RLG00000021385

Protein of unknown function (DUF2854)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0005284
Physical Location & Seq
Forward (+)
74742708 .. 74744637
1930 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021385

Sequence Viewer

Length: 1140 bp
ATGTACTCTTCCACCAATAATAACATTAGTAGTAGTGGTAGTGTATTTCCTTTCCCACCTTCTAACTTTCCCTTTTCCTCCTCTTCTTCTTCTCATAACAGCCACCACCCTCTTCTTCCTCAAGAAAATACAAACTGTGGAGGCATTTTTGGCCTACACCATGATCAATTTTCCCTATTAAACAATTGTTTGCTGTCACACGGACCGGAAAGTACTATGGTCAATCTCGGAGGAGCTTCATCAAACGCGATTGTACCATCATCTGGGGACTACCAGCAGCATTATGGTTATGGTAATAATATAACTCATCCCTATTTTGTTTCTAAGGAGGTGAGAGTACCGGTGGTTGCTGTGAAGAAAGACCGGCACAGCAAGATCTTCACTTCTCAGGGCTTGAGGGATCGGAGGGTAAGACTCTCCATCAATGTTGCCCGTGAGTTCTTCGATCTCCAAGACTTGCTAGGGTTTGACAAAGCCAGCAAAACCTTAGAGTGGCTGCTCAGCAATTCTAGAAAGGCCATTAAAGACCTAGAAAAGAGCAAGTGCAATAACAGTACTAGTGTATCATCTTCTAGTACTTCGAACAGTGATGATGTTTTGGACATAAACAACGAGGCGTCCGATGACAAGAAGAGGAAGATGAAGGAGGCTGCTGCTTTCATGGCCAGAGCATCGCGGGCAAAGGCTAGAGCAAGAGCAAGACAAAGAACAAGAGAGAAGATGTGCAGTACTAGTACGAGGAGTGCTCAGATCTGTAGCCATTGGAGCTTGTTCAATGAGCTTGAACCTGCAGATATGAATAAAGAACCGGGCAGTACATTCCTATCTAATTGTCAAGCTGAATATCATGAATCTGTTGCGCTCAAAAGAAAGCTGAAGGCGCCGTCAGTTTCCAATTATCATGATCGAAGCCTTGAATTGAACCCCAAAAGCACGGAACCTAGTTCAAATTGCTGCAGCCACATTAATATCCAATTTCCGAATGCAATATCTCAAAATTATTGGGACATCAGCGGCAGTGTCTTCACATGCCCTAGCATTTGTGCCATTACCACCAACATGAATCTTAATTCTACAGCTGATGATCAAGGTGGTGATATCCATGACAATACACATATAAAGCTGTTCCCTGTTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2854 UMP1

Protein Analysis

380

Amino Acids

41.99

Weight (kDa)

8.73

Isoelectric Point (pI)

49.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 118 - 243 3.4e-36 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 796
AccB1I GGYRCC 1 cut(s) 880
AccB7I CCANNNNNTGG 1 cut(s) 263
AccII CGCG 2 cut(s) 248, 676
AciI CCGC 2 cut(s) 676, 1014
AclWI GGATC 1 cut(s) 408
AcoI YGGCCR 1 cut(s) 663
AcuI CTGAAG 1 cut(s) 896
AcyI GRCGYC 2 cut(s) 617, 881
AfaI GTAC 9 cut(s) 5, 214, 255, 339, 556, 577, 730, 736, 817
AfiI CCNNNNNNNGG 2 cut(s) 263, 492
AgeI ACCGGT 1 cut(s) 340
AgsI TTSAA 5 cut(s) 775, 785, 917, 922, 948
AhlI ACTAGT 2 cut(s) 557, 731
AluBI AGCT 7 cut(s) 236, 768, 781, 839, 874, 1079, 1123
AluI AGCT 7 cut(s) 236, 768, 781, 839, 874, 1079, 1123
Alw21I GWGCWC 1 cut(s) 748
AlwI GGATC 1 cut(s) 408
AoxI GGCC 3 cut(s) 151, 516, 663
ApeKI GCWGC 6 cut(s) 277, 496, 650, 653, 954, 957
AseI ATTAAT 1 cut(s) 966
AsiGI ACCGGT 1 cut(s) 340
AspLEI GCGC 2 cut(s) 862, 883
AspS9I GGNCC 1 cut(s) 203
AsuC2I CCSGG 1 cut(s) 810
AsuHPI GGTGA 2 cut(s) 343, 1106
AsuII TTCGAA 1 cut(s) 581
AvaII GGWCC 1 cut(s) 203
BaeI ACNNNNGTAYC 2 cut(s) 546, 579
BalI TGGCCA 1 cut(s) 665
BanI GGYRCC 1 cut(s) 880
BbsI GAAGAC 1 cut(s) 1015
Bbv12I GWGCWC 1 cut(s) 748
BbvI GCAGC 6 cut(s) 289, 483, 637, 640, 941, 969
BccI CCATC 2 cut(s) 265, 428
BceAI ACGGC 1 cut(s) 868
BclI TGATCA 2 cut(s) 163, 1084
BcnI CCSGG 1 cut(s) 810
BcuI ACTAGT 2 cut(s) 557, 731
BfaI CTAG 9 cut(s) 461, 510, 530, 558, 573, 687, 732, 942, 1035
BfmI CTRYAG 4 cut(s) 754, 789, 955, 1074
BfoI RGCGCY 1 cut(s) 884
BfuAI ACCTGC 1 cut(s) 796
BglII AGATCT 2 cut(s) 375, 750
BisI GCNGC 7 cut(s) 278, 497, 651, 654, 955, 958, 1015
BlpI GCTNAGC 1 cut(s) 500
BlsI GCNGC 7 cut(s) 279, 498, 652, 655, 956, 959, 1016
BmcAI AGTACT 4 cut(s) 214, 556, 577, 730
Bme1390I CCNGG 1 cut(s) 810
Bme18I GGWCC 1 cut(s) 203
BmgT120I GGNCC 1 cut(s) 203
BmiI GGNNCC 2 cut(s) 882, 939
BmrFI CCNGG 1 cut(s) 810
BmsI GCATC 1 cut(s) 680
BpiI GAAGAC 1 cut(s) 1015
BplI GAGNNNNNCTC 2 cut(s) 730, 762
Bpu1102I GCTNAGC 1 cut(s) 500
Bpu14I TTCGAA 1 cut(s) 581
BpuEI CTTGAG 2 cut(s) 105, 415
BpuMI CCSGG 1 cut(s) 810
BsaHI GRCGYC 2 cut(s) 617, 881
BsaWI WCCGGW 2 cut(s) 205, 340
Bsc4I CCNNNNNNNGG 2 cut(s) 263, 492
Bse118I RCCGGY 2 cut(s) 340, 363
BseGI GGATG 1 cut(s) 307
BseLI CCNNNNNNNGG 2 cut(s) 263, 492
BseMII CTCAG 3 cut(s) 401, 514, 761
BseRI GAGGAG 3 cut(s) 70, 246, 754
BseXI GCAGC 6 cut(s) 289, 483, 637, 640, 941, 969
BsgI GTGCAG 1 cut(s) 745
Bsh1236I CGCG 2 cut(s) 248, 676
BshFI GGCC 3 cut(s) 153, 518, 665
BshNI GGYRCC 1 cut(s) 880
BshTI ACCGGT 1 cut(s) 340
BsiHKAI GWGCWC 1 cut(s) 748
BsiSI CCGG 4 cut(s) 206, 341, 364, 809
BslFI GGGAC 2 cut(s) 281, 1019
BslI CCNNNNNNNGG 2 cut(s) 263, 492
BsmFI GGGAC 2 cut(s) 281, 1019
BsmI GAATGC 1 cut(s) 988
BsnI GGCC 3 cut(s) 153, 518, 665
Bsp119I TTCGAA 1 cut(s) 581
Bsp1286I GDGCHC 1 cut(s) 748
Bsp143I GATC 7 cut(s) 163, 375, 400, 445, 750, 904, 1084
Bsp1720I GCTNAGC 1 cut(s) 500
BspACI CCGC 2 cut(s) 676, 1014
BspANI GGCC 3 cut(s) 153, 518, 665
BspCNI CTCAG 3 cut(s) 400, 513, 760
BspFNI CGCG 2 cut(s) 248, 676
BspHI TCATGA 2 cut(s) 847, 901
BspLI GGNNCC 2 cut(s) 882, 939
BspMAI CTGCAG 2 cut(s) 793, 959
BspMI ACCTGC 1 cut(s) 796
BspPI GGATC 1 cut(s) 408
BspT104I TTCGAA 1 cut(s) 581
BspT107I GGYRCC 1 cut(s) 880
BsrFI RCCGGY 2 cut(s) 340, 363
BssAI RCCGGY 2 cut(s) 340, 363
BssMI GATC 7 cut(s) 163, 375, 400, 445, 750, 904, 1084
BssNI GRCGYC 2 cut(s) 617, 881
Bst4CI ACNGT 3 cut(s) 137, 554, 587
Bst6I CTCTTC 4 cut(s) 13, 88, 117, 626
BstACI GRCGYC 2 cut(s) 617, 881
BstBI TTCGAA 1 cut(s) 581
BstC8I GCNNGC 2 cut(s) 478, 678
BstDEI CTNAG 5 cut(s) 324, 387, 487, 500, 747
BstF5I GGATG 1 cut(s) 307
BstFNI CGCG 2 cut(s) 248, 676
BstH2I RGCGCY 1 cut(s) 884
BstHHI GCGC 2 cut(s) 862, 883
BstKTI GATC 7 cut(s) 166, 378, 403, 448, 753, 907, 1087
BstMBI GATC 7 cut(s) 163, 375, 400, 445, 750, 904, 1084
BstMWI GCNNNNNNNGC 5 cut(s) 150, 662, 677, 765, 880
BstNSI RCATGY 1 cut(s) 1032
BstSCI CCNGG 1 cut(s) 808
BstSFI CTRYAG 4 cut(s) 754, 789, 955, 1074
BstUI CGCG 2 cut(s) 248, 676
BstV1I GCAGC 6 cut(s) 289, 483, 637, 640, 941, 969
BstV2I GAAGAC 1 cut(s) 1015
BstX2I RGATCY 2 cut(s) 375, 750
BstYI RGATCY 2 cut(s) 375, 750
BsuRI GGCC 3 cut(s) 153, 518, 665
BtgZI GCGATG 1 cut(s) 657
BtsCI GGATG 1 cut(s) 307
BtsI GCAGTG 1 cut(s) 1024
BtsIMutI CAGTG 2 cut(s) 592, 1024
BveI ACCTGC 1 cut(s) 796
Cac8I GCNNGC 2 cut(s) 478, 678
CciI TCATGA 2 cut(s) 847, 901
CfoI GCGC 2 cut(s) 862, 883
Cfr10I RCCGGY 2 cut(s) 340, 363
Cfr13I GGNCC 1 cut(s) 203
CpoI CGGWCCG 1 cut(s) 203
CseI GACGC 1 cut(s) 606
Csp6I GTAC 9 cut(s) 4, 213, 254, 338, 555, 576, 729, 735, 816
CspAI ACCGGT 1 cut(s) 340
CspI CGGWCCG 1 cut(s) 203
CviAII CATG 7 cut(s) 161, 661, 848, 902, 1029, 1060, 1103
CviQI GTAC 9 cut(s) 4, 213, 254, 338, 555, 576, 729, 735, 816
DdeI CTNAG 5 cut(s) 324, 387, 487, 500, 747
DinI GGCGCC 1 cut(s) 882
DpnI GATC 7 cut(s) 165, 377, 402, 447, 752, 906, 1086
DpnII GATC 7 cut(s) 163, 375, 400, 445, 750, 904, 1084
EaeI YGGCCR 1 cut(s) 663
Eam1104I CTCTTC 4 cut(s) 13, 88, 117, 626
EarI CTCTTC 4 cut(s) 13, 88, 117, 626
Eco32I GATATC 1 cut(s) 1099
Eco47I GGWCC 1 cut(s) 203
Eco57I CTGAAG 1 cut(s) 896
EcoRV GATATC 1 cut(s) 1099
EgeI GGCGCC 1 cut(s) 882
EheI GGCGCC 1 cut(s) 882
FaeI CATG 7 cut(s) 164, 664, 851, 905, 1032, 1063, 1106
FaqI GGGAC 2 cut(s) 281, 1019
FatI CATG 7 cut(s) 160, 660, 847, 901, 1028, 1059, 1102
FauI CCCGC 1 cut(s) 669
FbaI TGATCA 2 cut(s) 163, 1084
Fnu4HI GCNGC 7 cut(s) 278, 497, 651, 654, 955, 958, 1015
FokI GGATG 1 cut(s) 294
Fsp4HI GCNGC 7 cut(s) 278, 497, 651, 654, 955, 958, 1015
FspBI CTAG 9 cut(s) 461, 510, 530, 558, 573, 687, 732, 942, 1035
GlaI GCGC 2 cut(s) 861, 882
GluI GCNGC 7 cut(s) 278, 497, 651, 654, 955, 958, 1015
HaeII RGCGCY 1 cut(s) 884
HaeIII GGCC 3 cut(s) 153, 518, 665
HapII CCGG 4 cut(s) 206, 341, 364, 809
HgaI GACGC 1 cut(s) 606
HhaI GCGC 2 cut(s) 862, 883
Hin1I GRCGYC 2 cut(s) 617, 881
Hin1II CATG 7 cut(s) 164, 664, 851, 905, 1032, 1063, 1106
Hin6I GCGC 2 cut(s) 860, 881
HinP1I GCGC 2 cut(s) 860, 881
HinfI GANTC 3 cut(s) 414, 851, 1063
HpaII CCGG 4 cut(s) 206, 341, 364, 809
HphI GGTGA 2 cut(s) 343, 1106
Hpy188I TCNGA 5 cut(s) 230, 405, 622, 750, 981
Hpy188III TCNNGA 4 cut(s) 122, 510, 848, 902
HpyAV CCTTC 3 cut(s) 69, 637, 871
HpyCH4III ACNGT 3 cut(s) 137, 554, 587
HpyCH4V TGCA 5 cut(s) 546, 726, 791, 957, 986
HpyF10VI GCNNNNNNNGC 5 cut(s) 150, 662, 677, 765, 880
HpyF3I CTNAG 5 cut(s) 324, 387, 487, 500, 747
Hsp92I GRCGYC 2 cut(s) 617, 881
Hsp92II CATG 7 cut(s) 164, 664, 851, 905, 1032, 1063, 1106
HspAI GCGC 2 cut(s) 860, 881
KasI GGCGCC 1 cut(s) 880
Ksp22I TGATCA 2 cut(s) 163, 1084
Kzo9I GATC 7 cut(s) 163, 375, 400, 445, 750, 904, 1084
LmnI GCTCC 2 cut(s) 233, 765
Lsp1109I GCAGC 6 cut(s) 289, 483, 637, 640, 941, 969
LweI GCATC 1 cut(s) 680
MaeI CTAG 9 cut(s) 461, 510, 530, 558, 573, 687, 732, 942, 1035
MaeIII GTNAC 1 cut(s) 195
MalI GATC 7 cut(s) 165, 377, 402, 447, 752, 906, 1086
MboI GATC 7 cut(s) 163, 375, 400, 445, 750, 904, 1084
MfeI CAATTG 1 cut(s) 184
MflI RGATCY 2 cut(s) 375, 750
MhlI GDGCHC 1 cut(s) 748
MlsI TGGCCA 1 cut(s) 665
MluNI TGGCCA 1 cut(s) 665
Mly113I GGCGCC 1 cut(s) 881
MlyI GAGTC 1 cut(s) 408
Mox20I TGGCCA 1 cut(s) 665
MscI TGGCCA 1 cut(s) 665
MseI TTAA 4 cut(s) 179, 522, 966, 1068
MslI CAYNNNNRTG 1 cut(s) 1058
Msp20I TGGCCA 1 cut(s) 665
MspA1I CMGCKG 2 cut(s) 1014, 1079
MspI CCGG 4 cut(s) 206, 341, 364, 809
MspR9I CCNGG 1 cut(s) 810
MunI CAATTG 1 cut(s) 184
Mva1269I GAATGC 1 cut(s) 988
MvnI CGCG 2 cut(s) 248, 676
MwoI GCNNNNNNNGC 5 cut(s) 150, 662, 677, 765, 880
NarI GGCGCC 1 cut(s) 881
NciI CCSGG 1 cut(s) 810
NdeII GATC 7 cut(s) 163, 375, 400, 445, 750, 904, 1084
NlaIII CATG 7 cut(s) 164, 664, 851, 905, 1032, 1063, 1106
NlaIV GGNNCC 2 cut(s) 882, 939
NmuCI GTSAC 1 cut(s) 195
NspI RCATGY 1 cut(s) 1032
NspV TTCGAA 1 cut(s) 581
PagI TCATGA 2 cut(s) 847, 901
PcsI WCGNNNNNNNCGW 1 cut(s) 618
PctI GAATGC 1 cut(s) 988
PfeI GAWTC 2 cut(s) 851, 1063
PflMI CCANNNNNTGG 1 cut(s) 263
PinAI ACCGGT 1 cut(s) 340
PkrI GCNGC 7 cut(s) 279, 498, 652, 655, 956, 959, 1016
PleI GAGTC 1 cut(s) 408
PluTI GGCGCC 1 cut(s) 884
PpsI GAGTC 1 cut(s) 408
PshBI ATTAAT 1 cut(s) 966
PspN4I GGNNCC 2 cut(s) 882, 939
PspPI GGNCC 1 cut(s) 203
PstI CTGCAG 2 cut(s) 793, 959
PsuI RGATCY 2 cut(s) 375, 750
PvuII CAGCTG 1 cut(s) 1079
RsaI GTAC 9 cut(s) 5, 214, 255, 339, 556, 577, 730, 736, 817
RsaNI GTAC 9 cut(s) 4, 213, 254, 338, 555, 576, 729, 735, 816
RseI CAYNNNNRTG 1 cut(s) 1058
Rsr2I CGGWCCG 1 cut(s) 203
RsrII CGGWCCG 1 cut(s) 203
SaqAI TTAA 4 cut(s) 179, 522, 966, 1068
SatI GCNGC 7 cut(s) 278, 497, 651, 654, 955, 958, 1015
Sau3AI GATC 7 cut(s) 163, 375, 400, 445, 750, 904, 1084
Sau96I GGNCC 1 cut(s) 203
ScaI AGTACT 4 cut(s) 214, 556, 577, 730
SchI GAGTC 1 cut(s) 408
ScrFI CCNGG 1 cut(s) 810
SduI GDGCHC 1 cut(s) 748
SfaNI GCATC 1 cut(s) 680
SfcI CTRYAG 4 cut(s) 754, 789, 955, 1074
SfoI GGCGCC 1 cut(s) 882
SfuI TTCGAA 1 cut(s) 581
SinI GGWCC 1 cut(s) 203
SmiMI CAYNNNNRTG 1 cut(s) 1058
SmlI CTYRAG 2 cut(s) 120, 394
SmoI CTYRAG 2 cut(s) 120, 394
SpeI ACTAGT 2 cut(s) 557, 731
SsiI CCGC 2 cut(s) 676, 1014
SspDI GGCGCC 1 cut(s) 880
SspMI CTAG 9 cut(s) 461, 510, 530, 558, 573, 687, 732, 942, 1035
StyD4I CCNGG 1 cut(s) 808
TaaI ACNGT 3 cut(s) 137, 554, 587
TaqI TCGA 3 cut(s) 444, 581, 907
TatI WGTACW 6 cut(s) 3, 212, 554, 575, 728, 815
TauI GCSGC 1 cut(s) 1017
TfiI GAWTC 2 cut(s) 851, 1063
Tru1I TTAA 4 cut(s) 179, 522, 966, 1068
Tru9I TTAA 4 cut(s) 179, 522, 966, 1068
TscAI CASTG 2 cut(s) 592, 1024
TseFI GTSAC 1 cut(s) 195
TseI GCWGC 6 cut(s) 277, 496, 650, 653, 954, 957
Tsp45I GTSAC 1 cut(s) 195
TspDTI ATGAA 6 cut(s) 228, 649, 656, 812, 864, 1076
TspGWI ACGGA 2 cut(s) 216, 950
TspRI CASTG 2 cut(s) 592, 1024
Van91I CCANNNNNTGG 1 cut(s) 263
VpaK11BI GGWCC 1 cut(s) 203
VspI ATTAAT 1 cut(s) 966
XbaI TCTAGA 1 cut(s) 509
XceI RCATGY 1 cut(s) 1032
XcmI CCANNNNNNNNNTGG 1 cut(s) 281
XspI CTAG 9 cut(s) 461, 510, 530, 558, 573, 687, 732, 942, 1035
ZrmI AGTACT 4 cut(s) 214, 556, 577, 730
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.