Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0005284

Physical Location & Seq

Genomic Coordinates Forward (+)

23413380 .. 23415195

Gene Structure 1816 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G240200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

ATGTTTTCATCTTGCAGCAGCAATATTAATAGTACTTCTGTAAGTCCTTTTCAACCTTACTTTCCCTTGTCTTCTTCAAATTACCACCCTCCTCCTCCTCCTCCACCTTCTTTTCCTTGTGTGAACCAAGAGGCTTGTAGTGGAGACATTTTCCTTCACCACAATATTCAAGGGTACCCCATCTCTGGTCAATTTCCACTTCATAACAATGCCTTAATGGCACCTCCTCTTCCTCAAAGCTTGACCCATTTGGGAGTTTCATCAAACACTGTACCTCCTAGCATAAACGCTGATGATCATCATCCCTACCATAATTACTATGGTGCCATTAACAATGATAATATTTTTCCTCATTTCCTTCATTCTTCTAGAGAAGATATAGTAGCGCCGCCGATGAAGAAAGATCGGCACAGCAAGATCTTCACTGCTCAGGGCTTGAGGGACCGGAGGGTTAGACTGTCCATCAATGTTGCCCGTCAATTCTTTGACCTCCAAGACCTGCTAGGGTTTGACAAGGCAAGTAAAACCCTAGAATGGCTTCTCACCAAGTCAAGAAGGGCCATCAAACAGCTTGGGACTCGGAACAAACACTTGACCTGCAGTACTAGTACTGGGCGTTCCAAGAGTTTGACTTCGAGTTCAGGGTGTGATGACGATGACGCCGATTCAGACACAAACGAGGTGGAAAACGTAGCAAGCAGAGAAAAAGAGGTGATGTTGATGATGAAGAAAAAGATGAAAGAATCTGAATCTGAATCTGCTAATGTTTATGGCACGAAAGACTCGAGGGCAAAGGCAAGAGCAAGGGCAAGGGAAAGGACAAGAGAGAAATTAATGTGCACTACTGGGAGCAGGCCTCAGATGTTGAACCAATTGAAGTTATTCAATGAGCTTGATCACCATCAATCTAACAATAATTGTAAAACAATGTCATCATCTTCAGCAAAGGCCAATATTGGAGATCATCCTGAGAATCAAGAACTGGGCTCCCTCCTAGCTAATCAATTAGCTCATCATCATGAGGACGATCCATCTGTTCATGTCATCAAAAGAAACAAGTTGAAGCAGTATTCATCAGTTTATTCCAATTATAATCAGCAAAAGTATCTCAATGTGGTGTCAGCAGAAAATACAGATCAGAGTTCCAACAGCCACATCCAATTTCCCAATGCATTTCAAAATTGGGACACCAATGGCGCCTTCCCATGCCCTAACATTCATTGTGCCATTACCAGCATCAATCTTTCTACCGGAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0009908 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

420

Amino Acids

46.88

Weight (kDa)

8.48

Isoelectric Point (pI)

55.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005284)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67260 AT1G67260 AT1G67260
fragaria_vesca	FvH4_6g45410 FvH4_6g45410
malus_domestica	MD09G1083300.v1.1 MD09G1083500.v1.1 MD17G1073600.v1.1
prunus_persica	Prupe.3G240200_v2.0.a1
pyrus_communis	pycom09g00970 pycom17g07450
rosa_chinensis	RchiOBHm_Chr1g0342441 RchiOBHm_Chr2g0163221
rosa_laevigata	RLG00000021385
rosa_multiflora	Rmu_sc0000979.1_g000009 Rmu_sc0002045.1_g000011 Rmu_sc0021084.1_g000007
rosa_roxburghii	Rroxscaffold_2G00087450
rosa_rugosa	Rorug02G0501300 Rorug02G0501400 Rorug02G0501500 Rorug02G0501600 Rorug02G0501600
rosa_samantha	Rh2AG568500 Rh2BG580400 Rh2CG550200 Rh2DG590300
rosa_wichuraiana	Rw1G013840 Rw2G047010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1092
Acc36I	ACCTGC	2 cut(s)	507, 605
Acc65I	GGTACC	1 cut(s)	174
AccB1I	GGYRCC	4 cut(s)	174, 220, 323, 1196
AciI	CCGC	1 cut(s)	389
AclWI	GGATC	1 cut(s)	1022
AcuI	CTGAAG	1 cut(s)	924
AcyI	GRCGYC	2 cut(s)	660, 1197
AfaI	GTAC	5 cut(s)	34, 176, 273, 604, 610
AfiI	CCNNNNNNNGG	2 cut(s)	185, 534
AgsI	TTSAA	8 cut(s)	53, 78, 170, 868, 877, 886, 1063, 1178
AhlI	ACTAGT	1 cut(s)	605
AjuI	GAANNNNNNNTTGG	2 cut(s)	1184, 1216
AluBI	AGCT	5 cut(s)	240, 571, 892, 998, 1010
AluI	AGCT	5 cut(s)	240, 571, 892, 998, 1010
Alw21I	GWGCWC	1 cut(s)	842
Alw26I	GTCTC	1 cut(s)	138
Alw44I	GTGCAC	1 cut(s)	838
AlwI	GGATC	1 cut(s)	1022
Ama87I	CYCGRG	1 cut(s)	784
AoxI	GGCC	3 cut(s)	558, 854, 948
ApaLI	GTGCAC	1 cut(s)	838
ApeKI	GCWGC	2 cut(s)	15, 18
AseI	ATTAAT	2 cut(s)	27, 833
Asp700I	GAANNNNTTC	2 cut(s)	537, 881
Asp718I	GGTACC	1 cut(s)	174
AspLEI	GCGC	2 cut(s)	388, 1199
AspS9I	GGNCC	2 cut(s)	442, 558
AsuHPI	GGTGA	4 cut(s)	149, 535, 724, 890
AvaI	CYCGRG	1 cut(s)	784
AvaII	GGWCC	1 cut(s)	442
BaeGI	GKGCMC	1 cut(s)	842
BanI	GGYRCC	4 cut(s)	174, 220, 323, 1196
BanII	GRGCYC	1 cut(s)	989
BbsI	GAAGAC	1 cut(s)	63
Bbv12I	GWGCWC	1 cut(s)	842
BbvI	GCAGC	2 cut(s)	27, 30
BccI	CCATC	5 cut(s)	188, 470, 569, 909, 1039
BclI	TGATCA	2 cut(s)	295, 895
BcoDI	GTCTC	1 cut(s)	138
BcuI	ACTAGT	1 cut(s)	605
BfaI	CTAG	6 cut(s)	279, 369, 503, 530, 606, 995
BfmI	CTRYAG	1 cut(s)	598
BfoI	RGCGCY	2 cut(s)	389, 1200
BfuAI	ACCTGC	2 cut(s)	507, 605
BglI	GCCNNNNNGGC	1 cut(s)	218
BglII	AGATCT	1 cut(s)	417
BisI	GCNGC	3 cut(s)	16, 19, 389
BlsI	GCNGC	3 cut(s)	17, 20, 390
BmcAI	AGTACT	3 cut(s)	34, 604, 610
Bme18I	GGWCC	1 cut(s)	442
BmeT110I	CYCGRG	1 cut(s)	784
BmgT120I	GGNCC	2 cut(s)	442, 558
BmiI	GGNNCC	6 cut(s)	176, 222, 325, 443, 988, 1198
BmrI	ACTGGG	3 cut(s)	621, 855, 992
BmsI	GCATC	1 cut(s)	1245
BmuI	ACTGGG	3 cut(s)	621, 855, 992
BpiI	GAAGAC	1 cut(s)	63
BplI	GAGNNNNNCTC	2 cut(s)	841, 873
Bpu10I	CCTNAGC	1 cut(s)	429
BpuEI	CTTGAG	1 cut(s)	457
BsaBI	GATNNNNATC	3 cut(s)	297, 300, 900
BsaHI	GRCGYC	2 cut(s)	660, 1197
BsaWI	WCCGGW	2 cut(s)	444, 1250
BsaXI	ACNNNNNCTCC	2 cut(s)	259, 289
Bsc4I	CCNNNNNNNGG	2 cut(s)	185, 534
Bse1I	ACTGG	3 cut(s)	616, 850, 987
Bse8I	GATNNNNATC	3 cut(s)	297, 300, 900
BseGI	GGATG	3 cut(s)	301, 964, 1155
BseJI	GATNNNNATC	3 cut(s)	297, 300, 900
BseLI	CCNNNNNNNGG	2 cut(s)	185, 534
BseMII	CTCAG	3 cut(s)	443, 872, 960
BseNI	ACTGG	3 cut(s)	616, 850, 987
BseRI	GAGGAG	5 cut(s)	81, 84, 87, 90, 216
BseSI	GKGCMC	1 cut(s)	842
BseXI	GCAGC	2 cut(s)	27, 30
BshFI	GGCC	3 cut(s)	560, 856, 950
BshNI	GGYRCC	4 cut(s)	174, 220, 323, 1196
BsiHKAI	GWGCWC	1 cut(s)	842
BsiHKCI	CYCGRG	1 cut(s)	784
BsiSI	CCGG	2 cut(s)	445, 1251
BslFI	GGGAC	3 cut(s)	455, 589, 1199
BslI	CCNNNNNNNGG	2 cut(s)	185, 534
BsmAI	GTCTC	1 cut(s)	138
BsmFI	GGGAC	3 cut(s)	455, 589, 1199
BsnI	GGCC	3 cut(s)	560, 856, 950
BsoBI	CYCGRG	1 cut(s)	784
Bsp1286I	GDGCHC	2 cut(s)	842, 989
Bsp143I	GATC	7 cut(s)	295, 403, 417, 895, 961, 1027, 1135
BspACI	CCGC	1 cut(s)	389
BspANI	GGCC	3 cut(s)	560, 856, 950
BspCNI	CTCAG	3 cut(s)	442, 871, 961
BspHI	TCATGA	1 cut(s)	1018
BspLI	GGNNCC	6 cut(s)	176, 222, 325, 443, 988, 1198
BspMAI	CTGCAG	1 cut(s)	602
BspMI	ACCTGC	2 cut(s)	507, 605
BspPI	GGATC	1 cut(s)	1022
BspT107I	GGYRCC	4 cut(s)	174, 220, 323, 1196
BsrI	ACTGG	3 cut(s)	616, 850, 987
BssMI	GATC	7 cut(s)	295, 403, 417, 895, 961, 1027, 1135
BssNI	GRCGYC	2 cut(s)	660, 1197
Bst4CI	ACNGT	2 cut(s)	271, 459
Bst6I	CTCTTC	1 cut(s)	234
BstACI	GRCGYC	2 cut(s)	660, 1197
BstC8I	GCNNGC	2 cut(s)	697, 854
BstDEI	CTNAG	3 cut(s)	429, 858, 969
BstF5I	GGATG	3 cut(s)	301, 964, 1155
BstH2I	RGCGCY	2 cut(s)	389, 1200
BstHHI	GCGC	2 cut(s)	388, 1199
BstKTI	GATC	7 cut(s)	298, 406, 420, 898, 964, 1030, 1138
BstMAI	GTCTC	1 cut(s)	138
BstMBI	GATC	7 cut(s)	295, 403, 417, 895, 961, 1027, 1135
BstMWI	GCNNNNNNNGC	1 cut(s)	218
BstSFI	CTRYAG	1 cut(s)	598
BstSLI	GKGCMC	1 cut(s)	842
BstV1I	GCAGC	2 cut(s)	27, 30
BstV2I	GAAGAC	1 cut(s)	63
BstX2I	RGATCY	1 cut(s)	417
BstYI	RGATCY	1 cut(s)	417
BsuRI	GGCC	3 cut(s)	560, 856, 950
BtsCI	GGATG	3 cut(s)	301, 964, 1155
BtsI	GCAGTG	1 cut(s)	423
BtsIMutI	CAGTG	2 cut(s)	267, 423
BveI	ACCTGC	2 cut(s)	507, 605
Cac8I	GCNNGC	2 cut(s)	697, 854
CciI	TCATGA	1 cut(s)	1018
CfoI	GCGC	2 cut(s)	388, 1199
Cfr13I	GGNCC	2 cut(s)	442, 558
CseI	GACGC	1 cut(s)	668
Csp6I	GTAC	5 cut(s)	33, 175, 272, 603, 609
CspCI	CAANNNNNGTGG	2 cut(s)	663, 698
CviAII	CATG	3 cut(s)	1019, 1040, 1206
CviQI	GTAC	5 cut(s)	33, 175, 272, 603, 609
DdeI	CTNAG	3 cut(s)	429, 858, 969
DinI	GGCGCC	1 cut(s)	1198
DpnI	GATC	7 cut(s)	297, 405, 419, 897, 963, 1029, 1137
DpnII	GATC	7 cut(s)	295, 403, 417, 895, 961, 1027, 1135
Eam1104I	CTCTTC	1 cut(s)	234
EarI	CTCTTC	1 cut(s)	234
Eco147I	AGGCCT	1 cut(s)	856
Eco24I	GRGCYC	1 cut(s)	989
Eco47I	GGWCC	1 cut(s)	442
Eco57I	CTGAAG	1 cut(s)	924
Eco88I	CYCGRG	1 cut(s)	784
EcoT22I	ATGCAT	1 cut(s)	1174
EcoT38I	GRGCYC	1 cut(s)	989
EgeI	GGCGCC	1 cut(s)	1198
EheI	GGCGCC	1 cut(s)	1198
FaeI	CATG	3 cut(s)	1022, 1043, 1209
FaqI	GGGAC	3 cut(s)	455, 589, 1199
FatI	CATG	3 cut(s)	1018, 1039, 1205
FbaI	TGATCA	2 cut(s)	295, 895
Fnu4HI	GCNGC	3 cut(s)	16, 19, 389
FokI	GGATG	3 cut(s)	288, 951, 1142
FriOI	GRGCYC	1 cut(s)	989
Fsp4HI	GCNGC	3 cut(s)	16, 19, 389
FspBI	CTAG	6 cut(s)	279, 369, 503, 530, 606, 995
GlaI	GCGC	2 cut(s)	387, 1198
GluI	GCNGC	3 cut(s)	16, 19, 389
HaeII	RGCGCY	2 cut(s)	389, 1200
HaeIII	GGCC	3 cut(s)	560, 856, 950
HapII	CCGG	2 cut(s)	445, 1251
HgaI	GACGC	1 cut(s)	668
HhaI	GCGC	2 cut(s)	388, 1199
Hin1I	GRCGYC	2 cut(s)	660, 1197
Hin1II	CATG	3 cut(s)	1022, 1043, 1209
Hin6I	GCGC	2 cut(s)	386, 1197
HinP1I	GCGC	2 cut(s)	386, 1197
HindIII	AAGCTT	1 cut(s)	238
HinfI	GANTC	7 cut(s)	577, 665, 743, 749, 755, 782, 973
HpaII	CCGG	2 cut(s)	445, 1251
HphI	GGTGA	4 cut(s)	149, 535, 724, 890
Hpy166II	GTNNAC	2 cut(s)	124, 840
Hpy188I	TCNGA	6 cut(s)	582, 670, 748, 754, 861, 1140
Hpy188III	TCNNGA	5 cut(s)	369, 552, 968, 977, 1019
Hpy8I	GTNNAC	2 cut(s)	124, 840
HpyAV	CCTTC	5 cut(s)	117, 164, 368, 549, 1210
HpyCH4III	ACNGT	2 cut(s)	271, 459
HpyCH4IV	ACGT	1 cut(s)	690
HpyCH4V	TGCA	4 cut(s)	15, 600, 840, 1172
HpyF10VI	GCNNNNNNNGC	1 cut(s)	218
HpyF3I	CTNAG	3 cut(s)	429, 858, 969
HpySE526I	ACGT	1 cut(s)	690
Hsp92I	GRCGYC	2 cut(s)	660, 1197
Hsp92II	CATG	3 cut(s)	1022, 1043, 1209
HspAI	GCGC	2 cut(s)	386, 1197
KasI	GGCGCC	1 cut(s)	1196
KpnI	GGTACC	1 cut(s)	178
Ksp22I	TGATCA	2 cut(s)	295, 895
Kzo9I	GATC	7 cut(s)	295, 403, 417, 895, 961, 1027, 1135
LmnI	GCTCC	2 cut(s)	849, 992
Lsp1109I	GCAGC	2 cut(s)	27, 30
LweI	GCATC	1 cut(s)	1245
MaeI	CTAG	6 cut(s)	279, 369, 503, 530, 606, 995
MaeII	ACGT	1 cut(s)	690
MalI	GATC	7 cut(s)	297, 405, 419, 897, 963, 1029, 1137
MboI	GATC	7 cut(s)	295, 403, 417, 895, 961, 1027, 1135
MboII	GAAGA	9 cut(s)	63, 66, 221, 357, 386, 409, 412, 739, 930
MfeI	CAATTG	1 cut(s)	872
MflI	RGATCY	1 cut(s)	417
MhlI	GDGCHC	2 cut(s)	842, 989
Mly113I	GGCGCC	1 cut(s)	1197
MlyI	GAGTC	2 cut(s)	571, 776
MmeI	TCCRAC	1 cut(s)	1170
Mph1103I	ATGCAT	1 cut(s)	1174
MroXI	GAANNNNTTC	2 cut(s)	537, 881
MseI	TTAA	5 cut(s)	27, 215, 330, 833, 1258
MslI	CAYNNNNRTG	2 cut(s)	207, 1017
MspI	CCGG	2 cut(s)	445, 1251
MunI	CAATTG	1 cut(s)	872
MwoI	GCNNNNNNNGC	1 cut(s)	218
NarI	GGCGCC	1 cut(s)	1197
NdeII	GATC	7 cut(s)	295, 403, 417, 895, 961, 1027, 1135
NlaIII	CATG	3 cut(s)	1022, 1043, 1209
NlaIV	GGNNCC	6 cut(s)	176, 222, 325, 443, 988, 1198
NsiI	ATGCAT	1 cut(s)	1174
PaeR7I	CTCGAG	1 cut(s)	784
PagI	TCATGA	1 cut(s)	1018
PceI	AGGCCT	1 cut(s)	856
PcsI	WCGNNNNNNNCGW	2 cut(s)	660, 782
PdmI	GAANNNNTTC	2 cut(s)	537, 881
PfeI	GAWTC	5 cut(s)	665, 743, 749, 755, 973
PkrI	GCNGC	3 cut(s)	17, 20, 390
PleI	GAGTC	2 cut(s)	571, 776
PluTI	GGCGCC	1 cut(s)	1200
PpsI	GAGTC	2 cut(s)	571, 776
PshBI	ATTAAT	2 cut(s)	27, 833
PsiI	TTATAA	1 cut(s)	1092
PspN4I	GGNNCC	6 cut(s)	176, 222, 325, 443, 988, 1198
PspPI	GGNCC	2 cut(s)	442, 558
PspXI	VCTCGAGB	1 cut(s)	784
PsrI	GAACNNNNNNTAC	2 cut(s)	601, 633
PstI	CTGCAG	1 cut(s)	602
PsuI	RGATCY	1 cut(s)	417
RsaI	GTAC	5 cut(s)	34, 176, 273, 604, 610
RsaNI	GTAC	5 cut(s)	33, 175, 272, 603, 609
RseI	CAYNNNNRTG	2 cut(s)	207, 1017
SaqAI	TTAA	5 cut(s)	27, 215, 330, 833, 1258
SatI	GCNGC	3 cut(s)	16, 19, 389
Sau3AI	GATC	7 cut(s)	295, 403, 417, 895, 961, 1027, 1135
Sau96I	GGNCC	2 cut(s)	442, 558
ScaI	AGTACT	3 cut(s)	34, 604, 610
SchI	GAGTC	2 cut(s)	571, 776
SduI	GDGCHC	2 cut(s)	842, 989
SfaNI	GCATC	1 cut(s)	1245
SfcI	CTRYAG	1 cut(s)	598
SfoI	GGCGCC	1 cut(s)	1198
Sfr274I	CTCGAG	1 cut(s)	784
SinI	GGWCC	1 cut(s)	442
SlaI	CTCGAG	1 cut(s)	784
SmiMI	CAYNNNNRTG	2 cut(s)	207, 1017
SmlI	CTYRAG	2 cut(s)	436, 784
SmoI	CTYRAG	2 cut(s)	436, 784
SpeI	ACTAGT	1 cut(s)	605
SseBI	AGGCCT	1 cut(s)	856
SsiI	CCGC	1 cut(s)	389
SspDI	GGCGCC	1 cut(s)	1196
SspI	AATATT	4 cut(s)	25, 166, 343, 955
SspMI	CTAG	6 cut(s)	279, 369, 503, 530, 606, 995
StuI	AGGCCT	1 cut(s)	856
TaaI	ACNGT	2 cut(s)	271, 459
TaiI	ACGT	1 cut(s)	693
TaqI	TCGA	2 cut(s)	635, 785
TatI	WGTACW	3 cut(s)	32, 602, 608
TauI	GCSGC	1 cut(s)	391
TfiI	GAWTC	5 cut(s)	665, 743, 749, 755, 973
Tru1I	TTAA	5 cut(s)	27, 215, 330, 833, 1258
Tru9I	TTAA	5 cut(s)	27, 215, 330, 833, 1258
TscAI	CASTG	2 cut(s)	274, 430
TseI	GCWGC	2 cut(s)	15, 18
TspDTI	ATGAA	9 cut(s)	191, 249, 350, 410, 740, 752, 1028, 1062, 1208
TspRI	CASTG	2 cut(s)	274, 430
VneI	GTGCAC	1 cut(s)	838
VpaK11BI	GGWCC	1 cut(s)	442
VspI	ATTAAT	2 cut(s)	27, 833
XbaI	TCTAGA	1 cut(s)	368
XcmI	CCANNNNNNNNNTGG	1 cut(s)	317
XhoI	CTCGAG	1 cut(s)	784
XmnI	GAANNNNTTC	2 cut(s)	537, 881
XspI	CTAG	6 cut(s)	279, 369, 503, 530, 606, 995
ZrmI	AGTACT	3 cut(s)	34, 604, 610
Zsp2I	ATGCAT	1 cut(s)	1174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.