Rw1G013840

Protein of unknown function (DUF2854)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0005284
Physical Location & Seq
Reverse (-)
30840412 .. 30843061
2650 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G013840.1

Sequence Viewer

Length: 876 bp
ATGGTCAATCTCGGAGGAGCTTCATCAAACGCGATCGTACCATCATCTGGAGGCTACCAGCAGCATTATGGTTATGGTAATAATATTACTCATCCCTATTTTGTTTCTAAGGAGGTGAGAGTACCGGTGGTTGCTGTGAAGAAAGACCGGCACAGCAAGATCTTCACTTCTCAGGGGTTGAGGGATCGGAGGGTAAGACTCTCCATCAATGTTGCCCGTGAGTTCTTCGATCTCCAAGACTTGCTAGGGTTTGACAAAGCCAGCAAAACCTTAGACTGGCTGCTCAGCAATTCCACAAAGGCCATCAAAGACCTAGAAAAGAGCAAGTGCAATAACAGTACTAGTATATCATCTTCTAGTACTTCGGACTGTGATGATGTTTTGGACATAAACAAAGAGGCGTCCGATGACAAGAGGAGGAAGATGAAGGAGGCTGCTGCTATAATGGCCAGAGCATCGCGGGCAAAGGCTAGAGCAAGAGCAAGAGAAAGAACAAGAGAGAAGATGTGCAGTACTAGTACGAGGAGCCCTCAGATCTGTAGCCAGTTGAGCTTGTTCAATGAGCTTGAACATGCAGATATGAATAAAGAACCGGGCAGTACACTCCTATCTAATTGTCAAGCTGAATATCATGAATCTGTTGAGCTCAAAAGAAAGCTGAAGGCGCCGTCAGTTTCCAATTATCATGATCGAAGCCTTGAATTGAACCCCAAAAGCACGGAACCTAGTTCAAATTGCTGCAGCCACATTAATATCCAATTTCCGAATGCAATATCTCAAAATTATTGGGACATCAGCGGCAGTGTCTTCACATGCCCTAGCATTTGTGGCATTACCACCAACATGAATCTTAATTCTACGGCATACTCTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2854 UMP1

Protein Analysis

291

Amino Acids

32.41

Weight (kDa)

9.08

Isoelectric Point (pI)

47.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 46 - 171 1.9e-36 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 664
AccB7I CCANNNNNTGG 1 cut(s) 47
AccII CGCG 2 cut(s) 32, 460
AciI CCGC 2 cut(s) 460, 798
AclWI GGATC 1 cut(s) 192
AcoI YGGCCR 1 cut(s) 447
AcuI CTGAAG 1 cut(s) 680
AcyI GRCGYC 2 cut(s) 401, 665
AfaI GTAC 7 cut(s) 39, 123, 340, 361, 514, 520, 601
AfiI CCNNNNNNNGG 2 cut(s) 47, 276
AgeI ACCGGT 1 cut(s) 124
AgsI TTSAA 5 cut(s) 559, 569, 701, 706, 732
AhlI ACTAGT 2 cut(s) 341, 515
AluBI AGCT 6 cut(s) 20, 552, 565, 623, 646, 658
AluI AGCT 6 cut(s) 20, 552, 565, 623, 646, 658
Alw21I GWGCWC 1 cut(s) 648
AlwI GGATC 1 cut(s) 192
AoxI GGCC 2 cut(s) 300, 447
ApeKI GCWGC 6 cut(s) 61, 280, 434, 437, 738, 741
AseI ATTAAT 1 cut(s) 750
AsiGI ACCGGT 1 cut(s) 124
AspLEI GCGC 1 cut(s) 667
AsuC2I CCSGG 1 cut(s) 594
AsuHPI GGTGA 1 cut(s) 127
BalI TGGCCA 1 cut(s) 449
BanI GGYRCC 1 cut(s) 664
BanII GRGCYC 2 cut(s) 530, 648
BarI GAAGNNNNNNTAC 2 cut(s) 337, 369
BbsI GAAGAC 1 cut(s) 799
Bbv12I GWGCWC 1 cut(s) 648
BbvI GCAGC 6 cut(s) 73, 267, 421, 424, 725, 753
BccI CCATC 3 cut(s) 49, 212, 311
BceAI ACGGC 1 cut(s) 652
BcnI CCSGG 1 cut(s) 594
BcuI ACTAGT 2 cut(s) 341, 515
BfaI CTAG 8 cut(s) 245, 314, 342, 357, 471, 516, 726, 819
BfmI CTRYAG 2 cut(s) 538, 739
BfoI RGCGCY 1 cut(s) 668
BglII AGATCT 2 cut(s) 159, 534
BisI GCNGC 7 cut(s) 62, 281, 435, 438, 739, 742, 799
BlpI GCTNAGC 1 cut(s) 284
BlsI GCNGC 7 cut(s) 63, 282, 436, 439, 740, 743, 800
BmcAI AGTACT 3 cut(s) 340, 361, 514
Bme1390I CCNGG 1 cut(s) 594
BmiI GGNNCC 3 cut(s) 527, 666, 723
BmrFI CCNGG 1 cut(s) 594
BmsI GCATC 1 cut(s) 464
BpiI GAAGAC 1 cut(s) 799
BplI GAGNNNNNCTC 2 cut(s) 514, 546
BpmI CTGGAG 1 cut(s) 69
Bpu1102I GCTNAGC 1 cut(s) 284
BpuMI CCSGG 1 cut(s) 594
BsaHI GRCGYC 2 cut(s) 401, 665
BsaWI WCCGGW 1 cut(s) 124
Bsc4I CCNNNNNNNGG 2 cut(s) 47, 276
Bse118I RCCGGY 2 cut(s) 124, 147
Bse1I ACTGG 2 cut(s) 281, 544
BseGI GGATG 1 cut(s) 91
BseLI CCNNNNNNNGG 2 cut(s) 47, 276
BseMII CTCAG 3 cut(s) 185, 298, 545
BseNI ACTGG 2 cut(s) 281, 544
BseRI GAGGAG 3 cut(s) 30, 430, 538
BseXI GCAGC 6 cut(s) 73, 267, 421, 424, 725, 753
BsgI GTGCAG 1 cut(s) 529
Bsh1236I CGCG 2 cut(s) 32, 460
Bsh1285I CGRYCG 1 cut(s) 36
BshFI GGCC 2 cut(s) 302, 449
BshNI GGYRCC 1 cut(s) 664
BshTI ACCGGT 1 cut(s) 124
BsiEI CGRYCG 1 cut(s) 36
BsiHKAI GWGCWC 1 cut(s) 648
BsiSI CCGG 3 cut(s) 125, 148, 593
BslFI GGGAC 1 cut(s) 803
BslI CCNNNNNNNGG 2 cut(s) 47, 276
BsmFI GGGAC 1 cut(s) 803
BsmI GAATGC 1 cut(s) 772
BsnI GGCC 2 cut(s) 302, 449
Bsp1286I GDGCHC 2 cut(s) 530, 648
Bsp143I GATC 6 cut(s) 33, 159, 184, 229, 534, 688
Bsp1720I GCTNAGC 1 cut(s) 284
BspACI CCGC 2 cut(s) 460, 798
BspANI GGCC 2 cut(s) 302, 449
BspCNI CTCAG 3 cut(s) 184, 297, 544
BspFNI CGCG 2 cut(s) 32, 460
BspHI TCATGA 2 cut(s) 631, 685
BspLI GGNNCC 3 cut(s) 527, 666, 723
BspMAI CTGCAG 1 cut(s) 743
BspPI GGATC 1 cut(s) 192
BspT107I GGYRCC 1 cut(s) 664
BsrFI RCCGGY 2 cut(s) 124, 147
BsrI ACTGG 2 cut(s) 281, 544
BssAI RCCGGY 2 cut(s) 124, 147
BssMI GATC 6 cut(s) 33, 159, 184, 229, 534, 688
BssNI GRCGYC 2 cut(s) 401, 665
Bst4CI ACNGT 2 cut(s) 338, 371
BstACI GRCGYC 2 cut(s) 401, 665
BstC8I GCNNGC 2 cut(s) 262, 462
BstDEI CTNAG 5 cut(s) 108, 171, 271, 284, 531
BstF5I GGATG 1 cut(s) 91
BstFNI CGCG 2 cut(s) 32, 460
BstH2I RGCGCY 1 cut(s) 668
BstHHI GCGC 1 cut(s) 667
BstKTI GATC 6 cut(s) 36, 162, 187, 232, 537, 691
BstMBI GATC 6 cut(s) 33, 159, 184, 229, 534, 688
BstMCI CGRYCG 1 cut(s) 36
BstMWI GCNNNNNNNGC 5 cut(s) 446, 461, 549, 664, 828
BstNSI RCATGY 2 cut(s) 575, 816
BstSCI CCNGG 1 cut(s) 592
BstSFI CTRYAG 2 cut(s) 538, 739
BstUI CGCG 2 cut(s) 32, 460
BstV1I GCAGC 6 cut(s) 73, 267, 421, 424, 725, 753
BstV2I GAAGAC 1 cut(s) 799
BstX2I RGATCY 2 cut(s) 159, 534
BstYI RGATCY 2 cut(s) 159, 534
BsuRI GGCC 2 cut(s) 302, 449
BtgZI GCGATG 1 cut(s) 441
BtsCI GGATG 1 cut(s) 91
BtsI GCAGTG 1 cut(s) 808
BtsIMutI CAGTG 1 cut(s) 808
Cac8I GCNNGC 2 cut(s) 262, 462
CciI TCATGA 2 cut(s) 631, 685
CfoI GCGC 1 cut(s) 667
Cfr10I RCCGGY 2 cut(s) 124, 147
CseI GACGC 1 cut(s) 390
Csp6I GTAC 7 cut(s) 38, 122, 339, 360, 513, 519, 600
CspAI ACCGGT 1 cut(s) 124
CviAII CATG 5 cut(s) 572, 632, 686, 813, 844
CviQI GTAC 7 cut(s) 38, 122, 339, 360, 513, 519, 600
DdeI CTNAG 5 cut(s) 108, 171, 271, 284, 531
DinI GGCGCC 1 cut(s) 666
DpnI GATC 6 cut(s) 35, 161, 186, 231, 536, 690
DpnII GATC 6 cut(s) 33, 159, 184, 229, 534, 688
EaeI YGGCCR 1 cut(s) 447
Ecl136II GAGCTC 1 cut(s) 646
Eco24I GRGCYC 2 cut(s) 530, 648
Eco53kI GAGCTC 1 cut(s) 646
Eco57I CTGAAG 1 cut(s) 680
EcoICRI GAGCTC 1 cut(s) 646
EcoT38I GRGCYC 2 cut(s) 530, 648
EgeI GGCGCC 1 cut(s) 666
EheI GGCGCC 1 cut(s) 666
FaeI CATG 5 cut(s) 575, 635, 689, 816, 847
FaqI GGGAC 1 cut(s) 803
FatI CATG 5 cut(s) 571, 631, 685, 812, 843
FauI CCCGC 1 cut(s) 453
Fnu4HI GCNGC 7 cut(s) 62, 281, 435, 438, 739, 742, 799
FokI GGATG 1 cut(s) 78
FriOI GRGCYC 2 cut(s) 530, 648
Fsp4HI GCNGC 7 cut(s) 62, 281, 435, 438, 739, 742, 799
FspBI CTAG 8 cut(s) 245, 314, 342, 357, 471, 516, 726, 819
GlaI GCGC 1 cut(s) 666
GluI GCNGC 7 cut(s) 62, 281, 435, 438, 739, 742, 799
GsuI CTGGAG 1 cut(s) 69
HaeII RGCGCY 1 cut(s) 668
HaeIII GGCC 2 cut(s) 302, 449
HapII CCGG 3 cut(s) 125, 148, 593
HgaI GACGC 1 cut(s) 390
HhaI GCGC 1 cut(s) 667
Hin1I GRCGYC 2 cut(s) 401, 665
Hin1II CATG 5 cut(s) 575, 635, 689, 816, 847
Hin6I GCGC 1 cut(s) 665
HinP1I GCGC 1 cut(s) 665
HinfI GANTC 3 cut(s) 198, 635, 847
HpaII CCGG 3 cut(s) 125, 148, 593
HphI GGTGA 1 cut(s) 127
Hpy166II GTNNAC 1 cut(s) 602
Hpy188I TCNGA 6 cut(s) 14, 189, 367, 406, 534, 765
Hpy188III TCNNGA 3 cut(s) 48, 632, 686
Hpy8I GTNNAC 1 cut(s) 602
HpyAV CCTTC 2 cut(s) 421, 655
HpyCH4III ACNGT 2 cut(s) 338, 371
HpyCH4V TGCA 5 cut(s) 330, 510, 575, 741, 770
HpyF10VI GCNNNNNNNGC 5 cut(s) 446, 461, 549, 664, 828
HpyF3I CTNAG 5 cut(s) 108, 171, 271, 284, 531
Hsp92I GRCGYC 2 cut(s) 401, 665
Hsp92II CATG 5 cut(s) 575, 635, 689, 816, 847
HspAI GCGC 1 cut(s) 665
KasI GGCGCC 1 cut(s) 664
Kzo9I GATC 6 cut(s) 33, 159, 184, 229, 534, 688
LmnI GCTCC 2 cut(s) 17, 525
Lsp1109I GCAGC 6 cut(s) 73, 267, 421, 424, 725, 753
LweI GCATC 1 cut(s) 464
MaeI CTAG 8 cut(s) 245, 314, 342, 357, 471, 516, 726, 819
MalI GATC 6 cut(s) 35, 161, 186, 231, 536, 690
MboI GATC 6 cut(s) 33, 159, 184, 229, 534, 688
MboII GAAGA 7 cut(s) 151, 154, 217, 345, 433, 514, 799
MflI RGATCY 2 cut(s) 159, 534
MhlI GDGCHC 2 cut(s) 530, 648
MlsI TGGCCA 1 cut(s) 449
MluCI AATT 8 cut(s) 289, 613, 679, 701, 733, 758, 781, 853
MluNI TGGCCA 1 cut(s) 449
Mly113I GGCGCC 1 cut(s) 665
MlyI GAGTC 1 cut(s) 192
Mox20I TGGCCA 1 cut(s) 449
MscI TGGCCA 1 cut(s) 449
MseI TTAA 3 cut(s) 750, 852, 874
MslI CAYNNNNRTG 1 cut(s) 842
Msp20I TGGCCA 1 cut(s) 449
MspA1I CMGCKG 1 cut(s) 798
MspI CCGG 3 cut(s) 125, 148, 593
MspR9I CCNGG 1 cut(s) 594
Mva1269I GAATGC 1 cut(s) 772
MvnI CGCG 2 cut(s) 32, 460
MwoI GCNNNNNNNGC 5 cut(s) 446, 461, 549, 664, 828
NarI GGCGCC 1 cut(s) 665
NciI CCSGG 1 cut(s) 594
NdeII GATC 6 cut(s) 33, 159, 184, 229, 534, 688
NlaIII CATG 5 cut(s) 575, 635, 689, 816, 847
NlaIV GGNNCC 3 cut(s) 527, 666, 723
NspI RCATGY 2 cut(s) 575, 816
PagI TCATGA 2 cut(s) 631, 685
PctI GAATGC 1 cut(s) 772
PfeI GAWTC 2 cut(s) 635, 847
PflMI CCANNNNNTGG 1 cut(s) 47
PinAI ACCGGT 1 cut(s) 124
PkrI GCNGC 7 cut(s) 63, 282, 436, 439, 740, 743, 800
Ple19I CGATCG 1 cut(s) 36
PleI GAGTC 1 cut(s) 192
PluTI GGCGCC 1 cut(s) 668
PpsI GAGTC 1 cut(s) 192
PshBI ATTAAT 1 cut(s) 750
Psp124BI GAGCTC 1 cut(s) 648
PspN4I GGNNCC 3 cut(s) 527, 666, 723
PstI CTGCAG 1 cut(s) 743
PsuI RGATCY 2 cut(s) 159, 534
PvuI CGATCG 1 cut(s) 36
RsaI GTAC 7 cut(s) 39, 123, 340, 361, 514, 520, 601
RsaNI GTAC 7 cut(s) 38, 122, 339, 360, 513, 519, 600
RseI CAYNNNNRTG 1 cut(s) 842
SacI GAGCTC 1 cut(s) 648
SaqAI TTAA 3 cut(s) 750, 852, 874
SatI GCNGC 7 cut(s) 62, 281, 435, 438, 739, 742, 799
Sau3AI GATC 6 cut(s) 33, 159, 184, 229, 534, 688
ScaI AGTACT 3 cut(s) 340, 361, 514
SchI GAGTC 1 cut(s) 192
ScrFI CCNGG 1 cut(s) 594
SduI GDGCHC 2 cut(s) 530, 648
SfaNI GCATC 1 cut(s) 464
SfcI CTRYAG 2 cut(s) 538, 739
SfoI GGCGCC 1 cut(s) 666
SmiMI CAYNNNNRTG 1 cut(s) 842
SpeI ACTAGT 2 cut(s) 341, 515
Sse9I AATT 8 cut(s) 289, 613, 679, 701, 733, 758, 781, 853
SsiI CCGC 2 cut(s) 460, 798
SspDI GGCGCC 1 cut(s) 664
SspI AATATT 1 cut(s) 85
SspMI CTAG 8 cut(s) 245, 314, 342, 357, 471, 516, 726, 819
SstI GAGCTC 1 cut(s) 648
StyD4I CCNGG 1 cut(s) 592
TaaI ACNGT 2 cut(s) 338, 371
TaqI TCGA 2 cut(s) 228, 691
TasI AATT 8 cut(s) 289, 613, 679, 701, 733, 758, 781, 853
TatI WGTACW 4 cut(s) 338, 359, 512, 599
TauI GCSGC 1 cut(s) 801
TfiI GAWTC 2 cut(s) 635, 847
Tru1I TTAA 3 cut(s) 750, 852, 874
Tru9I TTAA 3 cut(s) 750, 852, 874
TscAI CASTG 1 cut(s) 808
TseI GCWGC 6 cut(s) 61, 280, 434, 437, 738, 741
TspDTI ATGAA 5 cut(s) 12, 440, 596, 648, 860
TspGWI ACGGA 1 cut(s) 734
TspRI CASTG 1 cut(s) 808
Van91I CCANNNNNTGG 1 cut(s) 47
VspI ATTAAT 1 cut(s) 750
XceI RCATGY 2 cut(s) 575, 816
XcmI CCANNNNNNNNNTGG 1 cut(s) 65
XspI CTAG 8 cut(s) 245, 314, 342, 357, 471, 516, 726, 819
ZrmI AGTACT 3 cut(s) 340, 361, 514
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.