Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0005284

Physical Location & Seq

Genomic Coordinates Reverse (-)

5829036 .. 5829824

Gene Structure 789 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1083300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGTTTTCATCCTCCAGTTATAATAGTAATACTGTAATTCCTTTTCAACATAACTTTCCCTTTTCTTCTTCTTCTTCTTCAAATTACCCTCCTCCTCCTCCTCCTCCTCCTTGTGCAAACCTAGAAACCTGCACCGGAGACACTTTCCTTCATCACATTCCTGATCCCCTCTCTGGTCAATTTTCACACCAAAATATTGCTTTAATGGCGCCTCCTTCTCATCAAACCCTAACCCATTTGGGAGGAAGATTTAGTAGTAGCACCGGCCGAGATGAAGAAAGACCGGCACAGCAAGATCTTCACCGCTCAGGGTTTGAGGGACCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0009908 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

109

Amino Acids

11.75

Weight (kDa)

5.89

Isoelectric Point (pI)

75.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005284)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67260 AT1G67260 AT1G67260
fragaria_vesca	FvH4_6g45410 FvH4_6g45410
malus_domestica	MD09G1083300.v1.1 MD09G1083500.v1.1 MD17G1073600.v1.1
prunus_persica	Prupe.3G240200_v2.0.a1
pyrus_communis	pycom09g00970 pycom17g07450
rosa_chinensis	RchiOBHm_Chr1g0342441 RchiOBHm_Chr2g0163221
rosa_laevigata	RLG00000021385
rosa_multiflora	Rmu_sc0000979.1_g000009 Rmu_sc0002045.1_g000011 Rmu_sc0021084.1_g000007
rosa_roxburghii	Rroxscaffold_2G00087450
rosa_rugosa	Rorug02G0501300 Rorug02G0501400 Rorug02G0501500 Rorug02G0501600 Rorug02G0501600
rosa_samantha	Rh2AG568500 Rh2BG580400 Rh2CG550200 Rh2DG590300
rosa_wichuraiana	Rw1G013840 Rw2G047010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	21
Acc36I	ACCTGC	1 cut(s)	137
AccB1I	GGYRCC	1 cut(s)	208
AccBSI	CCGCTC	1 cut(s)	306
AciI	CCGC	1 cut(s)	304
AclWI	GGATC	1 cut(s)	158
AcoI	YGGCCR	1 cut(s)	265
AcyI	GRCGYC	1 cut(s)	209
AfiI	CCNNNNNNNGG	1 cut(s)	173
AgsI	TTSAA	2 cut(s)	47, 81
Alw26I	GTCTC	1 cut(s)	132
AlwI	GGATC	1 cut(s)	158
AoxI	GGCC	1 cut(s)	265
AspLEI	GCGC	1 cut(s)	211
AspS9I	GGNCC	1 cut(s)	320
AsuHPI	GGTGA	1 cut(s)	293
AvaII	GGWCC	1 cut(s)	320
BanI	GGYRCC	1 cut(s)	208
BcoDI	GTCTC	1 cut(s)	132
BfaI	CTAG	1 cut(s)	122
BfoI	RGCGCY	1 cut(s)	212
BfuAI	ACCTGC	1 cut(s)	137
BglII	AGATCT	1 cut(s)	295
Bme18I	GGWCC	1 cut(s)	320
BmgT120I	GGNCC	1 cut(s)	320
BmiI	GGNNCC	2 cut(s)	210, 321
Bpu10I	CCTNAGC	1 cut(s)	307
BsaHI	GRCGYC	1 cut(s)	209
BsaWI	WCCGGW	1 cut(s)	134
Bsc4I	CCNNNNNNNGG	1 cut(s)	173
Bse118I	RCCGGY	2 cut(s)	263, 283
Bse1I	ACTGG	1 cut(s)	15
BseGI	GGATG	1 cut(s)	8
BseLI	CCNNNNNNNGG	1 cut(s)	173
BseMII	CTCAG	1 cut(s)	321
BseNI	ACTGG	1 cut(s)	15
BseRI	GAGGAG	6 cut(s)	81, 84, 87, 90, 93, 96
BseX3I	CGGCCG	1 cut(s)	265
BsgI	GTGCAG	1 cut(s)	115
Bsh1285I	CGRYCG	1 cut(s)	268
BshFI	GGCC	1 cut(s)	267
BshNI	GGYRCC	1 cut(s)	208
BsiEI	CGRYCG	1 cut(s)	268
BsiSI	CCGG	3 cut(s)	135, 264, 284
BslI	CCNNNNNNNGG	1 cut(s)	173
BsmAI	GTCTC	1 cut(s)	132
BsnI	GGCC	1 cut(s)	267
Bsp143I	GATC	2 cut(s)	163, 295
BspACI	CCGC	1 cut(s)	304
BspANI	GGCC	1 cut(s)	267
BspCNI	CTCAG	1 cut(s)	320
BspLI	GGNNCC	2 cut(s)	210, 321
BspMI	ACCTGC	1 cut(s)	137
BspPI	GGATC	1 cut(s)	158
BspT107I	GGYRCC	1 cut(s)	208
BsrBI	CCGCTC	1 cut(s)	306
BsrFI	RCCGGY	2 cut(s)	263, 283
BsrI	ACTGG	1 cut(s)	15
BssAI	RCCGGY	2 cut(s)	263, 283
BssMI	GATC	2 cut(s)	163, 295
BssNI	GRCGYC	1 cut(s)	209
Bst4CI	ACNGT	2 cut(s)	34, 324
BstACI	GRCGYC	1 cut(s)	209
BstDEI	CTNAG	1 cut(s)	307
BstF5I	GGATG	1 cut(s)	8
BstH2I	RGCGCY	1 cut(s)	212
BstHHI	GCGC	1 cut(s)	211
BstKTI	GATC	2 cut(s)	166, 298
BstMAI	GTCTC	1 cut(s)	132
BstMBI	GATC	2 cut(s)	163, 295
BstMCI	CGRYCG	1 cut(s)	268
BstMWI	GCNNNNNNNGC	1 cut(s)	206
BstX2I	RGATCY	1 cut(s)	295
BstYI	RGATCY	1 cut(s)	295
BstZI	CGGCCG	1 cut(s)	265
BsuRI	GGCC	1 cut(s)	267
BtsCI	GGATG	1 cut(s)	8
BveI	ACCTGC	1 cut(s)	137
CfoI	GCGC	1 cut(s)	211
Cfr10I	RCCGGY	2 cut(s)	263, 283
Cfr13I	GGNCC	1 cut(s)	320
CviJI	RGCY	1 cut(s)	267
CviKI_1	RGCY	1 cut(s)	267
DdeI	CTNAG	1 cut(s)	307
DinI	GGCGCC	1 cut(s)	210
DpnI	GATC	2 cut(s)	165, 297
DpnII	GATC	2 cut(s)	163, 295
EaeI	YGGCCR	1 cut(s)	265
EagI	CGGCCG	1 cut(s)	265
EclXI	CGGCCG	1 cut(s)	265
Eco47I	GGWCC	1 cut(s)	320
Eco52I	CGGCCG	1 cut(s)	265
EgeI	GGCGCC	1 cut(s)	210
EheI	GGCGCC	1 cut(s)	210
FaiI	YATR	2 cut(s)	21, 51
FspBI	CTAG	1 cut(s)	122
GlaI	GCGC	1 cut(s)	210
HaeII	RGCGCY	1 cut(s)	212
HaeIII	GGCC	1 cut(s)	267
HapII	CCGG	3 cut(s)	135, 264, 284
HhaI	GCGC	1 cut(s)	211
Hin1I	GRCGYC	1 cut(s)	209
Hin6I	GCGC	1 cut(s)	209
HinP1I	GCGC	1 cut(s)	209
HpaII	CCGG	3 cut(s)	135, 264, 284
HphI	GGTGA	1 cut(s)	293
Hpy188III	TCNNGA	1 cut(s)	161
HpyAV	CCTTC	2 cut(s)	158, 225
HpyCH4III	ACNGT	2 cut(s)	34, 324
HpyCH4V	TGCA	2 cut(s)	116, 132
HpyF10VI	GCNNNNNNNGC	1 cut(s)	206
HpyF3I	CTNAG	1 cut(s)	307
Hsp92I	GRCGYC	1 cut(s)	209
HspAI	GCGC	1 cut(s)	209
KasI	GGCGCC	1 cut(s)	208
Kzo9I	GATC	2 cut(s)	163, 295
LpnPI	CCDG	8 cut(s)	28, 142, 148, 159, 174, 277, 294, 297
MaeI	CTAG	1 cut(s)	122
MalI	GATC	2 cut(s)	165, 297
MbiI	CCGCTC	1 cut(s)	306
MboI	GATC	2 cut(s)	163, 295
MboII	GAAGA	8 cut(s)	57, 60, 63, 66, 69, 258, 287, 290
MflI	RGATCY	1 cut(s)	295
MluCI	AATT	3 cut(s)	36, 82, 179
Mly113I	GGCGCC	1 cut(s)	209
MseI	TTAA	1 cut(s)	203
MspI	CCGG	3 cut(s)	135, 264, 284
MwoI	GCNNNNNNNGC	1 cut(s)	206
NarI	GGCGCC	1 cut(s)	209
NdeII	GATC	2 cut(s)	163, 295
NlaIV	GGNNCC	2 cut(s)	210, 321
NmeAIII	GCCGAG	1 cut(s)	293
PluTI	GGCGCC	1 cut(s)	212
PsiI	TTATAA	1 cut(s)	21
PspN4I	GGNNCC	2 cut(s)	210, 321
PspPI	GGNCC	1 cut(s)	320
PsuI	RGATCY	1 cut(s)	295
SaqAI	TTAA	1 cut(s)	203
Sau3AI	GATC	2 cut(s)	163, 295
Sau96I	GGNCC	1 cut(s)	320
SetI	ASST	2 cut(s)	123, 131
SfoI	GGCGCC	1 cut(s)	210
SinI	GGWCC	1 cut(s)	320
Sse9I	AATT	3 cut(s)	36, 82, 179
SsiI	CCGC	1 cut(s)	304
SspDI	GGCGCC	1 cut(s)	208
SspI	AATATT	1 cut(s)	196
SspMI	CTAG	1 cut(s)	122
TaaI	ACNGT	2 cut(s)	34, 324
TasI	AATT	3 cut(s)	36, 82, 179
Tru1I	TTAA	1 cut(s)	203
Tru9I	TTAA	1 cut(s)	203
TspDTI	ATGAA	2 cut(s)	140, 288
VpaK11BI	GGWCC	1 cut(s)	320
XspI	CTAG	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.