Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0005284

Physical Location & Seq

Genomic Coordinates Reverse (-)

5918494 .. 5919692

Gene Structure 1199 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1073600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGTTTTCATCTTCCTGTTGTAATAGCAATACTGTAAGTCCTTTTCAACCTAACTTTCCCTTTCCTTCTACAAATCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTCCTTGTGTTAACCTAGTAACCTGCACTGGAGAGATTTTGTTTCACCACATTCATGATTCCCTCTGTGGTCAATTTTCACACCAAAATATTTCTTTAATGGGCCCCTCTGCTCATCAAACCCTAACCCATTTGGGAGTTTCATCAAACACTGTTCCTCCTAGTATAAATGCCCCCGCATCTTGTGGAGATCATCATCATCATCAGTACAGTAACTATGGTCGCATTGGTAGTGATAATATTACTCCTTATTTTCTTCATTCCACTAGGCAAGATGTAGTAGTAGCACCGGCGAAGAAAGACCGGCACAGCAAGATCTTCACCGCTCAGGGCTTGAGGGACCGGAGGGTAAGGCTGTCCATCGACGTTTCCCGTCAGTTCTTTGACCTCCAAGACCGGCTAGGGTTTGACACGGCAAGTAAAACCCTAGAGTGGCTACTAAACAAGTCCAGAAAGGCCATCAGGGATCTCGGAACACGGAAGAATAACTTGAGCTGCAGTTCTGAGTGGTCCAAGAGTTTGTCTTCCACTTCCGAGTGCAAGGATGTTGTTCCGGACATAAACGAGGTGGATAATCATGTAGTCAGCAAAGAAAAAGAGATGGTGATGATGAAGTTGAAAGAATCTGAATCTGCCGGGGCTTATGTTGCGAAGGAATCGAGGGCAAAGGCAAGAGCAAGGGCAAGGGAAAGGACAAGAGCAAAAAAGGTTAATTTTGGAGATCATCATGTGAATCAAGAACTGGGATCCCTCTTGGATAATCAAGCTCATCATCATCATTGTCAGGAGGAGGATCAATCTGCTTTGATCAAAAGAAACAAAATGAAGTTATCGGTAGTTTCAAATTATAATACTACTGATCAGAGTTCCAGCAGCAGCTACCTCCAATTTACCAATTCATCTCAATATTGGGACATCAATGGCTCGTTCCCCATGCCCGAGCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0009908 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

352

Amino Acids

39.27

Weight (kDa)

8.67

Isoelectric Point (pI)

55.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TCP	PF03634	134 - 272	9.9e-42	TCP family transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005284)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67260 AT1G67260 AT1G67260
fragaria_vesca	FvH4_6g45410 FvH4_6g45410
malus_domestica	MD09G1083300.v1.1 MD09G1083500.v1.1 MD17G1073600.v1.1
prunus_persica	Prupe.3G240200_v2.0.a1
pyrus_communis	pycom09g00970 pycom17g07450
rosa_chinensis	RchiOBHm_Chr1g0342441 RchiOBHm_Chr2g0163221
rosa_laevigata	RLG00000021385
rosa_multiflora	Rmu_sc0000979.1_g000009 Rmu_sc0002045.1_g000011 Rmu_sc0021084.1_g000007
rosa_roxburghii	Rroxscaffold_2G00087450
rosa_rugosa	Rorug02G0501300 Rorug02G0501400 Rorug02G0501500 Rorug02G0501600 Rorug02G0501600
rosa_samantha	Rh2AG568500 Rh2BG580400 Rh2CG550200 Rh2DG590300
rosa_wichuraiana	Rw1G013840 Rw2G047010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	957
Acc36I	ACCTGC	1 cut(s)	140
AccBSI	CCGCTC	1 cut(s)	434
AccIII	TCCGGA	1 cut(s)	661
AciI	CCGC	2 cut(s)	285, 432
AclWI	GGATC	4 cut(s)	582, 849, 862, 909
AfaI	GTAC	1 cut(s)	317
AfiI	CCNNNNNNNGG	1 cut(s)	540
AgsI	TTSAA	3 cut(s)	47, 727, 951
AluBI	AGCT	3 cut(s)	603, 875, 987
AluI	AGCT	3 cut(s)	603, 875, 987
AlwI	GGATC	4 cut(s)	582, 849, 862, 909
Ama87I	CYCGRG	1 cut(s)	1046
Aor13HI	TCCGGA	1 cut(s)	661
AoxI	GGCC	2 cut(s)	211, 564
ApaI	GGGCCC	1 cut(s)	215
ApeKI	GCWGC	3 cut(s)	603, 981, 984
AspS9I	GGNCC	4 cut(s)	211, 212, 448, 618
AsuC2I	CCSGG	1 cut(s)	745
AsuHPI	GGTGA	3 cut(s)	146, 421, 724
AvaI	CYCGRG	1 cut(s)	1046
AvaII	GGWCC	2 cut(s)	448, 618
BaeGI	GKGCMC	1 cut(s)	215
BamHI	GGATCC	1 cut(s)	854
BanII	GRGCYC	1 cut(s)	215
BbsI	GAAGAC	1 cut(s)	624
BbvI	GCAGC	3 cut(s)	590, 993, 996
BccI	CCATC	3 cut(s)	476, 575, 703
BceAI	ACGGC	1 cut(s)	537
BclI	TGATCA	2 cut(s)	915, 967
BcnI	CCSGG	1 cut(s)	745
BfaI	CTAG	5 cut(s)	125, 270, 375, 509, 536
BfmI	CTRYAG	1 cut(s)	604
BfuAI	ACCTGC	1 cut(s)	140
BglII	AGATCT	1 cut(s)	423
BisI	GCNGC	3 cut(s)	604, 982, 985
BlsI	GCNGC	3 cut(s)	605, 983, 986
Bme1390I	CCNGG	1 cut(s)	745
Bme18I	GGWCC	2 cut(s)	448, 618
BmeT110I	CYCGRG	1 cut(s)	1046
BmgT120I	GGNCC	4 cut(s)	211, 212, 448, 618
BmiI	GGNNCC	4 cut(s)	213, 214, 449, 856
BmrFI	CCNGG	1 cut(s)	745
BmrI	ACTGGG	1 cut(s)	860
BmsI	GCATC	1 cut(s)	296
BmuI	ACTGGG	1 cut(s)	860
BpiI	GAAGAC	1 cut(s)	624
BpmI	CTGGAG	1 cut(s)	159
Bpu10I	CCTNAGC	1 cut(s)	435
BpuEI	CTTGAG	2 cut(s)	463, 619
BpuMI	CCSGG	1 cut(s)	745
BsaBI	GATNNNNATC	1 cut(s)	303
BsaJI	CCNNGG	1 cut(s)	744
BsaWI	WCCGGW	2 cut(s)	450, 661
BsaXI	ACNNNNNCTCC	4 cut(s)	61, 91, 250, 280
Bsc4I	CCNNNNNNNGG	1 cut(s)	540
Bse118I	RCCGGY	3 cut(s)	397, 411, 504
Bse1I	ACTGG	2 cut(s)	142, 855
Bse8I	GATNNNNATC	1 cut(s)	303
BseAI	TCCGGA	1 cut(s)	661
BseDI	CCNNGG	1 cut(s)	744
BseGI	GGATG	1 cut(s)	658
BseJI	GATNNNNATC	1 cut(s)	303
BseLI	CCNNNNNNNGG	1 cut(s)	540
BseMII	CTCAG	2 cut(s)	449, 603
BseNI	ACTGG	2 cut(s)	142, 855
BseSI	GKGCMC	1 cut(s)	215
BseXI	GCAGC	3 cut(s)	590, 993, 996
BsgI	GTGCAG	1 cut(s)	118
BshFI	GGCC	2 cut(s)	213, 566
BsiHKCI	CYCGRG	1 cut(s)	1046
BsiSI	CCGG	6 cut(s)	398, 412, 451, 505, 662, 744
BslFI	GGGAC	2 cut(s)	461, 1034
BslI	CCNNNNNNNGG	1 cut(s)	540
BsmFI	GGGAC	2 cut(s)	461, 1034
BsnI	GGCC	2 cut(s)	213, 566
BsoBI	CYCGRG	1 cut(s)	1046
Bsp120I	GGGCCC	1 cut(s)	211
Bsp1286I	GDGCHC	1 cut(s)	215
Bsp13I	TCCGGA	1 cut(s)	661
Bsp143I	GATC	8 cut(s)	298, 423, 574, 829, 854, 901, 915, 967
BspACI	CCGC	2 cut(s)	285, 432
BspANI	GGCC	2 cut(s)	213, 566
BspCNI	CTCAG	2 cut(s)	448, 604
BspEI	TCCGGA	1 cut(s)	661
BspHI	TCATGA	1 cut(s)	163
BspLI	GGNNCC	4 cut(s)	213, 214, 449, 856
BspMAI	CTGCAG	1 cut(s)	608
BspMI	ACCTGC	1 cut(s)	140
BspPI	GGATC	4 cut(s)	582, 849, 862, 909
BsrBI	CCGCTC	1 cut(s)	434
BsrFI	RCCGGY	3 cut(s)	397, 411, 504
BsrI	ACTGG	2 cut(s)	142, 855
BssAI	RCCGGY	3 cut(s)	397, 411, 504
BssECI	CCNNGG	1 cut(s)	744
BssMI	GATC	8 cut(s)	298, 423, 574, 829, 854, 901, 915, 967
Bst4CI	ACNGT	3 cut(s)	34, 262, 320
BstDEI	CTNAG	2 cut(s)	435, 612
BstF5I	GGATG	1 cut(s)	658
BstKTI	GATC	8 cut(s)	301, 426, 577, 832, 857, 904, 918, 970
BstMBI	GATC	8 cut(s)	298, 423, 574, 829, 854, 901, 915, 967
BstMWI	GCNNNNNNNGC	1 cut(s)	755
BstSCI	CCNGG	1 cut(s)	743
BstSFI	CTRYAG	1 cut(s)	604
BstSLI	GKGCMC	1 cut(s)	215
BstV1I	GCAGC	3 cut(s)	590, 993, 996
BstV2I	GAAGAC	1 cut(s)	624
BstX2I	RGATCY	3 cut(s)	423, 574, 854
BstYI	RGATCY	3 cut(s)	423, 574, 854
BsuRI	GGCC	2 cut(s)	213, 566
BtsCI	GGATG	1 cut(s)	658
BtsIMutI	CAGTG	2 cut(s)	135, 258
BveI	ACCTGC	1 cut(s)	140
CciI	TCATGA	1 cut(s)	163
Cfr10I	RCCGGY	3 cut(s)	397, 411, 504
Cfr13I	GGNCC	4 cut(s)	211, 212, 448, 618
Csp6I	GTAC	1 cut(s)	316
CviAII	CATG	4 cut(s)	164, 686, 836, 1042
CviQI	GTAC	1 cut(s)	316
DdeI	CTNAG	2 cut(s)	435, 612
DpnI	GATC	8 cut(s)	300, 425, 576, 831, 856, 903, 917, 969
DpnII	GATC	8 cut(s)	298, 423, 574, 829, 854, 901, 915, 967
Eco24I	GRGCYC	1 cut(s)	215
Eco47I	GGWCC	2 cut(s)	448, 618
Eco88I	CYCGRG	1 cut(s)	1046
EcoO109I	RGGNCCY	1 cut(s)	212
EcoT38I	GRGCYC	1 cut(s)	215
FaeI	CATG	4 cut(s)	167, 689, 839, 1045
FaiI	YATR	9 cut(s)	165, 275, 327, 668, 687, 753, 837, 957, 1043
FalI	AAGNNNNNCTT	2 cut(s)	581, 613
FaqI	GGGAC	2 cut(s)	461, 1034
FatI	CATG	4 cut(s)	163, 685, 835, 1041
FauI	CCCGC	1 cut(s)	292
FbaI	TGATCA	2 cut(s)	915, 967
Fnu4HI	GCNGC	3 cut(s)	604, 982, 985
FokI	GGATG	1 cut(s)	665
FriOI	GRGCYC	1 cut(s)	215
Fsp4HI	GCNGC	3 cut(s)	604, 982, 985
FspBI	CTAG	5 cut(s)	125, 270, 375, 509, 536
GluI	GCNGC	3 cut(s)	604, 982, 985
GsuI	CTGGAG	1 cut(s)	159
HaeIII	GGCC	2 cut(s)	213, 566
HapII	CCGG	6 cut(s)	398, 412, 451, 505, 662, 744
Hin1II	CATG	4 cut(s)	167, 689, 839, 1045
HincII	GTYRAC	1 cut(s)	121
HindII	GTYRAC	1 cut(s)	121
HinfI	GANTC	5 cut(s)	167, 731, 737, 764, 841
HpaI	GTTAAC	1 cut(s)	121
HpaII	CCGG	6 cut(s)	398, 412, 451, 505, 662, 744
HphI	GGTGA	3 cut(s)	146, 421, 724
Hpy166II	GTNNAC	1 cut(s)	121
Hpy188I	TCNGA	5 cut(s)	581, 613, 643, 736, 972
Hpy188III	TCNNGA	5 cut(s)	164, 558, 662, 845, 893
Hpy8I	GTNNAC	1 cut(s)	121
Hpy99I	CGWCG	1 cut(s)	476
HpyAV	CCTTC	3 cut(s)	75, 117, 754
HpyCH4III	ACNGT	3 cut(s)	34, 262, 320
HpyCH4IV	ACGT	1 cut(s)	474
HpyCH4V	TGCA	3 cut(s)	135, 606, 648
HpyF10VI	GCNNNNNNNGC	1 cut(s)	755
HpyF3I	CTNAG	2 cut(s)	435, 612
HpySE526I	ACGT	1 cut(s)	474
Hsp92II	CATG	4 cut(s)	167, 689, 839, 1045
Kpn2I	TCCGGA	1 cut(s)	661
Ksp22I	TGATCA	2 cut(s)	915, 967
KspAI	GTTAAC	1 cut(s)	121
Kzo9I	GATC	8 cut(s)	298, 423, 574, 829, 854, 901, 915, 967
Lsp1109I	GCAGC	3 cut(s)	590, 993, 996
LweI	GCATC	1 cut(s)	296
MaeI	CTAG	5 cut(s)	125, 270, 375, 509, 536
MaeII	ACGT	1 cut(s)	474
MaeIII	GTNAC	2 cut(s)	127, 320
MalI	GATC	8 cut(s)	300, 425, 576, 831, 856, 903, 917, 969
MbiI	CCGCTC	1 cut(s)	434
MboI	GATC	8 cut(s)	298, 423, 574, 829, 854, 901, 915, 967
MboII	GAAGA	6 cut(s)	3, 356, 415, 418, 601, 624
MflI	RGATCY	3 cut(s)	423, 574, 854
MhlI	GDGCHC	1 cut(s)	215
MluCI	AATT	5 cut(s)	182, 820, 952, 995, 1003
MroI	TCCGGA	1 cut(s)	661
MseI	TTAA	4 cut(s)	120, 206, 819, 1054
MslI	CAYNNNNRTG	1 cut(s)	162
MspI	CCGG	6 cut(s)	398, 412, 451, 505, 662, 744
MspR9I	CCNGG	1 cut(s)	745
MwoI	GCNNNNNNNGC	1 cut(s)	755
NciI	CCSGG	1 cut(s)	745
NdeII	GATC	8 cut(s)	298, 423, 574, 829, 854, 901, 915, 967
NlaIII	CATG	4 cut(s)	167, 689, 839, 1045
NlaIV	GGNNCC	4 cut(s)	213, 214, 449, 856
PagI	TCATGA	1 cut(s)	163
PfeI	GAWTC	5 cut(s)	167, 731, 737, 764, 841
PkrI	GCNGC	3 cut(s)	605, 983, 986
PsiI	TTATAA	1 cut(s)	957
PspN4I	GGNNCC	4 cut(s)	213, 214, 449, 856
PspOMI	GGGCCC	1 cut(s)	211
PspPI	GGNCC	4 cut(s)	211, 212, 448, 618
PstI	CTGCAG	1 cut(s)	608
PsuI	RGATCY	3 cut(s)	423, 574, 854
RsaI	GTAC	1 cut(s)	317
RsaNI	GTAC	1 cut(s)	316
RseI	CAYNNNNRTG	1 cut(s)	162
SaqAI	TTAA	4 cut(s)	120, 206, 819, 1054
SatI	GCNGC	3 cut(s)	604, 982, 985
Sau3AI	GATC	8 cut(s)	298, 423, 574, 829, 854, 901, 915, 967
Sau96I	GGNCC	4 cut(s)	211, 212, 448, 618
ScrFI	CCNGG	1 cut(s)	745
SduI	GDGCHC	1 cut(s)	215
SfaNI	GCATC	1 cut(s)	296
SfcI	CTRYAG	1 cut(s)	604
SgrAI	CRCCGGYG	1 cut(s)	397
SinI	GGWCC	2 cut(s)	448, 618
SmiMI	CAYNNNNRTG	1 cut(s)	162
SmlI	CTYRAG	2 cut(s)	442, 598
SmoI	CTYRAG	2 cut(s)	442, 598
Sse9I	AATT	5 cut(s)	182, 820, 952, 995, 1003
SsiI	CCGC	2 cut(s)	285, 432
SspI	AATATT	3 cut(s)	199, 349, 1016
SspMI	CTAG	5 cut(s)	125, 270, 375, 509, 536
StyD4I	CCNGG	1 cut(s)	743
TaaI	ACNGT	3 cut(s)	34, 262, 320
TaiI	ACGT	1 cut(s)	477
TaqI	TCGA	2 cut(s)	471, 767
TasI	AATT	5 cut(s)	182, 820, 952, 995, 1003
TatI	WGTACW	1 cut(s)	315
TfiI	GAWTC	5 cut(s)	167, 731, 737, 764, 841
Tru1I	TTAA	4 cut(s)	120, 206, 819, 1054
Tru9I	TTAA	4 cut(s)	120, 206, 819, 1054
TscAI	CASTG	2 cut(s)	142, 265
TseI	GCWGC	3 cut(s)	603, 981, 984
TspDTI	ATGAA	6 cut(s)	152, 240, 356, 734, 947, 996
TspGWI	ACGGA	1 cut(s)	601
TspRI	CASTG	2 cut(s)	142, 265
VpaK11BI	GGWCC	2 cut(s)	448, 618
XspI	CTAG	5 cut(s)	125, 270, 375, 509, 536

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.