Rh2CG550200

Protein of unknown function (DUF2854)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0005284
Physical Location & Seq
Forward (+)
73048749 .. 73052707
3959 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG550200.1

Sequence Viewer

Length: 1089 bp
ATGTACTCTTCCATCAATAATAACATTAGTAGTAGTGGTACTGTATTTCCTTTCCCACCTTATAACTTTCCCTTTTCCTCCTCTCCTTCCTCTCATAACAGCCACCACCCTCTTCTTCCTCAAGAAAATACAACCCGTGGAGGCATTTTTGGCCCACACCACGATCAATTTTCCCTATTAAACAATTGTTTGCTGTCACCCGGACCGGAAAGTACTATGGTCAATCTCGGAGGAGCTTCATCAAACGCGATCGTACGATTATCTGGAGACTACCAGCAGCATTATGGTTATGGTAATAATATTACTCATCCCTATTTTGTTTCTAAGGAGGTGAGAGTACCGGTGGTTGCTGTGAAGAAAGACCGGCACAGCAAGATCTTCACTTCTCAGGGCTTGAGGGATCGGAGGGTAAGACTCTCCATCAATGTTGCCCGTGAGTTCTTCGATCTCCAAGACTTGCTAGGGTTTGACAAAGCCAGCAAAACCTTAGAGTGGCTGCTCAGCAATTCCAGAAATGCCATCAAAGACCTAGAAAAGAGCAAGTGCAATAACAGTACTAGTATATCATCTTCTAGTACTTCGGACTGTGATGATGTTTTGGACAAAAACAACGAGGCGTCCGATGACAAGAGGAGGAGGAAGATGAAGGAGGCTGCTGCTATAATGGCCAGAGCATCGCGGGCAAAGGCTAGAGCAAGAGCAAGAGAAAGAACAAGAGAGAAGATGTGCGGTACTAGTACGAGGAGCCATCAGATCTGTAGCCAGTTGAGCTTGTTCAATGAGCTTGAACCTGCAGATATGAATAAAGAACCGGGTAGTACCCTCCTATCTAATTGTCAAGCTGAATATCATGAATCTGTTGCGCTCAAAAGAAAGCTGAAGGCGCCGTCAGTTTCCAATTATCACGATCGAAGCCTTGAATTGAACCCCAAAAGCACGGAACCTAGTTCAAATTGCGGCAGCCACATTAATATCCAATTTCCGAATGCAATATCTCAAAATTATTGGGACATCGGCGGCAGTGTCTTCACATGCCCTAGCATTTGTGCCATTACCACCAACATGAATCTTAATTCTACGGGGTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2854 UMP1

Protein Analysis

362

Amino Acids

40.12

Weight (kDa)

9.08

Isoelectric Point (pI)

52.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 118 - 243 1.3e-37 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 63
Acc36I ACCTGC 1 cut(s) 799
AccB1I GGYRCC 1 cut(s) 883
AccII CGCG 2 cut(s) 248, 679
AciI CCGC 4 cut(s) 679, 729, 957, 1017
AclWI GGATC 1 cut(s) 408
AcoI YGGCCR 1 cut(s) 666
AcuI CTGAAG 1 cut(s) 899
AcyI GRCGYC 2 cut(s) 617, 884
AfiI CCNNNNNNNGG 1 cut(s) 492
AgeI ACCGGT 1 cut(s) 340
AgsI TTSAA 5 cut(s) 778, 788, 920, 925, 951
AhlI ACTAGT 2 cut(s) 557, 734
AluBI AGCT 5 cut(s) 236, 771, 784, 842, 877
AluI AGCT 5 cut(s) 236, 771, 784, 842, 877
Alw26I GTCTC 1 cut(s) 261
AlwI GGATC 1 cut(s) 408
AoxI GGCC 2 cut(s) 151, 666
ApeKI GCWGC 5 cut(s) 277, 496, 653, 656, 960
AseI ATTAAT 1 cut(s) 969
AsiGI ACCGGT 1 cut(s) 340
AspLEI GCGC 2 cut(s) 865, 886
AspS9I GGNCC 3 cut(s) 152, 203, 1083
AsuC2I CCSGG 2 cut(s) 201, 813
AsuHPI GGTGA 2 cut(s) 189, 343
AvaII GGWCC 2 cut(s) 203, 1083
BalI TGGCCA 1 cut(s) 668
BanI GGYRCC 1 cut(s) 883
BarI GAAGNNNNNNTAC 2 cut(s) 553, 585
BbsI GAAGAC 1 cut(s) 1018
BbvI GCAGC 5 cut(s) 289, 483, 640, 643, 972
BccI CCATC 4 cut(s) 20, 428, 527, 756
BceAI ACGGC 1 cut(s) 871
BcnI CCSGG 2 cut(s) 201, 813
BcoDI GTCTC 1 cut(s) 261
BcuI ACTAGT 2 cut(s) 557, 734
BfaI CTAG 8 cut(s) 461, 530, 558, 573, 690, 735, 945, 1038
BfmI CTRYAG 2 cut(s) 757, 792
BfoI RGCGCY 1 cut(s) 887
BfuAI ACCTGC 1 cut(s) 799
BglII AGATCT 2 cut(s) 375, 753
BisI GCNGC 7 cut(s) 278, 497, 654, 657, 958, 961, 1018
BlpI GCTNAGC 1 cut(s) 500
BlsI GCNGC 7 cut(s) 279, 498, 655, 658, 959, 962, 1019
BmcAI AGTACT 3 cut(s) 214, 556, 577
Bme1390I CCNGG 2 cut(s) 201, 813
Bme18I GGWCC 2 cut(s) 203, 1083
BmgT120I GGNCC 3 cut(s) 152, 203, 1083
BmiI GGNNCC 4 cut(s) 746, 885, 942, 1084
BmrFI CCNGG 2 cut(s) 201, 813
BmsI GCATC 1 cut(s) 683
BpiI GAAGAC 1 cut(s) 1018
BpmI CTGGAG 1 cut(s) 285
Bpu1102I GCTNAGC 1 cut(s) 500
BpuEI CTTGAG 2 cut(s) 105, 415
BpuMI CCSGG 2 cut(s) 201, 813
BsaHI GRCGYC 2 cut(s) 617, 884
BsaJI CCNNGG 1 cut(s) 136
BsaWI WCCGGW 2 cut(s) 205, 340
Bsc4I CCNNNNNNNGG 1 cut(s) 492
Bse118I RCCGGY 2 cut(s) 340, 363
Bse1I ACTGG 1 cut(s) 763
BseDI CCNNGG 1 cut(s) 136
BseGI GGATG 1 cut(s) 307
BseLI CCNNNNNNNGG 1 cut(s) 492
BseMII CTCAG 2 cut(s) 401, 514
BseNI ACTGG 1 cut(s) 763
BseRI GAGGAG 5 cut(s) 70, 246, 646, 649, 757
BseXI GCAGC 5 cut(s) 289, 483, 640, 643, 972
Bsh1236I CGCG 2 cut(s) 248, 679
Bsh1285I CGRYCG 2 cut(s) 252, 910
BshFI GGCC 2 cut(s) 153, 668
BshNI GGYRCC 1 cut(s) 883
BshTI ACCGGT 1 cut(s) 340
BsiEI CGRYCG 2 cut(s) 252, 910
BsiSI CCGG 5 cut(s) 201, 206, 341, 364, 812
BsiWI CGTACG 1 cut(s) 253
BslFI GGGAC 1 cut(s) 1022
BslI CCNNNNNNNGG 1 cut(s) 492
BsmAI GTCTC 1 cut(s) 261
BsmFI GGGAC 1 cut(s) 1022
BsmI GAATGC 1 cut(s) 991
BsnI GGCC 2 cut(s) 153, 668
Bsp143I GATC 7 cut(s) 163, 249, 375, 400, 445, 753, 907
Bsp1720I GCTNAGC 1 cut(s) 500
BspACI CCGC 4 cut(s) 679, 729, 957, 1017
BspANI GGCC 2 cut(s) 153, 668
BspCNI CTCAG 2 cut(s) 400, 513
BspFNI CGCG 2 cut(s) 248, 679
BspHI TCATGA 1 cut(s) 850
BspLI GGNNCC 4 cut(s) 746, 885, 942, 1084
BspMAI CTGCAG 1 cut(s) 796
BspMI ACCTGC 1 cut(s) 799
BspPI GGATC 1 cut(s) 408
BspT107I GGYRCC 1 cut(s) 883
BsrFI RCCGGY 2 cut(s) 340, 363
BsrI ACTGG 1 cut(s) 763
BssAI RCCGGY 2 cut(s) 340, 363
BssECI CCNNGG 1 cut(s) 136
BssMI GATC 7 cut(s) 163, 249, 375, 400, 445, 753, 907
BssNI GRCGYC 2 cut(s) 617, 884
Bst4CI ACNGT 3 cut(s) 43, 554, 587
Bst6I CTCTTC 2 cut(s) 13, 117
BstACI GRCGYC 2 cut(s) 617, 884
BstC8I GCNNGC 2 cut(s) 478, 681
BstDEI CTNAG 4 cut(s) 324, 387, 487, 500
BstDSI CCRYGG 1 cut(s) 136
BstF5I GGATG 1 cut(s) 307
BstFNI CGCG 2 cut(s) 248, 679
BstH2I RGCGCY 1 cut(s) 887
BstHHI GCGC 2 cut(s) 865, 886
BstKTI GATC 7 cut(s) 166, 252, 378, 403, 448, 756, 910
BstMAI GTCTC 1 cut(s) 261
BstMBI GATC 7 cut(s) 163, 249, 375, 400, 445, 753, 907
BstMCI CGRYCG 2 cut(s) 252, 910
BstMWI GCNNNNNNNGC 5 cut(s) 150, 665, 680, 768, 883
BstNSI RCATGY 1 cut(s) 1035
BstSCI CCNGG 2 cut(s) 199, 811
BstSFI CTRYAG 2 cut(s) 757, 792
BstUI CGCG 2 cut(s) 248, 679
BstV1I GCAGC 5 cut(s) 289, 483, 640, 643, 972
BstV2I GAAGAC 1 cut(s) 1018
BstX2I RGATCY 2 cut(s) 375, 753
BstYI RGATCY 2 cut(s) 375, 753
BsuRI GGCC 2 cut(s) 153, 668
BtgI CCRYGG 1 cut(s) 136
BtgZI GCGATG 1 cut(s) 660
BtsCI GGATG 1 cut(s) 307
BtsI GCAGTG 1 cut(s) 1027
BtsIMutI CAGTG 1 cut(s) 1027
BveI ACCTGC 1 cut(s) 799
Cac8I GCNNGC 2 cut(s) 478, 681
CciI TCATGA 1 cut(s) 850
CfoI GCGC 2 cut(s) 865, 886
Cfr10I RCCGGY 2 cut(s) 340, 363
Cfr13I GGNCC 3 cut(s) 152, 203, 1083
CpoI CGGWCCG 1 cut(s) 203
CseI GACGC 1 cut(s) 606
CspAI ACCGGT 1 cut(s) 340
CspI CGGWCCG 1 cut(s) 203
CviAII CATG 3 cut(s) 851, 1032, 1063
DdeI CTNAG 4 cut(s) 324, 387, 487, 500
DinI GGCGCC 1 cut(s) 885
DpnI GATC 7 cut(s) 165, 251, 377, 402, 447, 755, 909
DpnII GATC 7 cut(s) 163, 249, 375, 400, 445, 753, 907
EaeI YGGCCR 1 cut(s) 666
Eam1104I CTCTTC 2 cut(s) 13, 117
EarI CTCTTC 2 cut(s) 13, 117
Eco47I GGWCC 2 cut(s) 203, 1083
Eco57I CTGAAG 1 cut(s) 899
EcoO109I RGGNCCY 1 cut(s) 1083
EgeI GGCGCC 1 cut(s) 885
EheI GGCGCC 1 cut(s) 885
FaeI CATG 3 cut(s) 854, 1035, 1066
FaqI GGGAC 1 cut(s) 1022
FatI CATG 3 cut(s) 850, 1031, 1062
FauI CCCGC 1 cut(s) 672
Fnu4HI GCNGC 7 cut(s) 278, 497, 654, 657, 958, 961, 1018
FokI GGATG 1 cut(s) 294
Fsp4HI GCNGC 7 cut(s) 278, 497, 654, 657, 958, 961, 1018
FspBI CTAG 8 cut(s) 461, 530, 558, 573, 690, 735, 945, 1038
GlaI GCGC 2 cut(s) 864, 885
GluI GCNGC 7 cut(s) 278, 497, 654, 657, 958, 961, 1018
GsuI CTGGAG 1 cut(s) 285
HaeII RGCGCY 1 cut(s) 887
HaeIII GGCC 2 cut(s) 153, 668
HapII CCGG 5 cut(s) 201, 206, 341, 364, 812
HgaI GACGC 1 cut(s) 606
HhaI GCGC 2 cut(s) 865, 886
Hin1I GRCGYC 2 cut(s) 617, 884
Hin1II CATG 3 cut(s) 854, 1035, 1066
Hin6I GCGC 2 cut(s) 863, 884
HinP1I GCGC 2 cut(s) 863, 884
HinfI GANTC 3 cut(s) 414, 854, 1066
HpaII CCGG 5 cut(s) 201, 206, 341, 364, 812
HphI GGTGA 2 cut(s) 189, 343
Hpy188I TCNGA 6 cut(s) 230, 405, 583, 622, 753, 984
Hpy188III TCNNGA 5 cut(s) 122, 264, 510, 851, 905
HpyAV CCTTC 3 cut(s) 96, 640, 874
HpyCH4III ACNGT 3 cut(s) 43, 554, 587
HpyCH4V TGCA 3 cut(s) 546, 794, 989
HpyF10VI GCNNNNNNNGC 5 cut(s) 150, 665, 680, 768, 883
HpyF3I CTNAG 4 cut(s) 324, 387, 487, 500
Hsp92I GRCGYC 2 cut(s) 617, 884
Hsp92II CATG 3 cut(s) 854, 1035, 1066
HspAI GCGC 2 cut(s) 863, 884
KasI GGCGCC 1 cut(s) 883
Kzo9I GATC 7 cut(s) 163, 249, 375, 400, 445, 753, 907
LmnI GCTCC 2 cut(s) 233, 744
Lsp1109I GCAGC 5 cut(s) 289, 483, 640, 643, 972
LweI GCATC 1 cut(s) 683
MaeI CTAG 8 cut(s) 461, 530, 558, 573, 690, 735, 945, 1038
MaeIII GTNAC 1 cut(s) 195
MalI GATC 7 cut(s) 165, 251, 377, 402, 447, 755, 909
MboI GATC 7 cut(s) 163, 249, 375, 400, 445, 753, 907
MboII GAAGA 9 cut(s) 104, 107, 367, 370, 433, 561, 652, 733, 1018
MfeI CAATTG 1 cut(s) 184
MflI RGATCY 2 cut(s) 375, 753
MlsI TGGCCA 1 cut(s) 668
MluNI TGGCCA 1 cut(s) 668
Mly113I GGCGCC 1 cut(s) 884
MlyI GAGTC 1 cut(s) 408
Mox20I TGGCCA 1 cut(s) 668
MscI TGGCCA 1 cut(s) 668
MseI TTAA 3 cut(s) 179, 969, 1071
MslI CAYNNNNRTG 1 cut(s) 1061
Msp20I TGGCCA 1 cut(s) 668
MspI CCGG 5 cut(s) 201, 206, 341, 364, 812
MspR9I CCNGG 2 cut(s) 201, 813
MunI CAATTG 1 cut(s) 184
Mva1269I GAATGC 1 cut(s) 991
MvnI CGCG 2 cut(s) 248, 679
MwoI GCNNNNNNNGC 5 cut(s) 150, 665, 680, 768, 883
NarI GGCGCC 1 cut(s) 884
NciI CCSGG 2 cut(s) 201, 813
NdeII GATC 7 cut(s) 163, 249, 375, 400, 445, 753, 907
NlaIII CATG 3 cut(s) 854, 1035, 1066
NlaIV GGNNCC 4 cut(s) 746, 885, 942, 1084
NmuCI GTSAC 1 cut(s) 195
NspI RCATGY 1 cut(s) 1035
PagI TCATGA 1 cut(s) 850
PcsI WCGNNNNNNNCGW 1 cut(s) 618
PctI GAATGC 1 cut(s) 991
PfeI GAWTC 2 cut(s) 854, 1066
Pfl23II CGTACG 1 cut(s) 253
PinAI ACCGGT 1 cut(s) 340
PkrI GCNGC 7 cut(s) 279, 498, 655, 658, 959, 962, 1019
Ple19I CGATCG 2 cut(s) 252, 910
PleI GAGTC 1 cut(s) 408
PluTI GGCGCC 1 cut(s) 887
PpsI GAGTC 1 cut(s) 408
PpuMI RGGWCCY 1 cut(s) 1083
PshBI ATTAAT 1 cut(s) 969
PsiI TTATAA 1 cut(s) 63
Psp5II RGGWCCY 1 cut(s) 1083
PspLI CGTACG 1 cut(s) 253
PspN4I GGNNCC 4 cut(s) 746, 885, 942, 1084
PspPI GGNCC 3 cut(s) 152, 203, 1083
PspPPI RGGWCCY 1 cut(s) 1083
PstI CTGCAG 1 cut(s) 796
PsuI RGATCY 2 cut(s) 375, 753
PvuI CGATCG 2 cut(s) 252, 910
RseI CAYNNNNRTG 1 cut(s) 1061
Rsr2I CGGWCCG 1 cut(s) 203
RsrII CGGWCCG 1 cut(s) 203
SaqAI TTAA 3 cut(s) 179, 969, 1071
SatI GCNGC 7 cut(s) 278, 497, 654, 657, 958, 961, 1018
Sau3AI GATC 7 cut(s) 163, 249, 375, 400, 445, 753, 907
Sau96I GGNCC 3 cut(s) 152, 203, 1083
ScaI AGTACT 3 cut(s) 214, 556, 577
SchI GAGTC 1 cut(s) 408
ScrFI CCNGG 2 cut(s) 201, 813
SfaNI GCATC 1 cut(s) 683
SfcI CTRYAG 2 cut(s) 757, 792
SfoI GGCGCC 1 cut(s) 885
SinI GGWCC 2 cut(s) 203, 1083
SmiMI CAYNNNNRTG 1 cut(s) 1061
SmlI CTYRAG 2 cut(s) 120, 394
SmoI CTYRAG 2 cut(s) 120, 394
SpeI ACTAGT 2 cut(s) 557, 734
SsiI CCGC 4 cut(s) 679, 729, 957, 1017
SspDI GGCGCC 1 cut(s) 883
SspI AATATT 1 cut(s) 301
SspMI CTAG 8 cut(s) 461, 530, 558, 573, 690, 735, 945, 1038
StyD4I CCNGG 2 cut(s) 199, 811
TaaI ACNGT 3 cut(s) 43, 554, 587
TaqI TCGA 2 cut(s) 444, 910
TatI WGTACW 4 cut(s) 3, 212, 554, 575
TauI GCSGC 2 cut(s) 960, 1020
TfiI GAWTC 2 cut(s) 854, 1066
Tru1I TTAA 3 cut(s) 179, 969, 1071
Tru9I TTAA 3 cut(s) 179, 969, 1071
TscAI CASTG 1 cut(s) 1027
TseFI GTSAC 1 cut(s) 195
TseI GCWGC 5 cut(s) 277, 496, 653, 656, 960
Tsp45I GTSAC 1 cut(s) 195
TspDTI ATGAA 5 cut(s) 228, 659, 815, 867, 1079
TspGWI ACGGA 1 cut(s) 953
TspRI CASTG 1 cut(s) 1027
VpaK11BI GGWCC 2 cut(s) 203, 1083
VspI ATTAAT 1 cut(s) 969
XceI RCATGY 1 cut(s) 1035
XcmI CCANNNNNNNNNTGG 1 cut(s) 281
XspI CTAG 8 cut(s) 461, 530, 558, 573, 690, 735, 945, 1038
ZrmI AGTACT 3 cut(s) 214, 556, 577
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.