Rh2AG568500

Protein of unknown function (DUF2854)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0005284
Physical Location & Seq
Forward (+)
79940683 .. 79943781
3099 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG568500.1

Sequence Viewer

Length: 1086 bp
ATGTACTCTTCCACCAATAATAACATTAGTAGTAGTGGTACTGTATTTCCATTCCCACCTTATAACTTTCCCTTTTCCTCCTCTCCTTCTTCTCATAACAGCCACCACCCTCTTCTTCCTCAAGAAAATACAACCCGTGGAGGCATTTTTGGCCCACACCATGATCAATTTTCCCTATTAAACAATTGTTTGCTGTCACCCGGACCGGAAAGTACTATGGTCAATCTCGGAGGAGCTTCATCAAACGCGATCGTACCATCATCTGGAGACTACCAGCAGCATTATGGTTATGGTAATAATATTACTCATCCCTATTTTGTTTCTAAGGAGGTGAGAGTACCGGTGGTTGCTGTGAAGAAAGACCGGCACAGCAAGATCTTCACTTCTCAGGGCTTGAGGGATCGGAGGGTAAGACTCTCCATCAATGTTGCCCGTGAGTTCTTCGATCTCCAAGACTTGCTAGGGTTTGACAAAGCCAGCAAAACCTTAGAGTGGCTGCTCAGCAATTCCAGAAAAGCCATCAAAGACCTAGAAAAGAGCAAGTGCAATAACAGTACTAGTATATCATCTTCTAGTACTTCGGACTGTGATGATGTTTTGGACATAAACAACGAGGCGTCCGATGACAAGAGGAGGAAGATGAAGGAGGCTGCTGCTATAATGGCCAGAGCATCGCGGGCAAAGGCTAGAGCAAGAGCAAGAGAAAGAACAAGAGAGAAGATGTGCGGTACTAGTACGAGGAGCCATCAGATCTGTAGCCAGTTGAGCTTGTTCAATGAGCTTGAACCTGTAGATATGAATAAAGAACCGGGTAGTACCCTCCTATCTAATTGTCAAGCTGAATATCATGAATCTGTTGCGCTCAAAAGAAAGCTGAAGGCGCCGTCAGTTTCCAATTATCACGATCGAAGCCTTGAATTGAACCCCAAAAGCACGGAACCTAGTTCAAATTGCGGCAGCCACATTAATATCCAATTTCCGAATGCAATATCTCAAAATTATTGGGACATCAGCGGCAGTGTCTTCACATGCCCTAGCATTTGTGCCATTACCACCAACATGAATCTTAATTCTACGGGGTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2854 UMP1

Protein Analysis

361

Amino Acids

39.92

Weight (kDa)

8.89

Isoelectric Point (pI)

51.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 118 - 242 1.1e-36 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 63
AccB1I GGYRCC 1 cut(s) 880
AccB7I CCANNNNNTGG 1 cut(s) 263
AccII CGCG 2 cut(s) 248, 676
AciI CCGC 4 cut(s) 676, 726, 954, 1014
AclWI GGATC 1 cut(s) 408
AcoI YGGCCR 1 cut(s) 663
AcuI CTGAAG 1 cut(s) 896
AcyI GRCGYC 2 cut(s) 617, 881
AfiI CCNNNNNNNGG 2 cut(s) 263, 492
AgeI ACCGGT 1 cut(s) 340
AgsI TTSAA 5 cut(s) 775, 785, 917, 922, 948
AhlI ACTAGT 2 cut(s) 557, 731
AluBI AGCT 5 cut(s) 236, 768, 781, 839, 874
AluI AGCT 5 cut(s) 236, 768, 781, 839, 874
Alw26I GTCTC 1 cut(s) 261
AlwI GGATC 1 cut(s) 408
AoxI GGCC 2 cut(s) 151, 663
ApeKI GCWGC 5 cut(s) 277, 496, 650, 653, 957
AseI ATTAAT 1 cut(s) 966
AsiGI ACCGGT 1 cut(s) 340
AspLEI GCGC 2 cut(s) 862, 883
AspS9I GGNCC 2 cut(s) 152, 203
AsuC2I CCSGG 2 cut(s) 201, 810
AsuHPI GGTGA 2 cut(s) 189, 343
AvaII GGWCC 1 cut(s) 203
BalI TGGCCA 1 cut(s) 665
BanI GGYRCC 1 cut(s) 880
BarI GAAGNNNNNNTAC 2 cut(s) 553, 585
BbsI GAAGAC 1 cut(s) 1015
BbvI GCAGC 5 cut(s) 289, 483, 637, 640, 969
BccI CCATC 4 cut(s) 265, 428, 527, 753
BceAI ACGGC 1 cut(s) 868
BclI TGATCA 1 cut(s) 163
BcnI CCSGG 2 cut(s) 201, 810
BcoDI GTCTC 1 cut(s) 261
BcuI ACTAGT 2 cut(s) 557, 731
BfaI CTAG 8 cut(s) 461, 530, 558, 573, 687, 732, 942, 1035
BfmI CTRYAG 2 cut(s) 754, 789
BfoI RGCGCY 1 cut(s) 884
BglII AGATCT 2 cut(s) 375, 750
BisI GCNGC 7 cut(s) 278, 497, 651, 654, 955, 958, 1015
BlpI GCTNAGC 1 cut(s) 500
BlsI GCNGC 7 cut(s) 279, 498, 652, 655, 956, 959, 1016
BmcAI AGTACT 3 cut(s) 214, 556, 577
Bme1390I CCNGG 2 cut(s) 201, 810
Bme18I GGWCC 1 cut(s) 203
BmgT120I GGNCC 2 cut(s) 152, 203
BmiI GGNNCC 3 cut(s) 743, 882, 939
BmrFI CCNGG 2 cut(s) 201, 810
BmsI GCATC 1 cut(s) 680
BpiI GAAGAC 1 cut(s) 1015
BpmI CTGGAG 1 cut(s) 285
Bpu1102I GCTNAGC 1 cut(s) 500
BpuEI CTTGAG 2 cut(s) 105, 415
BpuMI CCSGG 2 cut(s) 201, 810
BsaHI GRCGYC 2 cut(s) 617, 881
BsaJI CCNNGG 1 cut(s) 136
BsaWI WCCGGW 2 cut(s) 205, 340
Bsc4I CCNNNNNNNGG 2 cut(s) 263, 492
Bse118I RCCGGY 2 cut(s) 340, 363
Bse1I ACTGG 1 cut(s) 760
BseDI CCNNGG 1 cut(s) 136
BseGI GGATG 1 cut(s) 307
BseLI CCNNNNNNNGG 2 cut(s) 263, 492
BseMII CTCAG 2 cut(s) 401, 514
BseNI ACTGG 1 cut(s) 760
BseRI GAGGAG 4 cut(s) 70, 246, 646, 754
BseXI GCAGC 5 cut(s) 289, 483, 637, 640, 969
Bsh1236I CGCG 2 cut(s) 248, 676
Bsh1285I CGRYCG 2 cut(s) 252, 907
BshFI GGCC 2 cut(s) 153, 665
BshNI GGYRCC 1 cut(s) 880
BshTI ACCGGT 1 cut(s) 340
BsiEI CGRYCG 2 cut(s) 252, 907
BsiSI CCGG 5 cut(s) 201, 206, 341, 364, 809
BslFI GGGAC 1 cut(s) 1019
BslI CCNNNNNNNGG 2 cut(s) 263, 492
BsmAI GTCTC 1 cut(s) 261
BsmFI GGGAC 1 cut(s) 1019
BsmI GAATGC 1 cut(s) 988
BsnI GGCC 2 cut(s) 153, 665
Bsp143I GATC 7 cut(s) 163, 249, 375, 400, 445, 750, 904
Bsp1720I GCTNAGC 1 cut(s) 500
BspACI CCGC 4 cut(s) 676, 726, 954, 1014
BspANI GGCC 2 cut(s) 153, 665
BspCNI CTCAG 2 cut(s) 400, 513
BspFNI CGCG 2 cut(s) 248, 676
BspHI TCATGA 1 cut(s) 847
BspLI GGNNCC 3 cut(s) 743, 882, 939
BspPI GGATC 1 cut(s) 408
BspT107I GGYRCC 1 cut(s) 880
BsrFI RCCGGY 2 cut(s) 340, 363
BsrI ACTGG 1 cut(s) 760
BssAI RCCGGY 2 cut(s) 340, 363
BssECI CCNNGG 1 cut(s) 136
BssMI GATC 7 cut(s) 163, 249, 375, 400, 445, 750, 904
BssNI GRCGYC 2 cut(s) 617, 881
Bst4CI ACNGT 3 cut(s) 43, 554, 587
Bst6I CTCTTC 2 cut(s) 13, 117
BstACI GRCGYC 2 cut(s) 617, 881
BstC8I GCNNGC 2 cut(s) 478, 678
BstDEI CTNAG 4 cut(s) 324, 387, 487, 500
BstDSI CCRYGG 1 cut(s) 136
BstF5I GGATG 1 cut(s) 307
BstFNI CGCG 2 cut(s) 248, 676
BstH2I RGCGCY 1 cut(s) 884
BstHHI GCGC 2 cut(s) 862, 883
BstKTI GATC 7 cut(s) 166, 252, 378, 403, 448, 753, 907
BstMAI GTCTC 1 cut(s) 261
BstMBI GATC 7 cut(s) 163, 249, 375, 400, 445, 750, 904
BstMCI CGRYCG 2 cut(s) 252, 907
BstMWI GCNNNNNNNGC 5 cut(s) 150, 662, 677, 765, 880
BstNSI RCATGY 1 cut(s) 1032
BstSCI CCNGG 2 cut(s) 199, 808
BstSFI CTRYAG 2 cut(s) 754, 789
BstUI CGCG 2 cut(s) 248, 676
BstV1I GCAGC 5 cut(s) 289, 483, 637, 640, 969
BstV2I GAAGAC 1 cut(s) 1015
BstX2I RGATCY 2 cut(s) 375, 750
BstYI RGATCY 2 cut(s) 375, 750
BsuRI GGCC 2 cut(s) 153, 665
BtgI CCRYGG 1 cut(s) 136
BtgZI GCGATG 1 cut(s) 657
BtsCI GGATG 1 cut(s) 307
BtsI GCAGTG 1 cut(s) 1024
BtsIMutI CAGTG 1 cut(s) 1024
Cac8I GCNNGC 2 cut(s) 478, 678
CciI TCATGA 1 cut(s) 847
CfoI GCGC 2 cut(s) 862, 883
Cfr10I RCCGGY 2 cut(s) 340, 363
Cfr13I GGNCC 2 cut(s) 152, 203
CpoI CGGWCCG 1 cut(s) 203
CseI GACGC 1 cut(s) 606
CspAI ACCGGT 1 cut(s) 340
CspI CGGWCCG 1 cut(s) 203
CviAII CATG 4 cut(s) 161, 848, 1029, 1060
DdeI CTNAG 4 cut(s) 324, 387, 487, 500
DinI GGCGCC 1 cut(s) 882
DpnI GATC 7 cut(s) 165, 251, 377, 402, 447, 752, 906
DpnII GATC 7 cut(s) 163, 249, 375, 400, 445, 750, 904
EaeI YGGCCR 1 cut(s) 663
Eam1104I CTCTTC 2 cut(s) 13, 117
EarI CTCTTC 2 cut(s) 13, 117
Eco47I GGWCC 1 cut(s) 203
Eco57I CTGAAG 1 cut(s) 896
EgeI GGCGCC 1 cut(s) 882
EheI GGCGCC 1 cut(s) 882
FaeI CATG 4 cut(s) 164, 851, 1032, 1063
FaqI GGGAC 1 cut(s) 1019
FatI CATG 4 cut(s) 160, 847, 1028, 1059
FauI CCCGC 1 cut(s) 669
FbaI TGATCA 1 cut(s) 163
Fnu4HI GCNGC 7 cut(s) 278, 497, 651, 654, 955, 958, 1015
FokI GGATG 1 cut(s) 294
Fsp4HI GCNGC 7 cut(s) 278, 497, 651, 654, 955, 958, 1015
FspBI CTAG 8 cut(s) 461, 530, 558, 573, 687, 732, 942, 1035
GlaI GCGC 2 cut(s) 861, 882
GluI GCNGC 7 cut(s) 278, 497, 651, 654, 955, 958, 1015
GsuI CTGGAG 1 cut(s) 285
HaeII RGCGCY 1 cut(s) 884
HaeIII GGCC 2 cut(s) 153, 665
HapII CCGG 5 cut(s) 201, 206, 341, 364, 809
HgaI GACGC 1 cut(s) 606
HhaI GCGC 2 cut(s) 862, 883
Hin1I GRCGYC 2 cut(s) 617, 881
Hin1II CATG 4 cut(s) 164, 851, 1032, 1063
Hin6I GCGC 2 cut(s) 860, 881
HinP1I GCGC 2 cut(s) 860, 881
HinfI GANTC 3 cut(s) 414, 851, 1063
HpaII CCGG 5 cut(s) 201, 206, 341, 364, 809
HphI GGTGA 2 cut(s) 189, 343
Hpy188I TCNGA 6 cut(s) 230, 405, 583, 622, 750, 981
Hpy188III TCNNGA 5 cut(s) 122, 264, 510, 848, 902
HpyAV CCTTC 3 cut(s) 96, 637, 871
HpyCH4III ACNGT 3 cut(s) 43, 554, 587
HpyCH4V TGCA 2 cut(s) 546, 986
HpyF10VI GCNNNNNNNGC 5 cut(s) 150, 662, 677, 765, 880
HpyF3I CTNAG 4 cut(s) 324, 387, 487, 500
Hsp92I GRCGYC 2 cut(s) 617, 881
Hsp92II CATG 4 cut(s) 164, 851, 1032, 1063
HspAI GCGC 2 cut(s) 860, 881
KasI GGCGCC 1 cut(s) 880
Ksp22I TGATCA 1 cut(s) 163
Kzo9I GATC 7 cut(s) 163, 249, 375, 400, 445, 750, 904
LmnI GCTCC 2 cut(s) 233, 741
Lsp1109I GCAGC 5 cut(s) 289, 483, 637, 640, 969
LweI GCATC 1 cut(s) 680
MaeI CTAG 8 cut(s) 461, 530, 558, 573, 687, 732, 942, 1035
MaeIII GTNAC 1 cut(s) 195
MalI GATC 7 cut(s) 165, 251, 377, 402, 447, 752, 906
MboI GATC 7 cut(s) 163, 249, 375, 400, 445, 750, 904
MfeI CAATTG 1 cut(s) 184
MflI RGATCY 2 cut(s) 375, 750
MlsI TGGCCA 1 cut(s) 665
MluNI TGGCCA 1 cut(s) 665
Mly113I GGCGCC 1 cut(s) 881
MlyI GAGTC 1 cut(s) 408
Mox20I TGGCCA 1 cut(s) 665
MscI TGGCCA 1 cut(s) 665
MseI TTAA 4 cut(s) 179, 966, 1068, 1084
MslI CAYNNNNRTG 1 cut(s) 1058
Msp20I TGGCCA 1 cut(s) 665
MspA1I CMGCKG 1 cut(s) 1014
MspI CCGG 5 cut(s) 201, 206, 341, 364, 809
MspR9I CCNGG 2 cut(s) 201, 810
MunI CAATTG 1 cut(s) 184
Mva1269I GAATGC 1 cut(s) 988
MvnI CGCG 2 cut(s) 248, 676
MwoI GCNNNNNNNGC 5 cut(s) 150, 662, 677, 765, 880
NarI GGCGCC 1 cut(s) 881
NciI CCSGG 2 cut(s) 201, 810
NdeII GATC 7 cut(s) 163, 249, 375, 400, 445, 750, 904
NlaIII CATG 4 cut(s) 164, 851, 1032, 1063
NlaIV GGNNCC 3 cut(s) 743, 882, 939
NmuCI GTSAC 1 cut(s) 195
NspI RCATGY 1 cut(s) 1032
PagI TCATGA 1 cut(s) 847
PcsI WCGNNNNNNNCGW 1 cut(s) 618
PctI GAATGC 1 cut(s) 988
PfeI GAWTC 2 cut(s) 851, 1063
PflMI CCANNNNNTGG 1 cut(s) 263
PinAI ACCGGT 1 cut(s) 340
PkrI GCNGC 7 cut(s) 279, 498, 652, 655, 956, 959, 1016
Ple19I CGATCG 2 cut(s) 252, 907
PleI GAGTC 1 cut(s) 408
PluTI GGCGCC 1 cut(s) 884
PpsI GAGTC 1 cut(s) 408
PshBI ATTAAT 1 cut(s) 966
PsiI TTATAA 1 cut(s) 63
PspN4I GGNNCC 3 cut(s) 743, 882, 939
PspPI GGNCC 2 cut(s) 152, 203
PsuI RGATCY 2 cut(s) 375, 750
PvuI CGATCG 2 cut(s) 252, 907
RseI CAYNNNNRTG 1 cut(s) 1058
Rsr2I CGGWCCG 1 cut(s) 203
RsrII CGGWCCG 1 cut(s) 203
SaqAI TTAA 4 cut(s) 179, 966, 1068, 1084
SatI GCNGC 7 cut(s) 278, 497, 651, 654, 955, 958, 1015
Sau3AI GATC 7 cut(s) 163, 249, 375, 400, 445, 750, 904
Sau96I GGNCC 2 cut(s) 152, 203
ScaI AGTACT 3 cut(s) 214, 556, 577
SchI GAGTC 1 cut(s) 408
ScrFI CCNGG 2 cut(s) 201, 810
SfaNI GCATC 1 cut(s) 680
SfcI CTRYAG 2 cut(s) 754, 789
SfoI GGCGCC 1 cut(s) 882
SinI GGWCC 1 cut(s) 203
SmiMI CAYNNNNRTG 1 cut(s) 1058
SmlI CTYRAG 2 cut(s) 120, 394
SmoI CTYRAG 2 cut(s) 120, 394
SpeI ACTAGT 2 cut(s) 557, 731
SsiI CCGC 4 cut(s) 676, 726, 954, 1014
SspDI GGCGCC 1 cut(s) 880
SspI AATATT 1 cut(s) 301
SspMI CTAG 8 cut(s) 461, 530, 558, 573, 687, 732, 942, 1035
StyD4I CCNGG 2 cut(s) 199, 808
TaaI ACNGT 3 cut(s) 43, 554, 587
TaqI TCGA 2 cut(s) 444, 907
TatI WGTACW 4 cut(s) 3, 212, 554, 575
TauI GCSGC 2 cut(s) 957, 1017
TfiI GAWTC 2 cut(s) 851, 1063
Tru1I TTAA 4 cut(s) 179, 966, 1068, 1084
Tru9I TTAA 4 cut(s) 179, 966, 1068, 1084
TscAI CASTG 1 cut(s) 1024
TseFI GTSAC 1 cut(s) 195
TseI GCWGC 5 cut(s) 277, 496, 650, 653, 957
Tsp45I GTSAC 1 cut(s) 195
TspDTI ATGAA 5 cut(s) 228, 656, 812, 864, 1076
TspGWI ACGGA 1 cut(s) 950
TspRI CASTG 1 cut(s) 1024
Van91I CCANNNNNTGG 1 cut(s) 263
VpaK11BI GGWCC 1 cut(s) 203
VspI ATTAAT 1 cut(s) 966
XceI RCATGY 1 cut(s) 1032
XcmI CCANNNNNNNNNTGG 1 cut(s) 281
XspI CTAG 8 cut(s) 461, 530, 558, 573, 687, 732, 942, 1035
ZrmI AGTACT 3 cut(s) 214, 556, 577
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.