Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005284

Physical Location & Seq

Genomic Coordinates Reverse (-)

63365142 .. 63367728

Gene Structure 2587 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0501400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGGGGCAAGAGGAGCAGAGCACTGTAGGTGTGGAAGAAGAAGAAGAAGAAGAAGAAAGACATGAAATTTCAGAGTCATGGAGCCAAAGGAAGCAAACCCTAATACTCGAAATCTCATCTAAGCTCATCAATGGTGATCTTGAGGCCAAAATTGAAGCCGCCAGAGACATCAGAAACTTGGTCAGAAAGTCTTCTTCTTCCTCCTCCTCCTCTTCTTCTTCTGCGGCCAAGACTCGATTGAAGTTGGGAGCTTCAGGTGTGATTCCACCTTTGGTGACTATGCTGGTCTCTCCTAACCCAGATGCTCGCCAAGCTTCTCTTCTAGCTCTTCTCAACCTCGCTGTTCGCAATGACCGAAACAAAGTCAAGATTGTGACAGCTGGAGCTGTTCCTCCTCTTGTTGAGCTCCTCAAGTTCCAAAACGGTAGCTTAAGGGATTTAGCCACTGCAGCAATCTTAACACTGTCAGCTGTTGCATTGAACAAGCCAATTATTGTGGCTTCTGGAGCTGCACCGCTCCTTGTTCAGATCCTCAGCTCCGGAAGTGTTCAAGGAAAGGTTGATGCCGTGACTGCCCTACACAACCTCTCTTCCTGCAAAGACAATGCGACTCCAATTCTTGATGCTACAGCTGTTCCTCCTCTTATAAACCTCCTCAAAGAATGCAAAAAGTATTCCAAGTTTGCTGAAAAAACTTCTGCCCTTCTCGAAATCCTATCCAACTCAGAAGAAGGGCGCGTTGCAATCTCAAACTTAGAGGGTGGGATCTTAACCTTAGTAGAGACTGTTGAAGATGGATCCATTGTCAGCACAGAACATGCTGTTGGAGCTTTGCTCACTCTATGTGAGAGCTGTCGAGATAAATACCGGGAACTCATTCTTAAAGAAGGTGCAGTCCCGGGCCTTCTGCGGTTGACTGTAGATGGCACAGCTGAAGCTCGGGAGAAAGCTCGTATACTTCTGGATTTGCTTAGAGATTCTCCCCAGGAAAAGCATTTGGCGTCGTCAGTTCTGGAGAGAATTGTATACGACATTGCCACGAGGGTCGATGGAGCTGATAAAGCTGCTGAAACCGCAAAGAGGTTACTGGAAGATATGGTTAAACGAAGCATGGAGCACAGCATGAGCCGCATTCAGCAGAGAGCTGCGTCTTGTACACCTTCTAATATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2854 UMP1

Protein Analysis

390

Amino Acids

41.87

Weight (kDa)

5.76

Isoelectric Point (pI)

51.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARM_ARMC5	PF24768	162 - 311	3.7e-08	ARMC5
ARM_PUB	PF25598	187 - 333	5.2e-16	Plant U-box protein ARM repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005284)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67260 AT1G67260 AT1G67260
fragaria_vesca	FvH4_6g45410 FvH4_6g45410
malus_domestica	MD09G1083300.v1.1 MD09G1083500.v1.1 MD17G1073600.v1.1
prunus_persica	Prupe.3G240200_v2.0.a1
pyrus_communis	pycom09g00970 pycom17g07450
rosa_chinensis	RchiOBHm_Chr1g0342441 RchiOBHm_Chr2g0163221
rosa_laevigata	RLG00000021385
rosa_multiflora	Rmu_sc0000979.1_g000009 Rmu_sc0002045.1_g000011 Rmu_sc0021084.1_g000007
rosa_roxburghii	Rroxscaffold_2G00087450
rosa_rugosa	Rorug02G0501300 Rorug02G0501400 Rorug02G0501500 Rorug02G0501600 Rorug02G0501600
rosa_samantha	Rh2AG568500 Rh2BG580400 Rh2CG550200 Rh2DG590300
rosa_wichuraiana	Rw1G013840 Rw2G047010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	647
AccBSI	CCGCTC	1 cut(s)	517
AccI	GTMKAC	2 cut(s)	955, 1026
AccII	CGCG	1 cut(s)	738
AccIII	TCCGGA	1 cut(s)	539
AciI	CCGC	6 cut(s)	159, 224, 515, 910, 1074, 1129
AclWI	GGATC	4 cut(s)	523, 773, 792, 805
AcoI	YGGCCR	1 cut(s)	225
AcsI	RAATTY	1 cut(s)	66
AcuI	CTGAAG	2 cut(s)	237, 954
AcyI	GRCGYC	1 cut(s)	1001
AfaI	GTAC	1 cut(s)	1156
AfiI	CCNNNNNNNGG	1 cut(s)	1080
AflII	CTTAAG	1 cut(s)	430
AgsI	TTSAA	5 cut(s)	155, 241, 481, 551, 791
AjnI	CCWGG	1 cut(s)	984
AjuI	GAANNNNNNNTTGG	4 cut(s)	303, 335, 807, 839
Alw21I	GWGCWC	3 cut(s)	23, 408, 1119
Alw26I	GTCTC	3 cut(s)	159, 292, 776
AlwI	GGATC	4 cut(s)	523, 773, 792, 805
Ama87I	CYCGRG	2 cut(s)	898, 939
Aor13HI	TCCGGA	1 cut(s)	539
AoxI	GGCC	3 cut(s)	144, 225, 901
ApeKI	GCWGC	4 cut(s)	449, 509, 1064, 1145
ApoI	RAATTY	1 cut(s)	66
Asp700I	GAANNNNTTC	2 cut(s)	190, 876
AspLEI	GCGC	1 cut(s)	738
AspS9I	GGNCC	1 cut(s)	901
AsuC2I	CCSGG	3 cut(s)	869, 899, 900
AsuHPI	GGTGA	2 cut(s)	146, 286
AvaI	CYCGRG	2 cut(s)	898, 939
BamHI	GGATCC	1 cut(s)	797
BanII	GRGCYC	1 cut(s)	408
BauI	CACGAG	1 cut(s)	1039
BbsI	GAAGAC	1 cut(s)	183
Bbv12I	GWGCWC	3 cut(s)	23, 408, 1119
BbvCI	CCTCAGC	1 cut(s)	533
BbvI	GCAGC	4 cut(s)	461, 496, 1051, 1132
BccI	CCATC	3 cut(s)	788, 917, 1043
BceAI	ACGGC	1 cut(s)	551
BciT130I	CCWGG	1 cut(s)	986
BcnI	CCSGG	3 cut(s)	869, 899, 900
BcoDI	GTCTC	3 cut(s)	159, 292, 776
BfaI	CTAG	1 cut(s)	323
BfmI	CTRYAG	4 cut(s)	24, 447, 627, 918
BfrI	CTTAAG	1 cut(s)	430
BisI	GCNGC	7 cut(s)	159, 225, 450, 510, 1065, 1129, 1146
BlsI	GCNGC	7 cut(s)	160, 226, 451, 511, 1066, 1130, 1147
Bme1390I	CCNGG	4 cut(s)	869, 899, 900, 986
BmeT110I	CYCGRG	2 cut(s)	898, 939
BmgT120I	GGNCC	1 cut(s)	901
BmiI	GGNNCC	2 cut(s)	83, 799
BmrFI	CCNGG	4 cut(s)	869, 899, 900, 986
BmsI	GCATC	3 cut(s)	292, 553, 613
BpiI	GAAGAC	1 cut(s)	183
BplI	GAGNNNNNCTC	2 cut(s)	819, 851
BpmI	CTGGAG	3 cut(s)	402, 525, 1034
Bpu10I	CCTNAGC	1 cut(s)	533
BpuEI	CTTGAG	2 cut(s)	161, 395
BpuMI	CCSGG	3 cut(s)	869, 899, 900
BsaHI	GRCGYC	1 cut(s)	1001
BsaI	GGTCTC	1 cut(s)	292
BsaJI	CCNNGG	2 cut(s)	898, 984
BsaWI	WCCGGW	1 cut(s)	539
Bsc4I	CCNNNNNNNGG	1 cut(s)	1080
Bse1I	ACTGG	1 cut(s)	1092
Bse3DI	GCAATG	2 cut(s)	355, 1032
BseAI	TCCGGA	1 cut(s)	539
BseBI	CCWGG	1 cut(s)	986
BseDI	CCNNGG	2 cut(s)	898, 984
BseLI	CCNNNNNNNGG	1 cut(s)	1080
BseMI	GCAATG	2 cut(s)	355, 1032
BseMII	CTCAG	2 cut(s)	547, 738
BseNI	ACTGG	1 cut(s)	1092
BseRI	GAGGAG	8 cut(s)	26, 193, 196, 199, 384, 398, 630, 644
BseXI	GCAGC	4 cut(s)	461, 496, 1051, 1132
BsgI	GTGCAG	2 cut(s)	495, 912
Bsh1236I	CGCG	1 cut(s)	738
BshFI	GGCC	3 cut(s)	146, 227, 903
BsiHKAI	GWGCWC	3 cut(s)	23, 408, 1119
BsiHKCI	CYCGRG	2 cut(s)	898, 939
BsiSI	CCGG	3 cut(s)	540, 868, 899
BslFI	GGGAC	1 cut(s)	881
BslI	CCNNNNNNNGG	1 cut(s)	1080
BsmAI	GTCTC	3 cut(s)	159, 292, 776
BsmFI	GGGAC	1 cut(s)	881
BsmI	GAATGC	2 cut(s)	668, 1131
BsnI	GGCC	3 cut(s)	146, 227, 903
Bso31I	GGTCTC	1 cut(s)	292
BsoBI	CYCGRG	2 cut(s)	898, 939
Bsp1286I	GDGCHC	3 cut(s)	23, 408, 1119
Bsp13I	TCCGGA	1 cut(s)	539
Bsp1407I	TGTACA	1 cut(s)	1154
Bsp143I	GATC	4 cut(s)	136, 528, 765, 797
BspACI	CCGC	6 cut(s)	159, 224, 515, 910, 1074, 1129
BspANI	GGCC	3 cut(s)	146, 227, 903
BspCNI	CTCAG	2 cut(s)	546, 737
BspEI	TCCGGA	1 cut(s)	539
BspFNI	CGCG	1 cut(s)	738
BspLI	GGNNCC	2 cut(s)	83, 799
BspMAI	CTGCAG	1 cut(s)	451
BspPI	GGATC	4 cut(s)	523, 773, 792, 805
BspQI	GCTCTTC	1 cut(s)	333
BspTI	CTTAAG	1 cut(s)	430
BspTNI	GGTCTC	1 cut(s)	292
BsrBI	CCGCTC	1 cut(s)	517
BsrDI	GCAATG	2 cut(s)	355, 1032
BsrGI	TGTACA	1 cut(s)	1154
BsrI	ACTGG	1 cut(s)	1092
BssECI	CCNNGG	2 cut(s)	898, 984
BssMI	GATC	4 cut(s)	136, 528, 765, 797
BssNAI	GTATAC	2 cut(s)	956, 1027
BssNI	GRCGYC	1 cut(s)	1001
BssSI	CACGAG	1 cut(s)	1039
Bst1107I	GTATAC	2 cut(s)	956, 1027
Bst2BI	CACGAG	1 cut(s)	1039
Bst2UI	CCWGG	1 cut(s)	986
Bst4CI	ACNGT	5 cut(s)	25, 425, 465, 787, 919
Bst6I	CTCTTC	4 cut(s)	217, 324, 333, 595
BstACI	GRCGYC	1 cut(s)	1001
BstAFI	CTTAAG	1 cut(s)	430
BstAUI	TGTACA	1 cut(s)	1154
BstC8I	GCNNGC	1 cut(s)	307
BstDEI	CTNAG	6 cut(s)	120, 533, 724, 754, 775, 971
BstFNI	CGCG	1 cut(s)	738
BstHHI	GCGC	1 cut(s)	738
BstKTI	GATC	4 cut(s)	139, 531, 768, 800
BstMAI	GTCTC	3 cut(s)	159, 292, 776
BstMBI	GATC	4 cut(s)	136, 528, 765, 797
BstMWI	GCNNNNNNNGC	9 cut(s)	13, 311, 449, 506, 572, 827, 1061, 1073, 1128
BstNI	CCWGG	1 cut(s)	986
BstNSI	RCATGY	1 cut(s)	821
BstSCI	CCNGG	4 cut(s)	867, 897, 898, 984
BstSFI	CTRYAG	4 cut(s)	24, 447, 627, 918
BstUI	CGCG	1 cut(s)	738
BstV1I	GCAGC	4 cut(s)	461, 496, 1051, 1132
BstV2I	GAAGAC	1 cut(s)	183
BstX2I	RGATCY	3 cut(s)	528, 765, 797
BstYI	RGATCY	3 cut(s)	528, 765, 797
BstZ17I	GTATAC	2 cut(s)	956, 1027
BsuRI	GGCC	3 cut(s)	146, 227, 903
BtsI	GCAGTG	1 cut(s)	444
BtsIMutI	CAGTG	3 cut(s)	21, 444, 461
Cac8I	GCNNGC	1 cut(s)	307
CfoI	GCGC	1 cut(s)	738
Cfr13I	GGNCC	1 cut(s)	901
Cfr9I	CCCGGG	1 cut(s)	898
CseI	GACGC	2 cut(s)	990, 1137
Csp6I	GTAC	1 cut(s)	1155
CspCI	CAANNNNNGTGG	2 cut(s)	477, 512
CviAII	CATG	5 cut(s)	62, 78, 818, 1111, 1123
CviQI	GTAC	1 cut(s)	1155
DdeI	CTNAG	6 cut(s)	120, 533, 724, 754, 775, 971
DpnI	GATC	4 cut(s)	138, 530, 767, 799
DpnII	GATC	4 cut(s)	136, 528, 765, 797
EaeI	YGGCCR	1 cut(s)	225
Eam1104I	CTCTTC	4 cut(s)	217, 324, 333, 595
EarI	CTCTTC	4 cut(s)	217, 324, 333, 595
Ecl136II	GAGCTC	1 cut(s)	406
Eco24I	GRGCYC	1 cut(s)	408
Eco31I	GGTCTC	1 cut(s)	292
Eco53kI	GAGCTC	1 cut(s)	406
Eco57I	CTGAAG	2 cut(s)	237, 954
Eco88I	CYCGRG	2 cut(s)	898, 939
EcoICRI	GAGCTC	1 cut(s)	406
EcoRII	CCWGG	1 cut(s)	984
EcoT38I	GRGCYC	1 cut(s)	408
FaeI	CATG	5 cut(s)	65, 81, 821, 1114, 1126
FalI	AAGNNNNNCTT	2 cut(s)	303, 335
FaqI	GGGAC	1 cut(s)	881
FatI	CATG	5 cut(s)	61, 77, 817, 1110, 1122
FblI	GTMKAC	2 cut(s)	955, 1026
Fnu4HI	GCNGC	7 cut(s)	159, 225, 450, 510, 1065, 1129, 1146
FriOI	GRGCYC	1 cut(s)	408
Fsp4HI	GCNGC	7 cut(s)	159, 225, 450, 510, 1065, 1129, 1146
FspBI	CTAG	1 cut(s)	323
GlaI	GCGC	1 cut(s)	737
GluI	GCNGC	7 cut(s)	159, 225, 450, 510, 1065, 1129, 1146
GsuI	CTGGAG	3 cut(s)	402, 525, 1034
HaeIII	GGCC	3 cut(s)	146, 227, 903
HapII	CCGG	3 cut(s)	540, 868, 899
HgaI	GACGC	2 cut(s)	990, 1137
HhaI	GCGC	1 cut(s)	738
Hin1I	GRCGYC	1 cut(s)	1001
Hin1II	CATG	5 cut(s)	65, 81, 821, 1114, 1126
Hin6I	GCGC	1 cut(s)	736
HinP1I	GCGC	1 cut(s)	736
HincII	GTYRAC	1 cut(s)	915
HindII	GTYRAC	1 cut(s)	915
HindIII	AAGCTT	1 cut(s)	312
HinfI	GANTC	5 cut(s)	74, 232, 262, 610, 977
HpaII	CCGG	3 cut(s)	540, 868, 899
HphI	GGTGA	2 cut(s)	146, 286
Hpy166II	GTNNAC	4 cut(s)	915, 956, 1027, 1157
Hpy188I	TCNGA	5 cut(s)	73, 173, 185, 528, 727
Hpy8I	GTNNAC	4 cut(s)	915, 956, 1027, 1157
Hpy99I	CGWCG	1 cut(s)	1006
HpyAV	CCTTC	5 cut(s)	713, 725, 881, 914, 1170
HpyCH4III	ACNGT	5 cut(s)	25, 425, 465, 787, 919
HpyCH4V	TGCA	7 cut(s)	449, 476, 512, 597, 666, 743, 893
HpyF10VI	GCNNNNNNNGC	9 cut(s)	13, 311, 449, 506, 572, 827, 1061, 1073, 1128
HpyF3I	CTNAG	6 cut(s)	120, 533, 724, 754, 775, 971
Hsp92I	GRCGYC	1 cut(s)	1001
Hsp92II	CATG	5 cut(s)	65, 81, 821, 1114, 1126
HspAI	GCGC	1 cut(s)	736
Kpn2I	TCCGGA	1 cut(s)	539
Kzo9I	GATC	4 cut(s)	136, 528, 765, 797
LguI	GCTCTTC	1 cut(s)	333
Lsp1109I	GCAGC	4 cut(s)	461, 496, 1051, 1132
LweI	GCATC	3 cut(s)	292, 553, 613
MaeI	CTAG	1 cut(s)	323
MaeIII	GTNAC	4 cut(s)	274, 373, 568, 1083
MalI	GATC	4 cut(s)	138, 530, 767, 799
MbiI	CCGCTC	1 cut(s)	517
MboI	GATC	4 cut(s)	136, 528, 765, 797
MflI	RGATCY	3 cut(s)	528, 765, 797
MhlI	GDGCHC	3 cut(s)	23, 408, 1119
MluCI	AATT	5 cut(s)	66, 150, 489, 615, 1020
MlyI	GAGTC	3 cut(s)	83, 226, 604
MmeI	TCCRAC	2 cut(s)	744, 805
MroI	TCCGGA	1 cut(s)	539
MroXI	GAANNNNTTC	2 cut(s)	190, 876
MseI	TTAA	5 cut(s)	431, 458, 770, 882, 1101
MspA1I	CMGCKG	4 cut(s)	380, 470, 632, 932
MspCI	CTTAAG	1 cut(s)	430
MspI	CCGG	3 cut(s)	540, 868, 899
MspR9I	CCNGG	4 cut(s)	869, 899, 900, 986
Mva1269I	GAATGC	2 cut(s)	668, 1131
MvaI	CCWGG	1 cut(s)	986
MvnI	CGCG	1 cut(s)	738
MwoI	GCNNNNNNNGC	9 cut(s)	13, 311, 449, 506, 572, 827, 1061, 1073, 1128
NciI	CCSGG	3 cut(s)	869, 899, 900
NdeII	GATC	4 cut(s)	136, 528, 765, 797
NlaIII	CATG	5 cut(s)	65, 81, 821, 1114, 1126
NlaIV	GGNNCC	2 cut(s)	83, 799
NmuCI	GTSAC	3 cut(s)	274, 373, 568
NspI	RCATGY	1 cut(s)	821
PciSI	GCTCTTC	1 cut(s)	333
PcsI	WCGNNNNNNNCGW	1 cut(s)	352
PctI	GAATGC	2 cut(s)	668, 1131
PdmI	GAANNNNTTC	2 cut(s)	190, 876
PfeI	GAWTC	2 cut(s)	262, 977
PkrI	GCNGC	7 cut(s)	160, 226, 451, 511, 1066, 1130, 1147
PleI	GAGTC	3 cut(s)	82, 226, 604
PpsI	GAGTC	3 cut(s)	82, 226, 604
PsiI	TTATAA	1 cut(s)	647
Psp124BI	GAGCTC	1 cut(s)	408
Psp6I	CCWGG	1 cut(s)	984
PspGI	CCWGG	1 cut(s)	984
PspN4I	GGNNCC	2 cut(s)	83, 799
PspPI	GGNCC	1 cut(s)	901
PstI	CTGCAG	1 cut(s)	451
PsuI	RGATCY	3 cut(s)	528, 765, 797
PvuII	CAGCTG	4 cut(s)	380, 470, 632, 932
RsaI	GTAC	1 cut(s)	1156
RsaNI	GTAC	1 cut(s)	1155
SacI	GAGCTC	1 cut(s)	408
SapI	GCTCTTC	1 cut(s)	333
SaqAI	TTAA	5 cut(s)	431, 458, 770, 882, 1101
SatI	GCNGC	7 cut(s)	159, 225, 450, 510, 1065, 1129, 1146
Sau3AI	GATC	4 cut(s)	136, 528, 765, 797
Sau96I	GGNCC	1 cut(s)	901
SchI	GAGTC	3 cut(s)	83, 226, 604
ScrFI	CCNGG	4 cut(s)	869, 899, 900, 986
SduI	GDGCHC	3 cut(s)	23, 408, 1119
SfaNI	GCATC	3 cut(s)	292, 553, 613
SfcI	CTRYAG	4 cut(s)	24, 447, 627, 918
SmaI	CCCGGG	1 cut(s)	900
SmlI	CTYRAG	3 cut(s)	140, 410, 430
SmoI	CTYRAG	3 cut(s)	140, 410, 430
Sse9I	AATT	5 cut(s)	66, 150, 489, 615, 1020
SsiI	CCGC	6 cut(s)	159, 224, 515, 910, 1074, 1129
SspI	AATATT	1 cut(s)	1168
SspMI	CTAG	1 cut(s)	323
SstI	GAGCTC	1 cut(s)	408
StyD4I	CCNGG	4 cut(s)	867, 897, 898, 984
TaaI	ACNGT	5 cut(s)	25, 425, 465, 787, 919
TaqI	TCGA	5 cut(s)	108, 235, 708, 856, 1047
TaqII	GACCGA	1 cut(s)	369
TasI	AATT	5 cut(s)	66, 150, 489, 615, 1020
TatI	WGTACW	1 cut(s)	1154
TauI	GCSGC	3 cut(s)	161, 227, 1131
TfiI	GAWTC	2 cut(s)	262, 977
Tru1I	TTAA	5 cut(s)	431, 458, 770, 882, 1101
Tru9I	TTAA	5 cut(s)	431, 458, 770, 882, 1101
TscAI	CASTG	3 cut(s)	28, 451, 468
TseFI	GTSAC	3 cut(s)	274, 373, 568
TseI	GCWGC	4 cut(s)	449, 509, 1064, 1145
Tsp45I	GTSAC	3 cut(s)	274, 373, 568
TspDTI	ATGAA	1 cut(s)	78
TspMI	CCCGGG	1 cut(s)	898
TspRI	CASTG	3 cut(s)	28, 451, 468
Vha464I	CTTAAG	1 cut(s)	430
XapI	RAATTY	1 cut(s)	66
XceI	RCATGY	1 cut(s)	821
XmaI	CCCGGG	1 cut(s)	898
XmiI	GTMKAC	2 cut(s)	955, 1026
XmnI	GAANNNNTTC	2 cut(s)	190, 876
XspI	CTAG	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.