Rw2G047010

Protein of unknown function (DUF2854)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0005284
Physical Location & Seq
Forward (+)
74439415 .. 74442047
2633 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G047010.1

Sequence Viewer

Length: 879 bp
ATGGTCAATCTCGGAGGAGCTTCATCAAACGCGATCGTACGATTATCTGGAGACTACCAGCAGCATTATGGTTATGGTAATAATATTACTCATCCCTATTTTGTTTCTAAGGAGGTGAGAGTACCGGTGGTTGCTGTGAAGAAAGACCGGCACAGCAAGATCTTCACTTCTCAGGGCTTGAGGGATCGGAGGGTAAGACTCTCCATCAATGTTGCCCGTGAGTTCTTCGATCTCCAAGACTTGCTAGGGTTTGACAAAGCCAGCAAAACCTTAGAGTGGCTGCTCAGCAATTCCAGAAATGCCATCAAAGACCTAGAAAAGAGCAAGTGCAATAACAGTACTAGTATATCATCTTCTAGTACTTCGGACTGTGATGATGTTTTGGACATAAACAACGAGGCGTCCGATGACAAGAGGAGGAGGAAGATGAAGGAGGCTGCTGCTATAATGGCCAGAGCATCGCGGGCAAAGGCTAGAGCAAGAGCAAGAGAAAGAACAAGAGAGAAGATGTGCGGTACTAGTACGAGGAGCCATCAGATCTGTAGCCAGTTGAGCTTGTTCAATGAGCTTGAACCTGCAGATATGAATAAAGAACCGGGTAGTACCCTCCTATCTAATTGTCAAGCTGAATATCATGAATCTGTTGCGCTCAAAAGAAAGCTGAAGGCGCCGTCAGTTTCCAATTATCACGATCGAAGCCTTGAATTGAACCCCAAAAGCACGGAACCTAGTTCAAATTGCGGCAGCCACATTAATATCCAATTTCCGAATGCAATATCTCAAAATTATTGGGACATCGGCGGCAGTGTCTTCACATGCCCTAGCATTTGTGCCATTACCACCAACATGAATCTTAATTCTACGGCTTACTCTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2854 UMP1

Protein Analysis

292

Amino Acids

32.6

Weight (kDa)

9.23

Isoelectric Point (pI)

46.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 46 - 171 2.3e-37 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 583
AccB1I GGYRCC 1 cut(s) 667
AccII CGCG 2 cut(s) 32, 463
AciI CCGC 4 cut(s) 463, 513, 741, 801
AclWI GGATC 1 cut(s) 192
AcoI YGGCCR 1 cut(s) 450
AcuI CTGAAG 1 cut(s) 683
AcyI GRCGYC 2 cut(s) 401, 668
AfaI GTAC 7 cut(s) 39, 123, 340, 361, 517, 523, 604
AfiI CCNNNNNNNGG 1 cut(s) 276
AgeI ACCGGT 1 cut(s) 124
AgsI TTSAA 5 cut(s) 562, 572, 704, 709, 735
AhlI ACTAGT 2 cut(s) 341, 518
AluBI AGCT 5 cut(s) 20, 555, 568, 626, 661
AluI AGCT 5 cut(s) 20, 555, 568, 626, 661
Alw26I GTCTC 1 cut(s) 45
AlwI GGATC 1 cut(s) 192
AoxI GGCC 1 cut(s) 450
ApeKI GCWGC 5 cut(s) 61, 280, 437, 440, 744
AseI ATTAAT 1 cut(s) 753
AsiGI ACCGGT 1 cut(s) 124
AspLEI GCGC 2 cut(s) 649, 670
AsuC2I CCSGG 1 cut(s) 597
AsuHPI GGTGA 1 cut(s) 127
BalI TGGCCA 1 cut(s) 452
BanI GGYRCC 1 cut(s) 667
BarI GAAGNNNNNNTAC 2 cut(s) 337, 369
BbsI GAAGAC 1 cut(s) 802
BbvI GCAGC 5 cut(s) 73, 267, 424, 427, 756
BccI CCATC 3 cut(s) 212, 311, 540
BceAI ACGGC 1 cut(s) 655
BcnI CCSGG 1 cut(s) 597
BcoDI GTCTC 1 cut(s) 45
BcuI ACTAGT 2 cut(s) 341, 518
BfaI CTAG 8 cut(s) 245, 314, 342, 357, 474, 519, 729, 822
BfmI CTRYAG 2 cut(s) 541, 576
BfoI RGCGCY 1 cut(s) 671
BfuAI ACCTGC 1 cut(s) 583
BglII AGATCT 2 cut(s) 159, 537
BisI GCNGC 7 cut(s) 62, 281, 438, 441, 742, 745, 802
BlpI GCTNAGC 1 cut(s) 284
BlsI GCNGC 7 cut(s) 63, 282, 439, 442, 743, 746, 803
BmcAI AGTACT 2 cut(s) 340, 361
Bme1390I CCNGG 1 cut(s) 597
BmiI GGNNCC 3 cut(s) 530, 669, 726
BmrFI CCNGG 1 cut(s) 597
BmsI GCATC 1 cut(s) 467
BpiI GAAGAC 1 cut(s) 802
BpmI CTGGAG 1 cut(s) 69
Bpu1102I GCTNAGC 1 cut(s) 284
BpuEI CTTGAG 1 cut(s) 199
BpuMI CCSGG 1 cut(s) 597
BsaHI GRCGYC 2 cut(s) 401, 668
BsaWI WCCGGW 1 cut(s) 124
Bsc4I CCNNNNNNNGG 1 cut(s) 276
Bse118I RCCGGY 2 cut(s) 124, 147
Bse1I ACTGG 1 cut(s) 547
BseGI GGATG 1 cut(s) 91
BseLI CCNNNNNNNGG 1 cut(s) 276
BseMII CTCAG 2 cut(s) 185, 298
BseNI ACTGG 1 cut(s) 547
BseRI GAGGAG 4 cut(s) 30, 430, 433, 541
BseXI GCAGC 5 cut(s) 73, 267, 424, 427, 756
Bsh1236I CGCG 2 cut(s) 32, 463
Bsh1285I CGRYCG 2 cut(s) 36, 694
BshFI GGCC 1 cut(s) 452
BshNI GGYRCC 1 cut(s) 667
BshTI ACCGGT 1 cut(s) 124
BsiEI CGRYCG 2 cut(s) 36, 694
BsiSI CCGG 3 cut(s) 125, 148, 596
BsiWI CGTACG 1 cut(s) 37
BslFI GGGAC 1 cut(s) 806
BslI CCNNNNNNNGG 1 cut(s) 276
BsmAI GTCTC 1 cut(s) 45
BsmFI GGGAC 1 cut(s) 806
BsmI GAATGC 1 cut(s) 775
BsnI GGCC 1 cut(s) 452
Bsp143I GATC 6 cut(s) 33, 159, 184, 229, 537, 691
Bsp1720I GCTNAGC 1 cut(s) 284
BspACI CCGC 4 cut(s) 463, 513, 741, 801
BspANI GGCC 1 cut(s) 452
BspCNI CTCAG 2 cut(s) 184, 297
BspFNI CGCG 2 cut(s) 32, 463
BspHI TCATGA 1 cut(s) 634
BspLI GGNNCC 3 cut(s) 530, 669, 726
BspMAI CTGCAG 1 cut(s) 580
BspMI ACCTGC 1 cut(s) 583
BspPI GGATC 1 cut(s) 192
BspT107I GGYRCC 1 cut(s) 667
BsrFI RCCGGY 2 cut(s) 124, 147
BsrI ACTGG 1 cut(s) 547
BssAI RCCGGY 2 cut(s) 124, 147
BssMI GATC 6 cut(s) 33, 159, 184, 229, 537, 691
BssNI GRCGYC 2 cut(s) 401, 668
Bst4CI ACNGT 2 cut(s) 338, 371
BstACI GRCGYC 2 cut(s) 401, 668
BstC8I GCNNGC 2 cut(s) 262, 465
BstDEI CTNAG 4 cut(s) 108, 171, 271, 284
BstF5I GGATG 1 cut(s) 91
BstFNI CGCG 2 cut(s) 32, 463
BstH2I RGCGCY 1 cut(s) 671
BstHHI GCGC 2 cut(s) 649, 670
BstKTI GATC 6 cut(s) 36, 162, 187, 232, 540, 694
BstMAI GTCTC 1 cut(s) 45
BstMBI GATC 6 cut(s) 33, 159, 184, 229, 537, 691
BstMCI CGRYCG 2 cut(s) 36, 694
BstMWI GCNNNNNNNGC 4 cut(s) 449, 464, 552, 667
BstNSI RCATGY 1 cut(s) 819
BstSCI CCNGG 1 cut(s) 595
BstSFI CTRYAG 2 cut(s) 541, 576
BstUI CGCG 2 cut(s) 32, 463
BstV1I GCAGC 5 cut(s) 73, 267, 424, 427, 756
BstV2I GAAGAC 1 cut(s) 802
BstX2I RGATCY 2 cut(s) 159, 537
BstYI RGATCY 2 cut(s) 159, 537
BsuRI GGCC 1 cut(s) 452
BtgZI GCGATG 1 cut(s) 444
BtsCI GGATG 1 cut(s) 91
BtsI GCAGTG 1 cut(s) 811
BtsIMutI CAGTG 1 cut(s) 811
BveI ACCTGC 1 cut(s) 583
Cac8I GCNNGC 2 cut(s) 262, 465
CciI TCATGA 1 cut(s) 634
CfoI GCGC 2 cut(s) 649, 670
Cfr10I RCCGGY 2 cut(s) 124, 147
CseI GACGC 1 cut(s) 390
Csp6I GTAC 7 cut(s) 38, 122, 339, 360, 516, 522, 603
CspAI ACCGGT 1 cut(s) 124
CviAII CATG 3 cut(s) 635, 816, 847
CviQI GTAC 7 cut(s) 38, 122, 339, 360, 516, 522, 603
DdeI CTNAG 4 cut(s) 108, 171, 271, 284
DinI GGCGCC 1 cut(s) 669
DpnI GATC 6 cut(s) 35, 161, 186, 231, 539, 693
DpnII GATC 6 cut(s) 33, 159, 184, 229, 537, 691
EaeI YGGCCR 1 cut(s) 450
Eco57I CTGAAG 1 cut(s) 683
EgeI GGCGCC 1 cut(s) 669
EheI GGCGCC 1 cut(s) 669
FaeI CATG 3 cut(s) 638, 819, 850
FaiI YATR 9 cut(s) 69, 75, 347, 389, 446, 584, 636, 817, 848
FaqI GGGAC 1 cut(s) 806
FatI CATG 3 cut(s) 634, 815, 846
FauI CCCGC 1 cut(s) 456
Fnu4HI GCNGC 7 cut(s) 62, 281, 438, 441, 742, 745, 802
FokI GGATG 1 cut(s) 78
Fsp4HI GCNGC 7 cut(s) 62, 281, 438, 441, 742, 745, 802
FspBI CTAG 8 cut(s) 245, 314, 342, 357, 474, 519, 729, 822
GlaI GCGC 2 cut(s) 648, 669
GluI GCNGC 7 cut(s) 62, 281, 438, 441, 742, 745, 802
GsuI CTGGAG 1 cut(s) 69
HaeII RGCGCY 1 cut(s) 671
HaeIII GGCC 1 cut(s) 452
HapII CCGG 3 cut(s) 125, 148, 596
HgaI GACGC 1 cut(s) 390
HhaI GCGC 2 cut(s) 649, 670
Hin1I GRCGYC 2 cut(s) 401, 668
Hin1II CATG 3 cut(s) 638, 819, 850
Hin6I GCGC 2 cut(s) 647, 668
HinP1I GCGC 2 cut(s) 647, 668
HinfI GANTC 3 cut(s) 198, 638, 850
HpaII CCGG 3 cut(s) 125, 148, 596
HphI GGTGA 1 cut(s) 127
Hpy188I TCNGA 6 cut(s) 14, 189, 367, 406, 537, 768
Hpy188III TCNNGA 4 cut(s) 48, 294, 635, 689
HpyAV CCTTC 2 cut(s) 424, 658
HpyCH4III ACNGT 2 cut(s) 338, 371
HpyCH4V TGCA 3 cut(s) 330, 578, 773
HpyF10VI GCNNNNNNNGC 4 cut(s) 449, 464, 552, 667
HpyF3I CTNAG 4 cut(s) 108, 171, 271, 284
Hsp92I GRCGYC 2 cut(s) 401, 668
Hsp92II CATG 3 cut(s) 638, 819, 850
HspAI GCGC 2 cut(s) 647, 668
KasI GGCGCC 1 cut(s) 667
Kzo9I GATC 6 cut(s) 33, 159, 184, 229, 537, 691
LmnI GCTCC 2 cut(s) 17, 528
Lsp1109I GCAGC 5 cut(s) 73, 267, 424, 427, 756
LweI GCATC 1 cut(s) 467
MaeI CTAG 8 cut(s) 245, 314, 342, 357, 474, 519, 729, 822
MalI GATC 6 cut(s) 35, 161, 186, 231, 539, 693
MboI GATC 6 cut(s) 33, 159, 184, 229, 537, 691
MboII GAAGA 7 cut(s) 151, 154, 217, 345, 436, 517, 802
MflI RGATCY 2 cut(s) 159, 537
MlsI TGGCCA 1 cut(s) 452
MluCI AATT 8 cut(s) 289, 616, 682, 704, 736, 761, 784, 856
MluNI TGGCCA 1 cut(s) 452
Mly113I GGCGCC 1 cut(s) 668
MlyI GAGTC 1 cut(s) 192
Mox20I TGGCCA 1 cut(s) 452
MscI TGGCCA 1 cut(s) 452
MseI TTAA 3 cut(s) 753, 855, 877
MslI CAYNNNNRTG 1 cut(s) 845
Msp20I TGGCCA 1 cut(s) 452
MspI CCGG 3 cut(s) 125, 148, 596
MspR9I CCNGG 1 cut(s) 597
Mva1269I GAATGC 1 cut(s) 775
MvnI CGCG 2 cut(s) 32, 463
MwoI GCNNNNNNNGC 4 cut(s) 449, 464, 552, 667
NarI GGCGCC 1 cut(s) 668
NciI CCSGG 1 cut(s) 597
NdeII GATC 6 cut(s) 33, 159, 184, 229, 537, 691
NlaIII CATG 3 cut(s) 638, 819, 850
NlaIV GGNNCC 3 cut(s) 530, 669, 726
NspI RCATGY 1 cut(s) 819
PagI TCATGA 1 cut(s) 634
PcsI WCGNNNNNNNCGW 1 cut(s) 402
PctI GAATGC 1 cut(s) 775
PfeI GAWTC 2 cut(s) 638, 850
Pfl23II CGTACG 1 cut(s) 37
PinAI ACCGGT 1 cut(s) 124
PkrI GCNGC 7 cut(s) 63, 282, 439, 442, 743, 746, 803
Ple19I CGATCG 2 cut(s) 36, 694
PleI GAGTC 1 cut(s) 192
PluTI GGCGCC 1 cut(s) 671
PpsI GAGTC 1 cut(s) 192
PshBI ATTAAT 1 cut(s) 753
PspLI CGTACG 1 cut(s) 37
PspN4I GGNNCC 3 cut(s) 530, 669, 726
PstI CTGCAG 1 cut(s) 580
PsuI RGATCY 2 cut(s) 159, 537
PvuI CGATCG 2 cut(s) 36, 694
RsaI GTAC 7 cut(s) 39, 123, 340, 361, 517, 523, 604
RsaNI GTAC 7 cut(s) 38, 122, 339, 360, 516, 522, 603
RseI CAYNNNNRTG 1 cut(s) 845
SaqAI TTAA 3 cut(s) 753, 855, 877
SatI GCNGC 7 cut(s) 62, 281, 438, 441, 742, 745, 802
Sau3AI GATC 6 cut(s) 33, 159, 184, 229, 537, 691
ScaI AGTACT 2 cut(s) 340, 361
SchI GAGTC 1 cut(s) 192
ScrFI CCNGG 1 cut(s) 597
SfaNI GCATC 1 cut(s) 467
SfcI CTRYAG 2 cut(s) 541, 576
SfoI GGCGCC 1 cut(s) 669
SmiMI CAYNNNNRTG 1 cut(s) 845
SmlI CTYRAG 1 cut(s) 178
SmoI CTYRAG 1 cut(s) 178
SpeI ACTAGT 2 cut(s) 341, 518
Sse9I AATT 8 cut(s) 289, 616, 682, 704, 736, 761, 784, 856
SsiI CCGC 4 cut(s) 463, 513, 741, 801
SspDI GGCGCC 1 cut(s) 667
SspI AATATT 1 cut(s) 85
SspMI CTAG 8 cut(s) 245, 314, 342, 357, 474, 519, 729, 822
StyD4I CCNGG 1 cut(s) 595
TaaI ACNGT 2 cut(s) 338, 371
TaqI TCGA 2 cut(s) 228, 694
TasI AATT 8 cut(s) 289, 616, 682, 704, 736, 761, 784, 856
TatI WGTACW 2 cut(s) 338, 359
TauI GCSGC 2 cut(s) 744, 804
TfiI GAWTC 2 cut(s) 638, 850
Tru1I TTAA 3 cut(s) 753, 855, 877
Tru9I TTAA 3 cut(s) 753, 855, 877
TscAI CASTG 1 cut(s) 811
TseI GCWGC 5 cut(s) 61, 280, 437, 440, 744
TspDTI ATGAA 5 cut(s) 12, 443, 599, 651, 863
TspGWI ACGGA 1 cut(s) 737
TspRI CASTG 1 cut(s) 811
VspI ATTAAT 1 cut(s) 753
XceI RCATGY 1 cut(s) 819
XcmI CCANNNNNNNNNTGG 1 cut(s) 65
XspI CTAG 8 cut(s) 245, 314, 342, 357, 474, 519, 729, 822
ZrmI AGTACT 2 cut(s) 340, 361
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.