGTGCGGAATGTTATAAAGGGTGCGTATTGTTTCAGCTCTGGACTGCTACGATTGATGTCCAGTACTTTGCAGAAGAACTATAACCAAGTTGCCATGCTCCACAAGTTCCTCAATATCGGTAAACTTAAGCCATTCTCAAAGCGTGTGCCTGTGCCGGTGCCGCCTAAGCAAGCTCCGGCACAGTCAGAGATGGGCAGTAACTCTATTTTGAAGGTTGTTCACGCAGGTGGAAATGTTGAGAGTTACTACATGGCTATTCCTGCAGCCAAGATTTTGGAGAAGTACCCTTCTTTCTTGCTCGCTAGGCCTGAAGTCTTTAGGCGGCCGTGGGACTCAGTAGTGAAGCCGAATGCAATACTCACACCCGGAGAAAAAGTCTTTCTTGTTCCCCGCAGGACTGTGAGGAAGCTCCGTCGCAGAATACGAAGACCCGGGAAGGATTTTTCAGTCAATTCTTTCATGTCTCAATCGTCTATTGATGTATCAACTGAGACTCTATCACAGAGGAGAGATGTCGGTAGTGCAGTTGGTGATGCAAGTGAGAGTGACGCTTCTATTTGTAGTGCTATTAGCAGAAACAAAAGTGATGGCAAGAAGCATGTGACATTTTTTGGCATCAAGAAACATGTGACATTTGCTGGCCTTGATGTGAAGCACAAGCCGAAGAAGACTCACAGCGAAATCGAGGAGCAAGATTCGAGTGAAAGCTCGAGTTCTCTAAAATCTCTCGGAGGGAGAAGGAGGGTACGGATTGTAACATGGCAGCCGACTCTTACAGCAATAACAGAAACTCATGGGAATGATTTGATGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2854 UMP1

Protein Analysis

345

Amino Acids

38.42

Weight (kDa)

10.22

Isoelectric Point (pI)

65.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PADRE PF14009 138 - 337 6.8e-15 PADRE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 236
AarI CACCTGC 1 cut(s) 437
Acc36I ACCTGC 1 cut(s) 437
AccB1I GGYRCC 1 cut(s) 379
AciI CCGC 4 cut(s) 226, 383, 544, 613
AcoI YGGCCR 1 cut(s) 545
AcuI CTGAAG 1 cut(s) 552
AfaI GTAC 4 cut(s) 213, 286, 506, 969
AflII CTTAAG 1 cut(s) 347
AflIII ACRYGT 1 cut(s) 847
AgsI TTSAA 2 cut(s) 134, 433
AleI CACNNNNGTG 1 cut(s) 447
AluBI AGCT 4 cut(s) 258, 395, 631, 930
AluI AGCT 4 cut(s) 258, 395, 631, 930
Alw21I GWGCWC 1 cut(s) 30
Alw26I GTCTC 2 cut(s) 690, 707
Ama87I CYCGRG 2 cut(s) 653, 931
AoxI GGCC 3 cut(s) 527, 545, 862
ApeKI GCWGC 2 cut(s) 485, 985
Asp700I GAANNNNTTC 1 cut(s) 138
AsuC2I CCSGG 3 cut(s) 588, 654, 655
AsuHPI GGTGA 1 cut(s) 764
AvaI CYCGRG 2 cut(s) 653, 931
BanI GGYRCC 1 cut(s) 379
BbsI GAAGAC 2 cut(s) 655, 896
Bbv12I GWGCWC 1 cut(s) 30
BbvI GCAGC 2 cut(s) 497, 997
BccI CCATC 2 cut(s) 406, 803
BceAI ACGGC 1 cut(s) 532
BcgI CGANNNNNNTGC 2 cut(s) 10, 44
BcnI CCSGG 3 cut(s) 588, 654, 655
BcoDI GTCTC 2 cut(s) 690, 707
BfaI CTAG 2 cut(s) 89, 525
BfmI CTRYAG 2 cut(s) 19, 483
BfrI CTTAAG 1 cut(s) 347
BfuAI ACCTGC 1 cut(s) 437
BisI GCNGC 4 cut(s) 383, 486, 545, 986
BlsI GCNGC 4 cut(s) 384, 487, 546, 987
BmcAI AGTACT 1 cut(s) 286
Bme1390I CCNGG 3 cut(s) 588, 654, 655
BmeT110I CYCGRG 2 cut(s) 653, 931
BmiI GGNNCC 1 cut(s) 381
BmrFI CCNGG 3 cut(s) 588, 654, 655
BmsI GCATC 4 cut(s) 135, 225, 745, 846
BpiI GAAGAC 2 cut(s) 655, 896
BpmI CTGGAG 1 cut(s) 151
Bpu10I CCTNAGC 1 cut(s) 387
BpuMI CCSGG 3 cut(s) 588, 654, 655
Bsa29I ATCGAT 1 cut(s) 219
BsaJI CCNNGG 3 cut(s) 64, 548, 653
BsaXI ACNNNNNCTCC 2 cut(s) 582, 612
Bse118I RCCGGY 1 cut(s) 376
Bse1I ACTGG 1 cut(s) 282
BseCI ATCGAT 1 cut(s) 219
BseDI CCNNGG 3 cut(s) 64, 548, 653
BseGI GGATG 1 cut(s) 177
BseMII CTCAG 2 cut(s) 570, 702
BseNI ACTGG 1 cut(s) 282
BseRI GAGGAG 2 cut(s) 742, 923
BseX3I CGGCCG 1 cut(s) 545
BseXI GCAGC 2 cut(s) 497, 997
BsgI GTGCAG 1 cut(s) 765
Bsh1285I CGRYCG 1 cut(s) 548
BshFI GGCC 3 cut(s) 529, 547, 864
BshNI GGYRCC 1 cut(s) 379
BshVI ATCGAT 1 cut(s) 219
BsiEI CGRYCG 1 cut(s) 548
BsiHKAI GWGCWC 1 cut(s) 30
BsiHKCI CYCGRG 2 cut(s) 653, 931
BsiSI CCGG 4 cut(s) 377, 398, 588, 654
BslFI GGGAC 3 cut(s) 188, 201, 566
BsmAI GTCTC 2 cut(s) 690, 707
BsmFI GGGAC 3 cut(s) 188, 201, 566
BsmI GAATGC 1 cut(s) 577
BsnI GGCC 3 cut(s) 529, 547, 864
BsoBI CYCGRG 2 cut(s) 653, 931
Bsp1286I GDGCHC 1 cut(s) 30
BspACI CCGC 4 cut(s) 226, 383, 544, 613
BspANI GGCC 3 cut(s) 529, 547, 864
BspCNI CTCAG 2 cut(s) 569, 703
BspDI ATCGAT 1 cut(s) 219
BspLI GGNNCC 1 cut(s) 381
BspMAI CTGCAG 2 cut(s) 23, 487
BspMI ACCTGC 1 cut(s) 437
BspT107I GGYRCC 1 cut(s) 379
BspTI CTTAAG 1 cut(s) 347
BsrFI RCCGGY 1 cut(s) 376
BsrI ACTGG 1 cut(s) 282
BssAI RCCGGY 1 cut(s) 376
BssECI CCNNGG 3 cut(s) 64, 548, 653
Bst4CI ACNGT 3 cut(s) 115, 405, 622
BstAFI CTTAAG 1 cut(s) 347
BstC8I GCNNGC 6 cut(s) 30, 61, 85, 393, 522, 862
BstDEI CTNAG 4 cut(s) 208, 387, 556, 711
BstDSI CCRYGG 2 cut(s) 64, 548
BstF5I GGATG 1 cut(s) 177
BstMAI GTCTC 2 cut(s) 690, 707
BstMCI CGRYCG 1 cut(s) 548
BstMWI GCNNNNNNNGC 4 cut(s) 382, 388, 482, 526
BstNSI RCATGY 2 cut(s) 824, 851
BstSCI CCNGG 3 cut(s) 586, 652, 653
BstSFI CTRYAG 2 cut(s) 19, 483
BstV1I GCAGC 2 cut(s) 497, 997
BstV2I GAAGAC 2 cut(s) 655, 896
BstXI CCANNNNNNTGG 1 cut(s) 496
BstZI CGGCCG 1 cut(s) 545
Bsu15I ATCGAT 1 cut(s) 219
BsuRI GGCC 3 cut(s) 529, 547, 864
BsuTUI ATCGAT 1 cut(s) 219
BtgI CCRYGG 2 cut(s) 64, 548
BtsCI GGATG 1 cut(s) 177
BveI ACCTGC 1 cut(s) 437
Cac8I GCNNGC 6 cut(s) 30, 61, 85, 393, 522, 862
Cfr10I RCCGGY 1 cut(s) 376
Cfr9I CCCGGG 1 cut(s) 653
ClaI ATCGAT 1 cut(s) 219
CseI GACGC 1 cut(s) 779
Csp6I GTAC 4 cut(s) 212, 285, 505, 968
CviAII CATG 7 cut(s) 316, 472, 682, 821, 848, 981, 1016
CviQI GTAC 4 cut(s) 212, 285, 505, 968
DdeI CTNAG 4 cut(s) 208, 387, 556, 711
EaeI YGGCCR 1 cut(s) 545
EagI CGGCCG 1 cut(s) 545
EclXI CGGCCG 1 cut(s) 545
Eco147I AGGCCT 1 cut(s) 529
Eco52I CGGCCG 1 cut(s) 545
Eco57I CTGAAG 1 cut(s) 552
Eco88I CYCGRG 2 cut(s) 653, 931
FaeI CATG 7 cut(s) 319, 475, 685, 824, 851, 984, 1019
FalI AAGNNNNNCTT 2 cut(s) 588, 620
FaqI GGGAC 3 cut(s) 188, 201, 566
FatI CATG 7 cut(s) 315, 471, 681, 820, 847, 980, 1015
FauI CCCGC 1 cut(s) 620
FauNDI CATATG 1 cut(s) 192
Fnu4HI GCNGC 4 cut(s) 383, 486, 545, 986
FokI GGATG 1 cut(s) 164
Fsp4HI GCNGC 4 cut(s) 383, 486, 545, 986
FspBI CTAG 2 cut(s) 89, 525
GluI GCNGC 4 cut(s) 383, 486, 545, 986
GsuI CTGGAG 1 cut(s) 151
HaeIII GGCC 3 cut(s) 529, 547, 864
HapII CCGG 4 cut(s) 377, 398, 588, 654
HgaI GACGC 1 cut(s) 779
Hin1II CATG 7 cut(s) 319, 475, 685, 824, 851, 984, 1019
HinfI GANTC 6 cut(s) 69, 554, 715, 892, 917, 991
HpaII CCGG 4 cut(s) 377, 398, 588, 654
HphI GGTGA 1 cut(s) 764
Hpy166II GTNNAC 2 cut(s) 344, 442
Hpy188I TCNGA 2 cut(s) 409, 953
Hpy188III TCNNGA 4 cut(s) 168, 181, 261, 841
Hpy8I GTNNAC 2 cut(s) 344, 442
Hpy99I CGWCG 1 cut(s) 639
HpyAV CCTTC 6 cut(s) 165, 178, 427, 519, 652, 954
HpyCH4III ACNGT 3 cut(s) 115, 405, 622
HpyCH4V TGCA 6 cut(s) 21, 292, 485, 575, 746, 758
HpyF10VI GCNNNNNNNGC 4 cut(s) 382, 388, 482, 526
HpyF3I CTNAG 4 cut(s) 208, 387, 556, 711
Hsp92II CATG 7 cut(s) 319, 475, 685, 824, 851, 984, 1019
LmnI GCTCC 4 cut(s) 324, 400, 636, 910
Lsp1109I GCAGC 2 cut(s) 497, 997
LweI GCATC 4 cut(s) 135, 225, 745, 846
MaeI CTAG 2 cut(s) 89, 525
MaeIII GTNAC 8 cut(s) 35, 154, 419, 464, 767, 823, 850, 976
MboII GAAGA 4 cut(s) 307, 660, 898, 901
MhlI GDGCHC 1 cut(s) 30
MluCI AATT 3 cut(s) 106, 134, 673
MlyI GAGTC 5 cut(s) 63, 548, 709, 886, 985
MnlI CCTC 7 cut(s) 215, 341, 618, 720, 901, 947, 957
MroXI GAANNNNTTC 1 cut(s) 138
MseI TTAA 2 cut(s) 110, 348
MslI CAYNNNNRTG 3 cut(s) 221, 447, 1020
MspCI CTTAAG 1 cut(s) 347
MspI CCGG 4 cut(s) 377, 398, 588, 654
MspR9I CCNGG 3 cut(s) 588, 654, 655
Mva1269I GAATGC 1 cut(s) 577
MwoI GCNNNNNNNGC 4 cut(s) 382, 388, 482, 526
NciI CCSGG 3 cut(s) 588, 654, 655
NdeI CATATG 1 cut(s) 192
NlaIII CATG 7 cut(s) 319, 475, 685, 824, 851, 984, 1019
NlaIV GGNNCC 1 cut(s) 381
NmuCI GTSAC 4 cut(s) 35, 767, 823, 850
NspI RCATGY 2 cut(s) 824, 851
OliI CACNNNNGTG 1 cut(s) 447
PaeR7I CTCGAG 1 cut(s) 931
PaqCI CACCTGC 1 cut(s) 437
PceI AGGCCT 1 cut(s) 529
PciI ACATGT 1 cut(s) 847
PcsI WCGNNNNNNNCGW 1 cut(s) 643
PctI GAATGC 1 cut(s) 577
PdmI GAANNNNTTC 1 cut(s) 138
PfeI GAWTC 1 cut(s) 917
PkrI GCNGC 4 cut(s) 384, 487, 546, 987
PleI GAGTC 5 cut(s) 63, 548, 709, 886, 985
PpsI GAGTC 5 cut(s) 63, 548, 709, 886, 985
PscI ACATGT 1 cut(s) 847
PsiI TTATAA 1 cut(s) 236
PspN4I GGNNCC 1 cut(s) 381
PspXI VCTCGAGB 1 cut(s) 931
PstI CTGCAG 2 cut(s) 23, 487
RsaI GTAC 4 cut(s) 213, 286, 506, 969
RsaNI GTAC 4 cut(s) 212, 285, 505, 968
RseI CAYNNNNRTG 3 cut(s) 221, 447, 1020
SaqAI TTAA 2 cut(s) 110, 348
SatI GCNGC 4 cut(s) 383, 486, 545, 986
ScaI AGTACT 1 cut(s) 286
SchI GAGTC 5 cut(s) 63, 548, 709, 886, 985
ScrFI CCNGG 3 cut(s) 588, 654, 655
SduI GDGCHC 1 cut(s) 30
SetI ASST 6 cut(s) 260, 397, 438, 451, 633, 932
SfaNI GCATC 4 cut(s) 135, 225, 745, 846
SfcI CTRYAG 2 cut(s) 19, 483
Sfr274I CTCGAG 1 cut(s) 931
SlaI CTCGAG 1 cut(s) 931
SmaI CCCGGG 1 cut(s) 655
SmiMI CAYNNNNRTG 3 cut(s) 221, 447, 1020
SmlI CTYRAG 2 cut(s) 347, 931
SmoI CTYRAG 2 cut(s) 347, 931
Sse9I AATT 3 cut(s) 106, 134, 673
SseBI AGGCCT 1 cut(s) 529
SsiI CCGC 4 cut(s) 226, 383, 544, 613
SspMI CTAG 2 cut(s) 89, 525
StuI AGGCCT 1 cut(s) 529
StyD4I CCNGG 3 cut(s) 586, 652, 653
TaaI ACNGT 3 cut(s) 115, 405, 622
TaqI TCGA 4 cut(s) 219, 906, 920, 932
TasI AATT 3 cut(s) 106, 134, 673
TatI WGTACW 1 cut(s) 284
TauI GCSGC 2 cut(s) 385, 547
TfiI GAWTC 1 cut(s) 917
Tru1I TTAA 2 cut(s) 110, 348
Tru9I TTAA 2 cut(s) 110, 348
TseFI GTSAC 4 cut(s) 35, 767, 823, 850
TseI GCWGC 2 cut(s) 485, 985
Tsp45I GTSAC 4 cut(s) 35, 767, 823, 850
TspDTI ATGAA 1 cut(s) 670
TspGWI ACGGA 3 cut(s) 81, 623, 985
TspMI CCCGGG 1 cut(s) 653
Vha464I CTTAAG 1 cut(s) 347
XceI RCATGY 2 cut(s) 824, 851
XhoI CTCGAG 1 cut(s) 931
XmaI CCCGGG 1 cut(s) 653
XmnI GAANNNNTTC 1 cut(s) 138
XspI CTAG 2 cut(s) 89, 525
ZrmI AGTACT 1 cut(s) 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.