Rmu_sc0021084.1_g000007

Protein of unknown function (DUF2854)

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0021084.1
Physical Location & Seq
Forward (+)
33619 .. 35638
2020 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0021084.1_g000007.1.cds

Sequence Viewer

Length: 1230 bp
atgagctcggtctcagagaaagcgactctgaagaagaatcttgaaaaatatcgaaagggtgaagcaaagctcgctctctcatctgaaccagtaatcatgtgctcttccaccaataataacattagtagtagtggtactgtatttcctttcccaccttataactttcccttttcctcctcctcttcttctcataacagccaccaccctcttcttcctcaagaaaatacaacctgtggaggcatttttggcctacaccatgatcaattttccctattaaacaattgtttgctgtcacccggaccggaaagtactatggtcaatctcggaggagcttcatcaaacgcgatcgtaccatcatctggaggctaccagcagcattatggttatggtaataatattactcatccctattttgttactgaggaggtgagagtaccggtggttgctgtgaagaaagaccggcacagcaagatcttcacttctcaggggttgagggatcggagggtaagactctccatcaatgttgcccgtgagttcttcgatctccaagacttgctagggtttgacaaagccagcaaaaccttagagtggctgctcagcaattccacaaaggccatcaaagacctagaaaagagcaagtgcaataacagtactagtatatcatcttctagtacttcggactgtgatgatgttttggacacaaacaacgaggcgtccgatgacaagaggaggaagatgaaggaggctgctgctataatggccagagcatcgcgggcaaaggctagagcaagagcaagagaaagaacaagagagaagatgtgcagtactagtacgaggagccctcagatctgtagccagttgagcttgttcaatgagcttgaacatgcagatatgaataaagaaccgggcagtacactcctatctaattgtcaagctgaatatcatgaatctgttgcgctcaaaagaaagctgaaggcgccgtcagtttccaattatcacgatcgaagccttcaattgaaccccaaaagcacggaacctagttcaaattgcggcagccacattaatatccaatttccgaatgcaatatctcaaaattattgggacatcagcggcagtgtcttcacatgccctagcatttgtgccattaccaccaacatgaatcttaattctacggctgatgatcaaggtggtgatatccatgacaatacatataaagctgttccctgttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

409

Amino Acids

44.98

Weight (kDa)

8.51

Isoelectric Point (pI)

50.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 159
AccB1I GGYRCC 1 cut(s) 976
AccB7I CCANNNNNTGG 1 cut(s) 359
AccII CGCG 2 cut(s) 344, 772
AciI CCGC 3 cut(s) 772, 1050, 1110
AclWI GGATC 1 cut(s) 504
AcoI YGGCCR 1 cut(s) 759
AcuI CTGAAG 2 cut(s) 50, 992
AcyI GRCGYC 2 cut(s) 713, 977
AfaI GTAC 9 cut(s) 136, 310, 351, 435, 652, 673, 826, 832, 913
AfiI CCNNNNNNNGG 2 cut(s) 359, 588
AgeI ACCGGT 1 cut(s) 436
AgsI TTSAA 6 cut(s) 44, 871, 881, 1013, 1018, 1044
AhlI ACTAGT 2 cut(s) 653, 827
AluBI AGCT 8 cut(s) 6, 70, 332, 864, 877, 935, 970, 1217
AluI AGCT 8 cut(s) 6, 70, 332, 864, 877, 935, 970, 1217
Alw21I GWGCWC 2 cut(s) 8, 104
Alw26I GTCTC 1 cut(s) 16
AlwI GGATC 1 cut(s) 504
AoxI GGCC 3 cut(s) 247, 612, 759
ApeKI GCWGC 5 cut(s) 373, 592, 746, 749, 1053
AseI ATTAAT 1 cut(s) 1062
AsiGI ACCGGT 1 cut(s) 436
AspLEI GCGC 2 cut(s) 958, 979
AspS9I GGNCC 1 cut(s) 299
AsuC2I CCSGG 2 cut(s) 297, 906
AsuHPI GGTGA 4 cut(s) 71, 285, 439, 1202
AvaII GGWCC 1 cut(s) 299
BalI TGGCCA 1 cut(s) 761
BanI GGYRCC 1 cut(s) 976
BanII GRGCYC 2 cut(s) 8, 842
BarI GAAGNNNNNNTAC 2 cut(s) 649, 681
BbsI GAAGAC 1 cut(s) 1111
Bbv12I GWGCWC 2 cut(s) 8, 104
BbvI GCAGC 5 cut(s) 385, 579, 733, 736, 1065
BccI CCATC 3 cut(s) 361, 524, 623
BceAI ACGGC 2 cut(s) 964, 1188
BclI TGATCA 2 cut(s) 259, 1180
BcnI CCSGG 2 cut(s) 297, 906
BcoDI GTCTC 1 cut(s) 16
BcuI ACTAGT 2 cut(s) 653, 827
BfaI CTAG 8 cut(s) 557, 626, 654, 669, 783, 828, 1038, 1131
BfmI CTRYAG 1 cut(s) 850
BfoI RGCGCY 1 cut(s) 980
BglII AGATCT 2 cut(s) 471, 846
BisI GCNGC 7 cut(s) 374, 593, 747, 750, 1051, 1054, 1111
BlpI GCTNAGC 1 cut(s) 596
BlsI GCNGC 7 cut(s) 375, 594, 748, 751, 1052, 1055, 1112
BmcAI AGTACT 4 cut(s) 310, 652, 673, 826
Bme1390I CCNGG 2 cut(s) 297, 906
Bme18I GGWCC 1 cut(s) 299
BmgT120I GGNCC 1 cut(s) 299
BmiI GGNNCC 3 cut(s) 839, 978, 1035
BmrFI CCNGG 2 cut(s) 297, 906
BmsI GCATC 1 cut(s) 776
BpiI GAAGAC 1 cut(s) 1111
BplI GAGNNNNNCTC 2 cut(s) 826, 858
BpmI CTGGAG 1 cut(s) 381
Bpu1102I GCTNAGC 1 cut(s) 596
BpuEI CTTGAG 1 cut(s) 201
BpuMI CCSGG 2 cut(s) 297, 906
BsaHI GRCGYC 2 cut(s) 713, 977
BsaI GGTCTC 1 cut(s) 16
BsaWI WCCGGW 2 cut(s) 301, 436
Bsc4I CCNNNNNNNGG 2 cut(s) 359, 588
Bse118I RCCGGY 2 cut(s) 436, 459
Bse1I ACTGG 2 cut(s) 89, 856
BseGI GGATG 1 cut(s) 403
BseLI CCNNNNNNNGG 2 cut(s) 359, 588
BseMII CTCAG 5 cut(s) 27, 411, 497, 610, 857
BseNI ACTGG 2 cut(s) 89, 856
BseRI GAGGAG 6 cut(s) 166, 169, 342, 437, 742, 850
BseXI GCAGC 5 cut(s) 385, 579, 733, 736, 1065
BsgI GTGCAG 1 cut(s) 841
Bsh1236I CGCG 2 cut(s) 344, 772
Bsh1285I CGRYCG 2 cut(s) 348, 1003
BshFI GGCC 3 cut(s) 249, 614, 761
BshNI GGYRCC 1 cut(s) 976
BshTI ACCGGT 1 cut(s) 436
BsiEI CGRYCG 2 cut(s) 348, 1003
BsiHKAI GWGCWC 2 cut(s) 8, 104
BsiSI CCGG 5 cut(s) 297, 302, 437, 460, 905
BslFI GGGAC 1 cut(s) 1115
BslI CCNNNNNNNGG 2 cut(s) 359, 588
BsmAI GTCTC 1 cut(s) 16
BsmFI GGGAC 1 cut(s) 1115
BsmI GAATGC 1 cut(s) 1084
BsnI GGCC 3 cut(s) 249, 614, 761
Bso31I GGTCTC 1 cut(s) 16
Bsp1286I GDGCHC 3 cut(s) 8, 104, 842
Bsp143I GATC 8 cut(s) 259, 345, 471, 496, 541, 846, 1000, 1180
Bsp1720I GCTNAGC 1 cut(s) 596
BspACI CCGC 3 cut(s) 772, 1050, 1110
BspANI GGCC 3 cut(s) 249, 614, 761
BspCNI CTCAG 5 cut(s) 26, 412, 496, 609, 856
BspFNI CGCG 2 cut(s) 344, 772
BspHI TCATGA 1 cut(s) 943
BspLI GGNNCC 3 cut(s) 839, 978, 1035
BspPI GGATC 1 cut(s) 504
BspQI GCTCTTC 1 cut(s) 109
BspT107I GGYRCC 1 cut(s) 976
BspTNI GGTCTC 1 cut(s) 16
BsrFI RCCGGY 2 cut(s) 436, 459
BsrI ACTGG 2 cut(s) 89, 856
BssAI RCCGGY 2 cut(s) 436, 459
BssMI GATC 8 cut(s) 259, 345, 471, 496, 541, 846, 1000, 1180
BssNI GRCGYC 2 cut(s) 713, 977
Bst4CI ACNGT 3 cut(s) 139, 650, 683
Bst6I CTCTTC 3 cut(s) 109, 187, 213
BstACI GRCGYC 2 cut(s) 713, 977
BstC8I GCNNGC 3 cut(s) 72, 574, 774
BstDEI CTNAG 6 cut(s) 13, 420, 483, 583, 596, 843
BstF5I GGATG 1 cut(s) 403
BstFNI CGCG 2 cut(s) 344, 772
BstH2I RGCGCY 1 cut(s) 980
BstHHI GCGC 2 cut(s) 958, 979
BstKTI GATC 8 cut(s) 262, 348, 474, 499, 544, 849, 1003, 1183
BstMAI GTCTC 1 cut(s) 16
BstMBI GATC 8 cut(s) 259, 345, 471, 496, 541, 846, 1000, 1180
BstMCI CGRYCG 2 cut(s) 348, 1003
BstMWI GCNNNNNNNGC 6 cut(s) 71, 246, 758, 773, 861, 976
BstNSI RCATGY 2 cut(s) 887, 1128
BstSCI CCNGG 2 cut(s) 295, 904
BstSFI CTRYAG 1 cut(s) 850
BstUI CGCG 2 cut(s) 344, 772
BstV1I GCAGC 5 cut(s) 385, 579, 733, 736, 1065
BstV2I GAAGAC 1 cut(s) 1111
BstX2I RGATCY 2 cut(s) 471, 846
BstYI RGATCY 2 cut(s) 471, 846
BsuRI GGCC 3 cut(s) 249, 614, 761
BtgZI GCGATG 1 cut(s) 753
BtsCI GGATG 1 cut(s) 403
BtsI GCAGTG 1 cut(s) 1120
BtsIMutI CAGTG 1 cut(s) 1120
Cac8I GCNNGC 3 cut(s) 72, 574, 774
CciI TCATGA 1 cut(s) 943
CfoI GCGC 2 cut(s) 958, 979
Cfr10I RCCGGY 2 cut(s) 436, 459
Cfr13I GGNCC 1 cut(s) 299
CpoI CGGWCCG 1 cut(s) 299
CseI GACGC 1 cut(s) 702
Csp6I GTAC 9 cut(s) 135, 309, 350, 434, 651, 672, 825, 831, 912
CspAI ACCGGT 1 cut(s) 436
CspI CGGWCCG 1 cut(s) 299
CviAII CATG 7 cut(s) 97, 257, 884, 944, 1125, 1156, 1199
CviQI GTAC 9 cut(s) 135, 309, 350, 434, 651, 672, 825, 831, 912
DdeI CTNAG 6 cut(s) 13, 420, 483, 583, 596, 843
DinI GGCGCC 1 cut(s) 978
DpnI GATC 8 cut(s) 261, 347, 473, 498, 543, 848, 1002, 1182
DpnII GATC 8 cut(s) 259, 345, 471, 496, 541, 846, 1000, 1180
EaeI YGGCCR 1 cut(s) 759
Eam1104I CTCTTC 3 cut(s) 109, 187, 213
EarI CTCTTC 3 cut(s) 109, 187, 213
Ecl136II GAGCTC 1 cut(s) 6
Eco24I GRGCYC 2 cut(s) 8, 842
Eco31I GGTCTC 1 cut(s) 16
Eco32I GATATC 1 cut(s) 1195
Eco47I GGWCC 1 cut(s) 299
Eco53kI GAGCTC 1 cut(s) 6
Eco57I CTGAAG 2 cut(s) 50, 992
EcoICRI GAGCTC 1 cut(s) 6
EcoRV GATATC 1 cut(s) 1195
EcoT38I GRGCYC 2 cut(s) 8, 842
EgeI GGCGCC 1 cut(s) 978
EheI GGCGCC 1 cut(s) 978
FaeI CATG 7 cut(s) 100, 260, 887, 947, 1128, 1159, 1202
FaqI GGGAC 1 cut(s) 1115
FatI CATG 7 cut(s) 96, 256, 883, 943, 1124, 1155, 1198
FauI CCCGC 1 cut(s) 765
FbaI TGATCA 2 cut(s) 259, 1180
Fnu4HI GCNGC 7 cut(s) 374, 593, 747, 750, 1051, 1054, 1111
FokI GGATG 1 cut(s) 390
FriOI GRGCYC 2 cut(s) 8, 842
Fsp4HI GCNGC 7 cut(s) 374, 593, 747, 750, 1051, 1054, 1111
FspBI CTAG 8 cut(s) 557, 626, 654, 669, 783, 828, 1038, 1131
GlaI GCGC 2 cut(s) 957, 978
GluI GCNGC 7 cut(s) 374, 593, 747, 750, 1051, 1054, 1111
GsuI CTGGAG 1 cut(s) 381
HaeII RGCGCY 1 cut(s) 980
HaeIII GGCC 3 cut(s) 249, 614, 761
HapII CCGG 5 cut(s) 297, 302, 437, 460, 905
HgaI GACGC 1 cut(s) 702
HhaI GCGC 2 cut(s) 958, 979
Hin1I GRCGYC 2 cut(s) 713, 977
Hin1II CATG 7 cut(s) 100, 260, 887, 947, 1128, 1159, 1202
Hin6I GCGC 2 cut(s) 956, 977
HinP1I GCGC 2 cut(s) 956, 977
HinfI GANTC 5 cut(s) 25, 37, 510, 947, 1159
HpaII CCGG 5 cut(s) 297, 302, 437, 460, 905
HphI GGTGA 4 cut(s) 71, 285, 439, 1202
Hpy166II GTNNAC 1 cut(s) 914
Hpy188I TCNGA 9 cut(s) 16, 30, 85, 326, 501, 679, 718, 846, 1077
Hpy188III TCNNGA 5 cut(s) 41, 218, 360, 944, 998
Hpy8I GTNNAC 1 cut(s) 914
HpyAV CCTTC 3 cut(s) 733, 967, 1019
HpyCH4III ACNGT 3 cut(s) 139, 650, 683
HpyCH4V TGCA 4 cut(s) 642, 822, 887, 1082
HpyF10VI GCNNNNNNNGC 6 cut(s) 71, 246, 758, 773, 861, 976
HpyF3I CTNAG 6 cut(s) 13, 420, 483, 583, 596, 843
Hsp92I GRCGYC 2 cut(s) 713, 977
Hsp92II CATG 7 cut(s) 100, 260, 887, 947, 1128, 1159, 1202
HspAI GCGC 2 cut(s) 956, 977
KasI GGCGCC 1 cut(s) 976
Ksp22I TGATCA 2 cut(s) 259, 1180
Kzo9I GATC 8 cut(s) 259, 345, 471, 496, 541, 846, 1000, 1180
LguI GCTCTTC 1 cut(s) 109
LmnI GCTCC 2 cut(s) 329, 837
Lsp1109I GCAGC 5 cut(s) 385, 579, 733, 736, 1065
LweI GCATC 1 cut(s) 776
MaeI CTAG 8 cut(s) 557, 626, 654, 669, 783, 828, 1038, 1131
MaeIII GTNAC 2 cut(s) 291, 415
MalI GATC 8 cut(s) 261, 347, 473, 498, 543, 848, 1002, 1182
MboI GATC 8 cut(s) 259, 345, 471, 496, 541, 846, 1000, 1180
MfeI CAATTG 2 cut(s) 280, 1013
MflI RGATCY 2 cut(s) 471, 846
MhlI GDGCHC 3 cut(s) 8, 104, 842
MlsI TGGCCA 1 cut(s) 761
MluNI TGGCCA 1 cut(s) 761
Mly113I GGCGCC 1 cut(s) 977
MlyI GAGTC 2 cut(s) 19, 504
Mox20I TGGCCA 1 cut(s) 761
MscI TGGCCA 1 cut(s) 761
MseI TTAA 3 cut(s) 275, 1062, 1164
MslI CAYNNNNRTG 1 cut(s) 1154
Msp20I TGGCCA 1 cut(s) 761
MspA1I CMGCKG 1 cut(s) 1110
MspI CCGG 5 cut(s) 297, 302, 437, 460, 905
MspR9I CCNGG 2 cut(s) 297, 906
MunI CAATTG 2 cut(s) 280, 1013
Mva1269I GAATGC 1 cut(s) 1084
MvnI CGCG 2 cut(s) 344, 772
MwoI GCNNNNNNNGC 6 cut(s) 71, 246, 758, 773, 861, 976
NarI GGCGCC 1 cut(s) 977
NciI CCSGG 2 cut(s) 297, 906
NdeII GATC 8 cut(s) 259, 345, 471, 496, 541, 846, 1000, 1180
NlaIII CATG 7 cut(s) 100, 260, 887, 947, 1128, 1159, 1202
NlaIV GGNNCC 3 cut(s) 839, 978, 1035
NmuCI GTSAC 1 cut(s) 291
NspI RCATGY 2 cut(s) 887, 1128
PagI TCATGA 1 cut(s) 943
PciSI GCTCTTC 1 cut(s) 109
PcsI WCGNNNNNNNCGW 1 cut(s) 714
PctI GAATGC 1 cut(s) 1084
PfeI GAWTC 3 cut(s) 37, 947, 1159
PflMI CCANNNNNTGG 1 cut(s) 359
PinAI ACCGGT 1 cut(s) 436
PkrI GCNGC 7 cut(s) 375, 594, 748, 751, 1052, 1055, 1112
Ple19I CGATCG 2 cut(s) 348, 1003
PleI GAGTC 2 cut(s) 19, 504
PluTI GGCGCC 1 cut(s) 980
PpsI GAGTC 2 cut(s) 19, 504
PshBI ATTAAT 1 cut(s) 1062
PsiI TTATAA 1 cut(s) 159
Psp124BI GAGCTC 1 cut(s) 8
PspN4I GGNNCC 3 cut(s) 839, 978, 1035
PspPI GGNCC 1 cut(s) 299
PsuI RGATCY 2 cut(s) 471, 846
PvuI CGATCG 2 cut(s) 348, 1003
RsaI GTAC 9 cut(s) 136, 310, 351, 435, 652, 673, 826, 832, 913
RsaNI GTAC 9 cut(s) 135, 309, 350, 434, 651, 672, 825, 831, 912
RseI CAYNNNNRTG 1 cut(s) 1154
Rsr2I CGGWCCG 1 cut(s) 299
RsrII CGGWCCG 1 cut(s) 299
SacI GAGCTC 1 cut(s) 8
SapI GCTCTTC 1 cut(s) 109
SaqAI TTAA 3 cut(s) 275, 1062, 1164
SatI GCNGC 7 cut(s) 374, 593, 747, 750, 1051, 1054, 1111
Sau3AI GATC 8 cut(s) 259, 345, 471, 496, 541, 846, 1000, 1180
Sau96I GGNCC 1 cut(s) 299
ScaI AGTACT 4 cut(s) 310, 652, 673, 826
SchI GAGTC 2 cut(s) 19, 504
ScrFI CCNGG 2 cut(s) 297, 906
SduI GDGCHC 3 cut(s) 8, 104, 842
SfaNI GCATC 1 cut(s) 776
SfcI CTRYAG 1 cut(s) 850
SfoI GGCGCC 1 cut(s) 978
SinI GGWCC 1 cut(s) 299
SmiMI CAYNNNNRTG 1 cut(s) 1154
SmlI CTYRAG 1 cut(s) 216
SmoI CTYRAG 1 cut(s) 216
SpeI ACTAGT 2 cut(s) 653, 827
SsiI CCGC 3 cut(s) 772, 1050, 1110
SspDI GGCGCC 1 cut(s) 976
SspI AATATT 1 cut(s) 397
SspMI CTAG 8 cut(s) 557, 626, 654, 669, 783, 828, 1038, 1131
SstI GAGCTC 1 cut(s) 8
StyD4I CCNGG 2 cut(s) 295, 904
TaaI ACNGT 3 cut(s) 139, 650, 683
TaqI TCGA 3 cut(s) 52, 540, 1003
TatI WGTACW 5 cut(s) 308, 650, 671, 824, 911
TauI GCSGC 2 cut(s) 1053, 1113
TfiI GAWTC 3 cut(s) 37, 947, 1159
Tru1I TTAA 3 cut(s) 275, 1062, 1164
Tru9I TTAA 3 cut(s) 275, 1062, 1164
TscAI CASTG 1 cut(s) 1120
TseFI GTSAC 1 cut(s) 291
TseI GCWGC 5 cut(s) 373, 592, 746, 749, 1053
Tsp45I GTSAC 1 cut(s) 291
TspDTI ATGAA 5 cut(s) 324, 752, 908, 960, 1172
TspGWI ACGGA 1 cut(s) 1046
TspRI CASTG 1 cut(s) 1120
Van91I CCANNNNNTGG 1 cut(s) 359
VpaK11BI GGWCC 1 cut(s) 299
VspI ATTAAT 1 cut(s) 1062
XceI RCATGY 2 cut(s) 887, 1128
XcmI CCANNNNNNNNNTGG 1 cut(s) 377
XspI CTAG 8 cut(s) 557, 626, 654, 669, 783, 828, 1038, 1131
ZrmI AGTACT 4 cut(s) 310, 652, 673, 826
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.