Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000979.1

Orthogroup ID

OG0005284

Physical Location & Seq

Genomic Coordinates Forward (+)

41807 .. 43732

Gene Structure 1926 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000979.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

atgtgctcttccaccaataataacattagtagtagtggtactgtatttcctttcccaccttataactttcccttttcctcctcctcttcttctcataacagccaccaccctcttcttcctcaagaaaatacaacctgtggaggcatttttggcctacaccatgatcaattttccctattaaacaattgtttgctgtcacccggaccggaaagtactatggtcaatctcggaggagcttcatcaaacgcgatcgtaccatcatctggaggctaccagcagcattatggttatggtaataatattactcatccctattttgtttctaaggaggtgagagtaccggtggttgctgtgaagaaagaccggcacagcaagatcttcacttctcaggggttgagggatcggagggtaagactctccatcaatgttgcccgtgagttcttcgatctccaagacttgctagggtttgacaaagccagcaaaaccttagactggctgctcagcaattccacaaaggccatcaaagacctagaaaagagcaagtgcaataacagtactagtatatcatcttctagtacttcggactgtgatgatgttttggacacaaacaacgaggcgtccgatgacaagaggaggaagatgaaggaggctgctgctataatggccagagcatcgcgggcaaaggctagagcaagagcaagagaaagaacaagagagaagatgtgcagtactagtacgaggagccctcagatctgtagccagttgagcttgttcaatgagcttgaacatgcagatatgaataaagaaccgggcagtacactcctatctaattgtcaagctgaatatcatgagtctgttgagctcaaaagaaagctgaaggcgccgtcagtttccaattatcatgatcgaagccttgaattgaaccccaaaagcacggaacctagttcaaattgctgcagccacattaatatccaatttccgaatgcaatatctcaaaattattgggacatcagcggcagtgtcttcacatgccctagcatttgtgccattaccaccaacatgaatcttaattctacggctgatgatcaaggtggtgatatccatgacaatacatataaagctgttccctgttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2854 UMP1

Protein Analysis

377

Amino Acids

41.54

Weight (kDa)

7.92

Isoelectric Point (pI)

49.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005284)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67260 AT1G67260 AT1G67260
fragaria_vesca	FvH4_6g45410 FvH4_6g45410
malus_domestica	MD09G1083300.v1.1 MD09G1083500.v1.1 MD17G1073600.v1.1
prunus_persica	Prupe.3G240200_v2.0.a1
pyrus_communis	pycom09g00970 pycom17g07450
rosa_chinensis	RchiOBHm_Chr1g0342441 RchiOBHm_Chr2g0163221
rosa_laevigata	RLG00000021385
rosa_multiflora	Rmu_sc0000979.1_g000009 Rmu_sc0002045.1_g000011 Rmu_sc0021084.1_g000007
rosa_roxburghii	Rroxscaffold_2G00087450
rosa_rugosa	Rorug02G0501300 Rorug02G0501400 Rorug02G0501500 Rorug02G0501600 Rorug02G0501600
rosa_samantha	Rh2AG568500 Rh2BG580400 Rh2CG550200 Rh2DG590300
rosa_wichuraiana	Rw1G013840 Rw2G047010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	63
AccB1I	GGYRCC	1 cut(s)	880
AccB7I	CCANNNNNTGG	1 cut(s)	263
AccII	CGCG	2 cut(s)	248, 676
AciI	CCGC	2 cut(s)	676, 1014
AclWI	GGATC	1 cut(s)	408
AcoI	YGGCCR	1 cut(s)	663
AcuI	CTGAAG	1 cut(s)	896
AcyI	GRCGYC	2 cut(s)	617, 881
AfaI	GTAC	9 cut(s)	40, 214, 255, 339, 556, 577, 730, 736, 817
AfiI	CCNNNNNNNGG	2 cut(s)	263, 492
AgeI	ACCGGT	1 cut(s)	340
AgsI	TTSAA	5 cut(s)	775, 785, 917, 922, 948
AhlI	ACTAGT	2 cut(s)	557, 731
AluBI	AGCT	7 cut(s)	236, 768, 781, 839, 862, 874, 1121
AluI	AGCT	7 cut(s)	236, 768, 781, 839, 862, 874, 1121
Alw21I	GWGCWC	2 cut(s)	8, 864
AlwI	GGATC	1 cut(s)	408
AoxI	GGCC	3 cut(s)	151, 516, 663
ApeKI	GCWGC	6 cut(s)	277, 496, 650, 653, 954, 957
AseI	ATTAAT	1 cut(s)	966
AsiGI	ACCGGT	1 cut(s)	340
AspLEI	GCGC	1 cut(s)	883
AspS9I	GGNCC	1 cut(s)	203
AsuC2I	CCSGG	2 cut(s)	201, 810
AsuHPI	GGTGA	3 cut(s)	189, 343, 1106
AvaII	GGWCC	1 cut(s)	203
BalI	TGGCCA	1 cut(s)	665
BanI	GGYRCC	1 cut(s)	880
BanII	GRGCYC	2 cut(s)	746, 864
BarI	GAAGNNNNNNTAC	2 cut(s)	553, 585
BbsI	GAAGAC	1 cut(s)	1015
Bbv12I	GWGCWC	2 cut(s)	8, 864
BbvI	GCAGC	6 cut(s)	289, 483, 637, 640, 941, 969
BccI	CCATC	3 cut(s)	265, 428, 527
BceAI	ACGGC	2 cut(s)	868, 1092
BclI	TGATCA	2 cut(s)	163, 1084
BcnI	CCSGG	2 cut(s)	201, 810
BcuI	ACTAGT	2 cut(s)	557, 731
BfaI	CTAG	8 cut(s)	461, 530, 558, 573, 687, 732, 942, 1035
BfmI	CTRYAG	2 cut(s)	754, 955
BfoI	RGCGCY	1 cut(s)	884
BglII	AGATCT	2 cut(s)	375, 750
BisI	GCNGC	7 cut(s)	278, 497, 651, 654, 955, 958, 1015
BlpI	GCTNAGC	1 cut(s)	500
BlsI	GCNGC	7 cut(s)	279, 498, 652, 655, 956, 959, 1016
BmcAI	AGTACT	4 cut(s)	214, 556, 577, 730
Bme1390I	CCNGG	2 cut(s)	201, 810
Bme18I	GGWCC	1 cut(s)	203
BmgT120I	GGNCC	1 cut(s)	203
BmiI	GGNNCC	3 cut(s)	743, 882, 939
BmrFI	CCNGG	2 cut(s)	201, 810
BmsI	GCATC	1 cut(s)	680
BpiI	GAAGAC	1 cut(s)	1015
BplI	GAGNNNNNCTC	2 cut(s)	730, 762
BpmI	CTGGAG	1 cut(s)	285
Bpu1102I	GCTNAGC	1 cut(s)	500
BpuEI	CTTGAG	1 cut(s)	105
BpuMI	CCSGG	2 cut(s)	201, 810
BsaHI	GRCGYC	2 cut(s)	617, 881
BsaWI	WCCGGW	2 cut(s)	205, 340
Bsc4I	CCNNNNNNNGG	2 cut(s)	263, 492
Bse118I	RCCGGY	2 cut(s)	340, 363
Bse1I	ACTGG	2 cut(s)	497, 760
BseGI	GGATG	1 cut(s)	307
BseLI	CCNNNNNNNGG	2 cut(s)	263, 492
BseMII	CTCAG	3 cut(s)	401, 514, 761
BseNI	ACTGG	2 cut(s)	497, 760
BseRI	GAGGAG	5 cut(s)	70, 73, 246, 646, 754
BseXI	GCAGC	6 cut(s)	289, 483, 637, 640, 941, 969
BsgI	GTGCAG	1 cut(s)	745
Bsh1236I	CGCG	2 cut(s)	248, 676
Bsh1285I	CGRYCG	1 cut(s)	252
BshFI	GGCC	3 cut(s)	153, 518, 665
BshNI	GGYRCC	1 cut(s)	880
BshTI	ACCGGT	1 cut(s)	340
BsiEI	CGRYCG	1 cut(s)	252
BsiHKAI	GWGCWC	2 cut(s)	8, 864
BsiSI	CCGG	5 cut(s)	201, 206, 341, 364, 809
BslFI	GGGAC	1 cut(s)	1019
BslI	CCNNNNNNNGG	2 cut(s)	263, 492
BsmFI	GGGAC	1 cut(s)	1019
BsmI	GAATGC	1 cut(s)	988
BsnI	GGCC	3 cut(s)	153, 518, 665
Bsp1286I	GDGCHC	3 cut(s)	8, 746, 864
Bsp143I	GATC	8 cut(s)	163, 249, 375, 400, 445, 750, 904, 1084
Bsp1720I	GCTNAGC	1 cut(s)	500
BspACI	CCGC	2 cut(s)	676, 1014
BspANI	GGCC	3 cut(s)	153, 518, 665
BspCNI	CTCAG	3 cut(s)	400, 513, 760
BspFNI	CGCG	2 cut(s)	248, 676
BspHI	TCATGA	2 cut(s)	847, 901
BspLI	GGNNCC	3 cut(s)	743, 882, 939
BspMAI	CTGCAG	1 cut(s)	959
BspPI	GGATC	1 cut(s)	408
BspQI	GCTCTTC	1 cut(s)	13
BspT107I	GGYRCC	1 cut(s)	880
BsrFI	RCCGGY	2 cut(s)	340, 363
BsrI	ACTGG	2 cut(s)	497, 760
BssAI	RCCGGY	2 cut(s)	340, 363
BssMI	GATC	8 cut(s)	163, 249, 375, 400, 445, 750, 904, 1084
BssNI	GRCGYC	2 cut(s)	617, 881
Bst4CI	ACNGT	3 cut(s)	43, 554, 587
Bst6I	CTCTTC	3 cut(s)	13, 91, 117
BstACI	GRCGYC	2 cut(s)	617, 881
BstC8I	GCNNGC	2 cut(s)	478, 678
BstDEI	CTNAG	5 cut(s)	324, 387, 487, 500, 747
BstF5I	GGATG	1 cut(s)	307
BstFNI	CGCG	2 cut(s)	248, 676
BstH2I	RGCGCY	1 cut(s)	884
BstHHI	GCGC	1 cut(s)	883
BstKTI	GATC	8 cut(s)	166, 252, 378, 403, 448, 753, 907, 1087
BstMBI	GATC	8 cut(s)	163, 249, 375, 400, 445, 750, 904, 1084
BstMCI	CGRYCG	1 cut(s)	252
BstMWI	GCNNNNNNNGC	5 cut(s)	150, 662, 677, 765, 880
BstNSI	RCATGY	2 cut(s)	791, 1032
BstSCI	CCNGG	2 cut(s)	199, 808
BstSFI	CTRYAG	2 cut(s)	754, 955
BstUI	CGCG	2 cut(s)	248, 676
BstV1I	GCAGC	6 cut(s)	289, 483, 637, 640, 941, 969
BstV2I	GAAGAC	1 cut(s)	1015
BstX2I	RGATCY	2 cut(s)	375, 750
BstYI	RGATCY	2 cut(s)	375, 750
BsuRI	GGCC	3 cut(s)	153, 518, 665
BtgZI	GCGATG	1 cut(s)	657
BtsCI	GGATG	1 cut(s)	307
BtsI	GCAGTG	1 cut(s)	1024
BtsIMutI	CAGTG	1 cut(s)	1024
Cac8I	GCNNGC	2 cut(s)	478, 678
CciI	TCATGA	2 cut(s)	847, 901
CfoI	GCGC	1 cut(s)	883
Cfr10I	RCCGGY	2 cut(s)	340, 363
Cfr13I	GGNCC	1 cut(s)	203
CpoI	CGGWCCG	1 cut(s)	203
CseI	GACGC	1 cut(s)	606
Csp6I	GTAC	9 cut(s)	39, 213, 254, 338, 555, 576, 729, 735, 816
CspAI	ACCGGT	1 cut(s)	340
CspI	CGGWCCG	1 cut(s)	203
CviAII	CATG	7 cut(s)	161, 788, 848, 902, 1029, 1060, 1103
CviQI	GTAC	9 cut(s)	39, 213, 254, 338, 555, 576, 729, 735, 816
DdeI	CTNAG	5 cut(s)	324, 387, 487, 500, 747
DinI	GGCGCC	1 cut(s)	882
DpnI	GATC	8 cut(s)	165, 251, 377, 402, 447, 752, 906, 1086
DpnII	GATC	8 cut(s)	163, 249, 375, 400, 445, 750, 904, 1084
EaeI	YGGCCR	1 cut(s)	663
Eam1104I	CTCTTC	3 cut(s)	13, 91, 117
EarI	CTCTTC	3 cut(s)	13, 91, 117
Ecl136II	GAGCTC	1 cut(s)	862
Eco24I	GRGCYC	2 cut(s)	746, 864
Eco32I	GATATC	1 cut(s)	1099
Eco47I	GGWCC	1 cut(s)	203
Eco53kI	GAGCTC	1 cut(s)	862
Eco57I	CTGAAG	1 cut(s)	896
EcoICRI	GAGCTC	1 cut(s)	862
EcoRV	GATATC	1 cut(s)	1099
EcoT38I	GRGCYC	2 cut(s)	746, 864
EgeI	GGCGCC	1 cut(s)	882
EheI	GGCGCC	1 cut(s)	882
FaeI	CATG	7 cut(s)	164, 791, 851, 905, 1032, 1063, 1106
FaqI	GGGAC	1 cut(s)	1019
FatI	CATG	7 cut(s)	160, 787, 847, 901, 1028, 1059, 1102
FauI	CCCGC	1 cut(s)	669
FbaI	TGATCA	2 cut(s)	163, 1084
Fnu4HI	GCNGC	7 cut(s)	278, 497, 651, 654, 955, 958, 1015
FokI	GGATG	1 cut(s)	294
FriOI	GRGCYC	2 cut(s)	746, 864
Fsp4HI	GCNGC	7 cut(s)	278, 497, 651, 654, 955, 958, 1015
FspBI	CTAG	8 cut(s)	461, 530, 558, 573, 687, 732, 942, 1035
GlaI	GCGC	1 cut(s)	882
GluI	GCNGC	7 cut(s)	278, 497, 651, 654, 955, 958, 1015
GsuI	CTGGAG	1 cut(s)	285
HaeII	RGCGCY	1 cut(s)	884
HaeIII	GGCC	3 cut(s)	153, 518, 665
HapII	CCGG	5 cut(s)	201, 206, 341, 364, 809
HgaI	GACGC	1 cut(s)	606
HhaI	GCGC	1 cut(s)	883
Hin1I	GRCGYC	2 cut(s)	617, 881
Hin1II	CATG	7 cut(s)	164, 791, 851, 905, 1032, 1063, 1106
Hin6I	GCGC	1 cut(s)	881
HinP1I	GCGC	1 cut(s)	881
HinfI	GANTC	3 cut(s)	414, 851, 1063
HpaII	CCGG	5 cut(s)	201, 206, 341, 364, 809
HphI	GGTGA	3 cut(s)	189, 343, 1106
Hpy166II	GTNNAC	1 cut(s)	818
Hpy188I	TCNGA	6 cut(s)	230, 405, 583, 622, 750, 981
Hpy188III	TCNNGA	4 cut(s)	122, 264, 848, 902
Hpy8I	GTNNAC	1 cut(s)	818
HpyAV	CCTTC	2 cut(s)	637, 871
HpyCH4III	ACNGT	3 cut(s)	43, 554, 587
HpyCH4V	TGCA	5 cut(s)	546, 726, 791, 957, 986
HpyF10VI	GCNNNNNNNGC	5 cut(s)	150, 662, 677, 765, 880
HpyF3I	CTNAG	5 cut(s)	324, 387, 487, 500, 747
Hsp92I	GRCGYC	2 cut(s)	617, 881
Hsp92II	CATG	7 cut(s)	164, 791, 851, 905, 1032, 1063, 1106
HspAI	GCGC	1 cut(s)	881
KasI	GGCGCC	1 cut(s)	880
Ksp22I	TGATCA	2 cut(s)	163, 1084
Kzo9I	GATC	8 cut(s)	163, 249, 375, 400, 445, 750, 904, 1084
LguI	GCTCTTC	1 cut(s)	13
LmnI	GCTCC	2 cut(s)	233, 741
Lsp1109I	GCAGC	6 cut(s)	289, 483, 637, 640, 941, 969
LweI	GCATC	1 cut(s)	680
MaeI	CTAG	8 cut(s)	461, 530, 558, 573, 687, 732, 942, 1035
MaeIII	GTNAC	1 cut(s)	195
MalI	GATC	8 cut(s)	165, 251, 377, 402, 447, 752, 906, 1086
MboI	GATC	8 cut(s)	163, 249, 375, 400, 445, 750, 904, 1084
MfeI	CAATTG	1 cut(s)	184
MflI	RGATCY	2 cut(s)	375, 750
MhlI	GDGCHC	3 cut(s)	8, 746, 864
MlsI	TGGCCA	1 cut(s)	665
MluNI	TGGCCA	1 cut(s)	665
Mly113I	GGCGCC	1 cut(s)	881
MlyI	GAGTC	2 cut(s)	408, 860
Mox20I	TGGCCA	1 cut(s)	665
MscI	TGGCCA	1 cut(s)	665
MseI	TTAA	3 cut(s)	179, 966, 1068
MslI	CAYNNNNRTG	1 cut(s)	1058
Msp20I	TGGCCA	1 cut(s)	665
MspA1I	CMGCKG	1 cut(s)	1014
MspI	CCGG	5 cut(s)	201, 206, 341, 364, 809
MspR9I	CCNGG	2 cut(s)	201, 810
MunI	CAATTG	1 cut(s)	184
Mva1269I	GAATGC	1 cut(s)	988
MvnI	CGCG	2 cut(s)	248, 676
MwoI	GCNNNNNNNGC	5 cut(s)	150, 662, 677, 765, 880
NarI	GGCGCC	1 cut(s)	881
NciI	CCSGG	2 cut(s)	201, 810
NdeII	GATC	8 cut(s)	163, 249, 375, 400, 445, 750, 904, 1084
NlaIII	CATG	7 cut(s)	164, 791, 851, 905, 1032, 1063, 1106
NlaIV	GGNNCC	3 cut(s)	743, 882, 939
NmuCI	GTSAC	1 cut(s)	195
NspI	RCATGY	2 cut(s)	791, 1032
PagI	TCATGA	2 cut(s)	847, 901
PciSI	GCTCTTC	1 cut(s)	13
PcsI	WCGNNNNNNNCGW	1 cut(s)	618
PctI	GAATGC	1 cut(s)	988
PfeI	GAWTC	1 cut(s)	1063
PflMI	CCANNNNNTGG	1 cut(s)	263
PinAI	ACCGGT	1 cut(s)	340
PkrI	GCNGC	7 cut(s)	279, 498, 652, 655, 956, 959, 1016
Ple19I	CGATCG	1 cut(s)	252
PleI	GAGTC	2 cut(s)	408, 859
PluTI	GGCGCC	1 cut(s)	884
PpsI	GAGTC	2 cut(s)	408, 859
PshBI	ATTAAT	1 cut(s)	966
PsiI	TTATAA	1 cut(s)	63
Psp124BI	GAGCTC	1 cut(s)	864
PspN4I	GGNNCC	3 cut(s)	743, 882, 939
PspPI	GGNCC	1 cut(s)	203
PstI	CTGCAG	1 cut(s)	959
PsuI	RGATCY	2 cut(s)	375, 750
PvuI	CGATCG	1 cut(s)	252
RsaI	GTAC	9 cut(s)	40, 214, 255, 339, 556, 577, 730, 736, 817
RsaNI	GTAC	9 cut(s)	39, 213, 254, 338, 555, 576, 729, 735, 816
RseI	CAYNNNNRTG	1 cut(s)	1058
Rsr2I	CGGWCCG	1 cut(s)	203
RsrII	CGGWCCG	1 cut(s)	203
SacI	GAGCTC	1 cut(s)	864
SapI	GCTCTTC	1 cut(s)	13
SaqAI	TTAA	3 cut(s)	179, 966, 1068
SatI	GCNGC	7 cut(s)	278, 497, 651, 654, 955, 958, 1015
Sau3AI	GATC	8 cut(s)	163, 249, 375, 400, 445, 750, 904, 1084
Sau96I	GGNCC	1 cut(s)	203
ScaI	AGTACT	4 cut(s)	214, 556, 577, 730
SchI	GAGTC	2 cut(s)	408, 860
ScrFI	CCNGG	2 cut(s)	201, 810
SduI	GDGCHC	3 cut(s)	8, 746, 864
SfaNI	GCATC	1 cut(s)	680
SfcI	CTRYAG	2 cut(s)	754, 955
SfoI	GGCGCC	1 cut(s)	882
SinI	GGWCC	1 cut(s)	203
SmiMI	CAYNNNNRTG	1 cut(s)	1058
SmlI	CTYRAG	1 cut(s)	120
SmoI	CTYRAG	1 cut(s)	120
SpeI	ACTAGT	2 cut(s)	557, 731
SsiI	CCGC	2 cut(s)	676, 1014
SspDI	GGCGCC	1 cut(s)	880
SspI	AATATT	1 cut(s)	301
SspMI	CTAG	8 cut(s)	461, 530, 558, 573, 687, 732, 942, 1035
SstI	GAGCTC	1 cut(s)	864
StyD4I	CCNGG	2 cut(s)	199, 808
TaaI	ACNGT	3 cut(s)	43, 554, 587
TaqI	TCGA	2 cut(s)	444, 907
TatI	WGTACW	5 cut(s)	212, 554, 575, 728, 815
TauI	GCSGC	1 cut(s)	1017
TfiI	GAWTC	1 cut(s)	1063
Tru1I	TTAA	3 cut(s)	179, 966, 1068
Tru9I	TTAA	3 cut(s)	179, 966, 1068
TscAI	CASTG	1 cut(s)	1024
TseFI	GTSAC	1 cut(s)	195
TseI	GCWGC	6 cut(s)	277, 496, 650, 653, 954, 957
Tsp45I	GTSAC	1 cut(s)	195
TspDTI	ATGAA	4 cut(s)	228, 656, 812, 1076
TspGWI	ACGGA	1 cut(s)	950
TspRI	CASTG	1 cut(s)	1024
Van91I	CCANNNNNTGG	1 cut(s)	263
VpaK11BI	GGWCC	1 cut(s)	203
VspI	ATTAAT	1 cut(s)	966
XceI	RCATGY	2 cut(s)	791, 1032
XcmI	CCANNNNNNNNNTGG	1 cut(s)	281
XspI	CTAG	8 cut(s)	461, 530, 558, 573, 687, 732, 942, 1035
ZrmI	AGTACT	4 cut(s)	214, 556, 577, 730

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.