Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0005284

Physical Location & Seq

Genomic Coordinates Reverse (-)

5866332 .. 5867581

Gene Structure 1250 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1083500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGAAGAAAGACCGGCACAGCAAGATCTTCACCGCTCAGGGTTTGAGGGACCGTAGGGTGAGGCTCTCCCTCAACGTTGCCCGTCAGTTCTTTGACCTCCAAGACCTGCTAGGGCTTGACAGGGCAAGTAAAACCATCGAGTGGCTACTAAAAAAGTCCAGAAAGGCCATCAGGGATCTCGAAACACAGAAGAAGAACTTGAGCTGCAGTTCTGAGCAGTCCAAGAGTTTGTCTTCCACTTCCGAGTGCGACGAGGTTGTTTCGGACATAAACGAGGTGGAAAACCATGTAATGAGCAAAGAAAAAGAGATGGTGATGATGAAGAAGTTGAGAGAATCTAAATCTACTGGAGCTTATGTTGCGAAGGAGTCGAGGGCAAAGGCAAGAGCAAAGGCAAGGGAAAGGACAAGAGAGAAAAAGATGTGCACTACTAGTAGGAGGCCTTATCAGATGTTGAACCAATTGAACTTATTGATTGAGCAGCTTGATGATCACGAAACAAACATCTCATCCTCGTCGAAGGTTAATTTTGGAGATCACCGTGTGAATCAAGAACTGGGATCCCTCTTGGCTAATCAAGCTCATCACCATCATCGTCACGAGGAGGATCAATCTGCTTTGATCAAGAGAAACAAAATGAAGTCATTTTCATCAGTAGTTTCCGATTATAATACTACTGATCAGAGTTCCAGCAATAGCCACCTCCAATTTCCCAATGCTTCTCAAAATTGGGACATCAATGGCGCTTTCCCCATGCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0009908 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

254

Amino Acids

29.12

Weight (kDa)

9.59

Isoelectric Point (pI)

56.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TCP	PF03634	2 - 141	5.2e-42	TCP family transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005284)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67260 AT1G67260 AT1G67260
fragaria_vesca	FvH4_6g45410 FvH4_6g45410
malus_domestica	MD09G1083300.v1.1 MD09G1083500.v1.1 MD17G1073600.v1.1
prunus_persica	Prupe.3G240200_v2.0.a1
pyrus_communis	pycom09g00970 pycom17g07450
rosa_chinensis	RchiOBHm_Chr1g0342441 RchiOBHm_Chr2g0163221
rosa_laevigata	RLG00000021385
rosa_multiflora	Rmu_sc0000979.1_g000009 Rmu_sc0002045.1_g000011 Rmu_sc0021084.1_g000007
rosa_roxburghii	Rroxscaffold_2G00087450
rosa_rugosa	Rorug02G0501300 Rorug02G0501400 Rorug02G0501500 Rorug02G0501600 Rorug02G0501600
rosa_samantha	Rh2AG568500 Rh2BG580400 Rh2CG550200 Rh2DG590300
rosa_wichuraiana	Rw1G013840 Rw2G047010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	669
Acc36I	ACCTGC	1 cut(s)	114
AccB7I	CCANNNNNTGG	1 cut(s)	141
AccBSI	CCGCTC	1 cut(s)	35
AciI	CCGC	1 cut(s)	33
AclI	AACGTT	1 cut(s)	75
AclWI	GGATC	4 cut(s)	183, 555, 568, 615
AdeI	CACNNNGTG	1 cut(s)	544
AfiI	CCNNNNNNNGG	1 cut(s)	141
AgsI	TTSAA	2 cut(s)	457, 466
AhlI	ACTAGT	1 cut(s)	431
AluBI	AGCT	4 cut(s)	204, 353, 484, 581
AluI	AGCT	4 cut(s)	204, 353, 484, 581
Alw21I	GWGCWC	1 cut(s)	428
Alw44I	GTGCAC	1 cut(s)	424
AlwI	GGATC	4 cut(s)	183, 555, 568, 615
AoxI	GGCC	2 cut(s)	165, 440
ApaLI	GTGCAC	1 cut(s)	424
ApeKI	GCWGC	2 cut(s)	204, 481
AspLEI	GCGC	1 cut(s)	746
AspS9I	GGNCC	1 cut(s)	49
AsuHPI	GGTGA	5 cut(s)	22, 70, 325, 530, 578
AvaII	GGWCC	1 cut(s)	49
BaeGI	GKGCMC	1 cut(s)	428
BamHI	GGATCC	1 cut(s)	560
BauI	CACGAG	1 cut(s)	599
BbsI	GAAGAC	1 cut(s)	225
Bbv12I	GWGCWC	1 cut(s)	428
BbvI	GCAGC	2 cut(s)	191, 493
BccI	CCATC	4 cut(s)	143, 176, 304, 597
BclI	TGATCA	3 cut(s)	490, 621, 679
BcuI	ACTAGT	1 cut(s)	431
BfaI	CTAG	3 cut(s)	110, 432, 760
BfmI	CTRYAG	1 cut(s)	205
BfoI	RGCGCY	1 cut(s)	747
BfuAI	ACCTGC	1 cut(s)	114
BglII	AGATCT	1 cut(s)	24
BisI	GCNGC	2 cut(s)	205, 482
BlsI	GCNGC	2 cut(s)	206, 483
Bme18I	GGWCC	1 cut(s)	49
BmgT120I	GGNCC	1 cut(s)	49
BmiI	GGNNCC	2 cut(s)	50, 562
BmrI	ACTGGG	1 cut(s)	566
BmuI	ACTGGG	1 cut(s)	566
BpiI	GAAGAC	1 cut(s)	225
BpmI	CTGGAG	1 cut(s)	369
Bpu10I	CCTNAGC	1 cut(s)	36
BpuEI	CTTGAG	1 cut(s)	220
BsaXI	ACNNNNNCTCC	2 cut(s)	342, 372
Bsc4I	CCNNNNNNNGG	1 cut(s)	141
Bse118I	RCCGGY	1 cut(s)	12
Bse1I	ACTGG	2 cut(s)	352, 561
BseGI	GGATG	1 cut(s)	509
BseLI	CCNNNNNNNGG	1 cut(s)	141
BseMII	CTCAG	2 cut(s)	50, 204
BseNI	ACTGG	2 cut(s)	352, 561
BseRI	GAGGAG	1 cut(s)	617
BseSI	GKGCMC	1 cut(s)	428
BseXI	GCAGC	2 cut(s)	191, 493
BshFI	GGCC	2 cut(s)	167, 442
BsiHKAI	GWGCWC	1 cut(s)	428
BsiSI	CCGG	1 cut(s)	13
BslFI	GGGAC	2 cut(s)	62, 746
BslI	CCNNNNNNNGG	1 cut(s)	141
BsmFI	GGGAC	2 cut(s)	62, 746
BsnI	GGCC	2 cut(s)	167, 442
Bsp1286I	GDGCHC	1 cut(s)	428
Bsp143I	GATC	8 cut(s)	24, 175, 490, 535, 560, 607, 621, 679
BspACI	CCGC	1 cut(s)	33
BspANI	GGCC	2 cut(s)	167, 442
BspCNI	CTCAG	2 cut(s)	49, 205
BspLI	GGNNCC	2 cut(s)	50, 562
BspMAI	CTGCAG	1 cut(s)	209
BspMI	ACCTGC	1 cut(s)	114
BspPI	GGATC	4 cut(s)	183, 555, 568, 615
BsrBI	CCGCTC	1 cut(s)	35
BsrFI	RCCGGY	1 cut(s)	12
BsrI	ACTGG	2 cut(s)	352, 561
BssAI	RCCGGY	1 cut(s)	12
BssMI	GATC	8 cut(s)	24, 175, 490, 535, 560, 607, 621, 679
BssSI	CACGAG	1 cut(s)	599
Bst2BI	CACGAG	1 cut(s)	599
Bst4CI	ACNGT	2 cut(s)	53, 542
BstDEI	CTNAG	2 cut(s)	36, 213
BstF5I	GGATG	1 cut(s)	509
BstH2I	RGCGCY	1 cut(s)	747
BstHHI	GCGC	1 cut(s)	746
BstKTI	GATC	8 cut(s)	27, 178, 493, 538, 563, 610, 624, 682
BstMBI	GATC	8 cut(s)	24, 175, 490, 535, 560, 607, 621, 679
BstMWI	GCNNNNNNNGC	2 cut(s)	359, 578
BstSFI	CTRYAG	1 cut(s)	205
BstSLI	GKGCMC	1 cut(s)	428
BstV1I	GCAGC	2 cut(s)	191, 493
BstV2I	GAAGAC	1 cut(s)	225
BstX2I	RGATCY	3 cut(s)	24, 175, 560
BstYI	RGATCY	3 cut(s)	24, 175, 560
BsuRI	GGCC	2 cut(s)	167, 442
BtsCI	GGATG	1 cut(s)	509
BveI	ACCTGC	1 cut(s)	114
CfoI	GCGC	1 cut(s)	746
Cfr10I	RCCGGY	1 cut(s)	12
Cfr13I	GGNCC	1 cut(s)	49
CviAII	CATG	2 cut(s)	287, 754
DdeI	CTNAG	2 cut(s)	36, 213
DpnI	GATC	8 cut(s)	26, 177, 492, 537, 562, 609, 623, 681
DpnII	GATC	8 cut(s)	24, 175, 490, 535, 560, 607, 621, 679
DraIII	CACNNNGTG	1 cut(s)	544
Eco147I	AGGCCT	1 cut(s)	442
Eco47I	GGWCC	1 cut(s)	49
FaeI	CATG	2 cut(s)	290, 757
FaiI	YATR	5 cut(s)	269, 288, 357, 669, 755
FalI	AAGNNNNNCTT	2 cut(s)	182, 214
FaqI	GGGAC	2 cut(s)	62, 746
FatI	CATG	2 cut(s)	286, 753
FbaI	TGATCA	3 cut(s)	490, 621, 679
Fnu4HI	GCNGC	2 cut(s)	205, 482
FokI	GGATG	1 cut(s)	496
Fsp4HI	GCNGC	2 cut(s)	205, 482
FspBI	CTAG	3 cut(s)	110, 432, 760
GlaI	GCGC	1 cut(s)	745
GluI	GCNGC	2 cut(s)	205, 482
GsuI	CTGGAG	1 cut(s)	369
HaeII	RGCGCY	1 cut(s)	747
HaeIII	GGCC	2 cut(s)	167, 442
HapII	CCGG	1 cut(s)	13
HhaI	GCGC	1 cut(s)	746
Hin1II	CATG	2 cut(s)	290, 757
Hin6I	GCGC	1 cut(s)	744
HinP1I	GCGC	1 cut(s)	744
HinfI	GANTC	3 cut(s)	335, 368, 547
HpaII	CCGG	1 cut(s)	13
HphI	GGTGA	5 cut(s)	22, 70, 325, 530, 578
Hpy166II	GTNNAC	1 cut(s)	426
Hpy188I	TCNGA	6 cut(s)	214, 244, 265, 450, 664, 684
Hpy188III	TCNNGA	6 cut(s)	159, 179, 494, 551, 599, 625
Hpy8I	GTNNAC	1 cut(s)	426
Hpy99I	CGWCG	2 cut(s)	254, 520
HpyAV	CCTTC	2 cut(s)	358, 514
HpyCH4III	ACNGT	2 cut(s)	53, 542
HpyCH4IV	ACGT	1 cut(s)	75
HpyCH4V	TGCA	2 cut(s)	207, 426
HpyF10VI	GCNNNNNNNGC	2 cut(s)	359, 578
HpyF3I	CTNAG	2 cut(s)	36, 213
HpySE526I	ACGT	1 cut(s)	75
Hsp92II	CATG	2 cut(s)	290, 757
HspAI	GCGC	1 cut(s)	744
Ksp22I	TGATCA	3 cut(s)	490, 621, 679
Kzo9I	GATC	8 cut(s)	24, 175, 490, 535, 560, 607, 621, 679
LmnI	GCTCC	1 cut(s)	350
LpnPI	CCDG	9 cut(s)	23, 26, 106, 119, 157, 172, 333, 542, 703
Lsp1109I	GCAGC	2 cut(s)	191, 493
MaeI	CTAG	3 cut(s)	110, 432, 760
MaeII	ACGT	1 cut(s)	75
MaeIII	GTNAC	1 cut(s)	596
MalI	GATC	8 cut(s)	26, 177, 492, 537, 562, 609, 623, 681
MbiI	CCGCTC	1 cut(s)	35
MboI	GATC	8 cut(s)	24, 175, 490, 535, 560, 607, 621, 679
MboII	GAAGA	6 cut(s)	16, 19, 202, 205, 225, 334
MfeI	CAATTG	1 cut(s)	461
MflI	RGATCY	3 cut(s)	24, 175, 560
MhlI	GDGCHC	1 cut(s)	428
MluCI	AATT	4 cut(s)	461, 526, 707, 727
MlyI	GAGTC	1 cut(s)	377
MseI	TTAA	1 cut(s)	525
MspI	CCGG	1 cut(s)	13
MunI	CAATTG	1 cut(s)	461
MwoI	GCNNNNNNNGC	2 cut(s)	359, 578
NdeII	GATC	8 cut(s)	24, 175, 490, 535, 560, 607, 621, 679
NlaIII	CATG	2 cut(s)	290, 757
NlaIV	GGNNCC	2 cut(s)	50, 562
NmuCI	GTSAC	1 cut(s)	596
PceI	AGGCCT	1 cut(s)	442
PfeI	GAWTC	2 cut(s)	335, 547
PflMI	CCANNNNNTGG	1 cut(s)	141
PkrI	GCNGC	2 cut(s)	206, 483
PleI	GAGTC	1 cut(s)	376
PpsI	GAGTC	1 cut(s)	376
PsiI	TTATAA	1 cut(s)	669
Psp1406I	AACGTT	1 cut(s)	75
PspN4I	GGNNCC	2 cut(s)	50, 562
PspPI	GGNCC	1 cut(s)	49
PstI	CTGCAG	1 cut(s)	209
PsuI	RGATCY	3 cut(s)	24, 175, 560
SaqAI	TTAA	1 cut(s)	525
SatI	GCNGC	2 cut(s)	205, 482
Sau3AI	GATC	8 cut(s)	24, 175, 490, 535, 560, 607, 621, 679
Sau96I	GGNCC	1 cut(s)	49
SchI	GAGTC	1 cut(s)	377
SduI	GDGCHC	1 cut(s)	428
SfcI	CTRYAG	1 cut(s)	205
SinI	GGWCC	1 cut(s)	49
SmlI	CTYRAG	1 cut(s)	199
SmoI	CTYRAG	1 cut(s)	199
SpeI	ACTAGT	1 cut(s)	431
Sse9I	AATT	4 cut(s)	461, 526, 707, 727
SseBI	AGGCCT	1 cut(s)	442
SsiI	CCGC	1 cut(s)	33
SspMI	CTAG	3 cut(s)	110, 432, 760
StuI	AGGCCT	1 cut(s)	442
TaaI	ACNGT	2 cut(s)	53, 542
TaiI	ACGT	1 cut(s)	78
TaqI	TCGA	4 cut(s)	138, 180, 371, 518
TasI	AATT	4 cut(s)	461, 526, 707, 727
TfiI	GAWTC	2 cut(s)	335, 547
Tru1I	TTAA	1 cut(s)	525
Tru9I	TTAA	1 cut(s)	525
TseFI	GTSAC	1 cut(s)	596
TseI	GCWGC	2 cut(s)	204, 481
Tsp45I	GTSAC	1 cut(s)	596
TspDTI	ATGAA	4 cut(s)	17, 335, 639, 653
Van91I	CCANNNNNTGG	1 cut(s)	141
VneI	GTGCAC	1 cut(s)	424
VpaK11BI	GGWCC	1 cut(s)	49
XspI	CTAG	3 cut(s)	110, 432, 760

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.