Rroxscaffold_2G00087450

Protein of unknown function (DUF2854)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0005284
Physical Location & Seq
Reverse (-)
9491142 .. 9494710
3569 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00087450.1

Sequence Viewer

Length: 849 bp
ATGGTTATGGTAATAATATTACTCATCCCTATTTTGTTTCTAAGGAGGAGAGTACCGGTGGTTGCTGTGAAGAAAGACCGGCACAGCAAGATCTTCACTTCTCAGGGCTTGAGGGATCGGAGGGTAAGACTCTCCATCAATGTTGCCCGTGAGTTCTTCGATCTCCAAGACTTGCTAGGGTTTGACAAAGCCAGCAAAACCTTAGAGTGGCTGCTCAGCAATTCCAGAAAGGCCATCAAAGACCTAGAAAAGAGCAAGTGCAATAACAGTACTAGTATATCATCTTCTAGTTCTTCGGACTGTGATGATGTTTTGGACATAAACAACGAGGCGTCCGATGACAAGAGGAGGAAGATGAAGGAGGCTGCTGCTATAATGGCCAGAGCATCACGGGCAAAGGCTAGAGCAAGAGCAAGAGAAAGAACAAGAGAGAAGATGTGCAGTACTAGTAAGAGGAGCCCTCAGATCTGTAGCCAGTTGAGCTTGTTCAATGAGCTTGAACCTGCAGATATGAATAAAGAACCGGGTAGTACACTCCTATCTAATTGTCAAGCTGAATATCATGAATCTGTTGCGCTCAAAAGAAAGCTGAAGGCGCCGTCAGTTTCCAATTATCATGATCGAAGCCTTGAATTGAACCCCAAAAGCACGGAACCTAGTTCAAATTGCTGCAGCCACATTAATATCCAATTTCCGAATGCAATATCTCAAAATTATTGGGACATCAGCGGCAGTGTCTTCACATGCCCTAGCATTTGTGCCATTACCACCAACATGAATCTTAATTCTACGGCTGATGATCAAGGTGGTGATATCCATGACAATACATATAAAGCTGTTCCCTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2854 UMP1

Protein Analysis

282

Amino Acids

31.62

Weight (kDa)

9.15

Isoelectric Point (pI)

53.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 23 - 148 3.6e-37 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 511
AccB1I GGYRCC 1 cut(s) 595
AciI CCGC 1 cut(s) 729
AclWI GGATC 1 cut(s) 123
AcoI YGGCCR 1 cut(s) 378
AcuI CTGAAG 1 cut(s) 611
AcyI GRCGYC 2 cut(s) 332, 596
AfaI GTAC 4 cut(s) 54, 271, 445, 532
AfiI CCNNNNNNNGG 1 cut(s) 207
AgeI ACCGGT 1 cut(s) 55
AgsI TTSAA 5 cut(s) 490, 500, 632, 637, 663
AhlI ACTAGT 2 cut(s) 272, 446
AluBI AGCT 5 cut(s) 483, 496, 554, 589, 836
AluI AGCT 5 cut(s) 483, 496, 554, 589, 836
AlwI GGATC 1 cut(s) 123
AoxI GGCC 2 cut(s) 231, 378
ApeKI GCWGC 5 cut(s) 211, 365, 368, 669, 672
AseI ATTAAT 1 cut(s) 681
AsiGI ACCGGT 1 cut(s) 55
AspLEI GCGC 2 cut(s) 577, 598
AsuC2I CCSGG 1 cut(s) 525
AsuHPI GGTGA 1 cut(s) 821
BalI TGGCCA 1 cut(s) 380
BanI GGYRCC 1 cut(s) 595
BanII GRGCYC 1 cut(s) 461
BarI GAAGNNNNNNTAC 2 cut(s) 268, 300
BbsI GAAGAC 1 cut(s) 730
BbvI GCAGC 5 cut(s) 198, 352, 355, 656, 684
BccI CCATC 2 cut(s) 143, 242
BceAI ACGGC 2 cut(s) 583, 807
BclI TGATCA 1 cut(s) 799
BcnI CCSGG 1 cut(s) 525
BcuI ACTAGT 2 cut(s) 272, 446
BfaI CTAG 8 cut(s) 176, 245, 273, 288, 402, 447, 657, 750
BfmI CTRYAG 3 cut(s) 469, 504, 670
BfoI RGCGCY 1 cut(s) 599
BfuAI ACCTGC 1 cut(s) 511
BglII AGATCT 2 cut(s) 90, 465
BisI GCNGC 6 cut(s) 212, 366, 369, 670, 673, 730
BlpI GCTNAGC 1 cut(s) 215
BlsI GCNGC 6 cut(s) 213, 367, 370, 671, 674, 731
BmcAI AGTACT 2 cut(s) 271, 445
Bme1390I CCNGG 1 cut(s) 525
BmiI GGNNCC 3 cut(s) 458, 597, 654
BmrFI CCNGG 1 cut(s) 525
BmsI GCATC 1 cut(s) 395
BpiI GAAGAC 1 cut(s) 730
BplI GAGNNNNNCTC 2 cut(s) 445, 477
Bpu1102I GCTNAGC 1 cut(s) 215
BpuEI CTTGAG 1 cut(s) 130
BpuMI CCSGG 1 cut(s) 525
BsaHI GRCGYC 2 cut(s) 332, 596
BsaWI WCCGGW 1 cut(s) 55
Bsc4I CCNNNNNNNGG 1 cut(s) 207
Bse118I RCCGGY 2 cut(s) 55, 78
Bse1I ACTGG 1 cut(s) 475
BseGI GGATG 1 cut(s) 24
BseLI CCNNNNNNNGG 1 cut(s) 207
BseMII CTCAG 3 cut(s) 116, 229, 476
BseNI ACTGG 1 cut(s) 475
BseRI GAGGAG 3 cut(s) 61, 361, 469
BseXI GCAGC 5 cut(s) 198, 352, 355, 656, 684
BsgI GTGCAG 1 cut(s) 460
BshFI GGCC 2 cut(s) 233, 380
BshNI GGYRCC 1 cut(s) 595
BshTI ACCGGT 1 cut(s) 55
BsiSI CCGG 3 cut(s) 56, 79, 524
BslFI GGGAC 1 cut(s) 734
BslI CCNNNNNNNGG 1 cut(s) 207
BsmFI GGGAC 1 cut(s) 734
BsmI GAATGC 1 cut(s) 703
BsnI GGCC 2 cut(s) 233, 380
Bsp1286I GDGCHC 1 cut(s) 461
Bsp143I GATC 6 cut(s) 90, 115, 160, 465, 619, 799
Bsp1720I GCTNAGC 1 cut(s) 215
BspACI CCGC 1 cut(s) 729
BspANI GGCC 2 cut(s) 233, 380
BspCNI CTCAG 3 cut(s) 115, 228, 475
BspHI TCATGA 2 cut(s) 562, 616
BspLI GGNNCC 3 cut(s) 458, 597, 654
BspMAI CTGCAG 2 cut(s) 508, 674
BspMI ACCTGC 1 cut(s) 511
BspPI GGATC 1 cut(s) 123
BspT107I GGYRCC 1 cut(s) 595
BsrFI RCCGGY 2 cut(s) 55, 78
BsrI ACTGG 1 cut(s) 475
BssAI RCCGGY 2 cut(s) 55, 78
BssMI GATC 6 cut(s) 90, 115, 160, 465, 619, 799
BssNI GRCGYC 2 cut(s) 332, 596
Bst4CI ACNGT 2 cut(s) 269, 302
BstACI GRCGYC 2 cut(s) 332, 596
BstC8I GCNNGC 1 cut(s) 193
BstDEI CTNAG 5 cut(s) 41, 102, 202, 215, 462
BstF5I GGATG 1 cut(s) 24
BstH2I RGCGCY 1 cut(s) 599
BstHHI GCGC 2 cut(s) 577, 598
BstKTI GATC 6 cut(s) 93, 118, 163, 468, 622, 802
BstMBI GATC 6 cut(s) 90, 115, 160, 465, 619, 799
BstMWI GCNNNNNNNGC 4 cut(s) 377, 392, 480, 595
BstNSI RCATGY 1 cut(s) 747
BstSCI CCNGG 1 cut(s) 523
BstSFI CTRYAG 3 cut(s) 469, 504, 670
BstV1I GCAGC 5 cut(s) 198, 352, 355, 656, 684
BstV2I GAAGAC 1 cut(s) 730
BstX2I RGATCY 2 cut(s) 90, 465
BstYI RGATCY 2 cut(s) 90, 465
BsuRI GGCC 2 cut(s) 233, 380
BtsCI GGATG 1 cut(s) 24
BtsI GCAGTG 1 cut(s) 739
BtsIMutI CAGTG 1 cut(s) 739
BveI ACCTGC 1 cut(s) 511
Cac8I GCNNGC 1 cut(s) 193
CciI TCATGA 2 cut(s) 562, 616
CfoI GCGC 2 cut(s) 577, 598
Cfr10I RCCGGY 2 cut(s) 55, 78
CseI GACGC 1 cut(s) 321
Csp6I GTAC 4 cut(s) 53, 270, 444, 531
CspAI ACCGGT 1 cut(s) 55
CviAII CATG 5 cut(s) 563, 617, 744, 775, 818
CviQI GTAC 4 cut(s) 53, 270, 444, 531
DdeI CTNAG 5 cut(s) 41, 102, 202, 215, 462
DinI GGCGCC 1 cut(s) 597
DpnI GATC 6 cut(s) 92, 117, 162, 467, 621, 801
DpnII GATC 6 cut(s) 90, 115, 160, 465, 619, 799
EaeI YGGCCR 1 cut(s) 378
Eco24I GRGCYC 1 cut(s) 461
Eco32I GATATC 1 cut(s) 814
Eco57I CTGAAG 1 cut(s) 611
EcoRV GATATC 1 cut(s) 814
EcoT38I GRGCYC 1 cut(s) 461
EgeI GGCGCC 1 cut(s) 597
EheI GGCGCC 1 cut(s) 597
FaeI CATG 5 cut(s) 566, 620, 747, 778, 821
FaqI GGGAC 1 cut(s) 734
FatI CATG 5 cut(s) 562, 616, 743, 774, 817
FbaI TGATCA 1 cut(s) 799
Fnu4HI GCNGC 6 cut(s) 212, 366, 369, 670, 673, 730
FokI GGATG 1 cut(s) 11
FriOI GRGCYC 1 cut(s) 461
Fsp4HI GCNGC 6 cut(s) 212, 366, 369, 670, 673, 730
FspBI CTAG 8 cut(s) 176, 245, 273, 288, 402, 447, 657, 750
GlaI GCGC 2 cut(s) 576, 597
GluI GCNGC 6 cut(s) 212, 366, 369, 670, 673, 730
HaeII RGCGCY 1 cut(s) 599
HaeIII GGCC 2 cut(s) 233, 380
HapII CCGG 3 cut(s) 56, 79, 524
HgaI GACGC 1 cut(s) 321
HhaI GCGC 2 cut(s) 577, 598
Hin1I GRCGYC 2 cut(s) 332, 596
Hin1II CATG 5 cut(s) 566, 620, 747, 778, 821
Hin6I GCGC 2 cut(s) 575, 596
HinP1I GCGC 2 cut(s) 575, 596
HinfI GANTC 3 cut(s) 129, 566, 778
HpaII CCGG 3 cut(s) 56, 79, 524
HphI GGTGA 1 cut(s) 821
Hpy166II GTNNAC 1 cut(s) 533
Hpy188I TCNGA 5 cut(s) 120, 298, 337, 465, 696
Hpy188III TCNNGA 3 cut(s) 225, 563, 617
Hpy8I GTNNAC 1 cut(s) 533
HpyAV CCTTC 2 cut(s) 352, 586
HpyCH4III ACNGT 2 cut(s) 269, 302
HpyCH4V TGCA 5 cut(s) 261, 441, 506, 672, 701
HpyF10VI GCNNNNNNNGC 4 cut(s) 377, 392, 480, 595
HpyF3I CTNAG 5 cut(s) 41, 102, 202, 215, 462
Hsp92I GRCGYC 2 cut(s) 332, 596
Hsp92II CATG 5 cut(s) 566, 620, 747, 778, 821
HspAI GCGC 2 cut(s) 575, 596
KasI GGCGCC 1 cut(s) 595
Ksp22I TGATCA 1 cut(s) 799
Kzo9I GATC 6 cut(s) 90, 115, 160, 465, 619, 799
LmnI GCTCC 1 cut(s) 456
LpnPI CCDG 9 cut(s) 69, 89, 92, 205, 238, 394, 488, 516, 537
Lsp1109I GCAGC 5 cut(s) 198, 352, 355, 656, 684
LweI GCATC 1 cut(s) 395
MaeI CTAG 8 cut(s) 176, 245, 273, 288, 402, 447, 657, 750
MalI GATC 6 cut(s) 92, 117, 162, 467, 621, 801
MboI GATC 6 cut(s) 90, 115, 160, 465, 619, 799
MboII GAAGA 8 cut(s) 82, 85, 148, 276, 285, 364, 445, 730
MflI RGATCY 2 cut(s) 90, 465
MhlI GDGCHC 1 cut(s) 461
MlsI TGGCCA 1 cut(s) 380
MluCI AATT 8 cut(s) 220, 544, 610, 632, 664, 689, 712, 784
MluNI TGGCCA 1 cut(s) 380
Mly113I GGCGCC 1 cut(s) 596
MlyI GAGTC 1 cut(s) 123
MnlI CCTC 9 cut(s) 39, 105, 114, 322, 339, 342, 355, 447, 471
Mox20I TGGCCA 1 cut(s) 380
MscI TGGCCA 1 cut(s) 380
MseI TTAA 2 cut(s) 681, 783
MslI CAYNNNNRTG 1 cut(s) 773
Msp20I TGGCCA 1 cut(s) 380
MspA1I CMGCKG 1 cut(s) 729
MspI CCGG 3 cut(s) 56, 79, 524
MspR9I CCNGG 1 cut(s) 525
Mva1269I GAATGC 1 cut(s) 703
MwoI GCNNNNNNNGC 4 cut(s) 377, 392, 480, 595
NarI GGCGCC 1 cut(s) 596
NciI CCSGG 1 cut(s) 525
NdeII GATC 6 cut(s) 90, 115, 160, 465, 619, 799
NlaIII CATG 5 cut(s) 566, 620, 747, 778, 821
NlaIV GGNNCC 3 cut(s) 458, 597, 654
NspI RCATGY 1 cut(s) 747
PagI TCATGA 2 cut(s) 562, 616
PcsI WCGNNNNNNNCGW 1 cut(s) 333
PctI GAATGC 1 cut(s) 703
PfeI GAWTC 2 cut(s) 566, 778
PinAI ACCGGT 1 cut(s) 55
PkrI GCNGC 6 cut(s) 213, 367, 370, 671, 674, 731
PleI GAGTC 1 cut(s) 123
PluTI GGCGCC 1 cut(s) 599
PpsI GAGTC 1 cut(s) 123
PshBI ATTAAT 1 cut(s) 681
PspN4I GGNNCC 3 cut(s) 458, 597, 654
PstI CTGCAG 2 cut(s) 508, 674
PsuI RGATCY 2 cut(s) 90, 465
RsaI GTAC 4 cut(s) 54, 271, 445, 532
RsaNI GTAC 4 cut(s) 53, 270, 444, 531
RseI CAYNNNNRTG 1 cut(s) 773
SaqAI TTAA 2 cut(s) 681, 783
SatI GCNGC 6 cut(s) 212, 366, 369, 670, 673, 730
Sau3AI GATC 6 cut(s) 90, 115, 160, 465, 619, 799
ScaI AGTACT 2 cut(s) 271, 445
SchI GAGTC 1 cut(s) 123
ScrFI CCNGG 1 cut(s) 525
SduI GDGCHC 1 cut(s) 461
SfaNI GCATC 1 cut(s) 395
SfcI CTRYAG 3 cut(s) 469, 504, 670
SfoI GGCGCC 1 cut(s) 597
SmiMI CAYNNNNRTG 1 cut(s) 773
SmlI CTYRAG 1 cut(s) 109
SmoI CTYRAG 1 cut(s) 109
SpeI ACTAGT 2 cut(s) 272, 446
Sse9I AATT 8 cut(s) 220, 544, 610, 632, 664, 689, 712, 784
SsiI CCGC 1 cut(s) 729
SspDI GGCGCC 1 cut(s) 595
SspI AATATT 1 cut(s) 18
SspMI CTAG 8 cut(s) 176, 245, 273, 288, 402, 447, 657, 750
StyD4I CCNGG 1 cut(s) 523
TaaI ACNGT 2 cut(s) 269, 302
TaqI TCGA 2 cut(s) 159, 622
TasI AATT 8 cut(s) 220, 544, 610, 632, 664, 689, 712, 784
TatI WGTACW 3 cut(s) 269, 443, 530
TauI GCSGC 1 cut(s) 732
TfiI GAWTC 2 cut(s) 566, 778
Tru1I TTAA 2 cut(s) 681, 783
Tru9I TTAA 2 cut(s) 681, 783
TscAI CASTG 1 cut(s) 739
TseI GCWGC 5 cut(s) 211, 365, 368, 669, 672
TspDTI ATGAA 4 cut(s) 371, 527, 579, 791
TspGWI ACGGA 1 cut(s) 665
TspRI CASTG 1 cut(s) 739
VspI ATTAAT 1 cut(s) 681
XceI RCATGY 1 cut(s) 747
XspI CTAG 8 cut(s) 176, 245, 273, 288, 402, 447, 657, 750
ZrmI AGTACT 2 cut(s) 271, 445
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.