Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004054

Physical Location & Seq

Genomic Coordinates Reverse (-)

29625587 .. 29628024

Gene Structure 2438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G78800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

ATGGCGAAAAAAGAAGGTTCAAAGATGAACATCGCCATTATACATCCAGATCTTGGAATAGGCGGAGCAGAGAGATTGATTGTTGATGCGGCCGTTGAGCTTGCCTCGCACGGTCATAAAGTTCATATCTTCACCTCTCACCACGACAAATCCAGATGCTTCGAGGAAACTCTTTCCGGTATCTTTCAAGTTACGGTGTATGGATCTTTCCTGCCACGGCATATTTTCTACCGACTACACGCAGTGTGTGCATATTTGCGGTGCTTGTTTGTTGCTCTCTGTGTTCTTTTGGGTTGGTCTTCATTCGATGTTGTACTAGCAGACCAAGTTTCAGTCGTAGTCCCATTGCTGAAACTCAAAAGGTCATCTAAGGTTGTTTTCTACTGCCATTTCCCGGATCTCTTGCTAGCTAAGCATACAACAACACTTAGACGGATGTATCGGAAACCCATTGATTTCATTGAAGAACAAACAACAGGGATGGCTGATATGATCCTTGTTAACAGTAACTTCACGGCATCAACATTTGCCAATACATTTAAAAGGCTAAATGCACAAGGGAGTCGCCCAGCTGTACTTTACCCCGCAGTCAATATTGATCAGTTCATTGAACCCCACACTTATAAGTTGAATTTCCTCTCCATAAACCGCTTTGAGAGGAAAAAGAACATCGATCTAGCTGTTTCAGCTTTTGCTATCCTATGCAAACATAAGCAAAATCTGAGTGATGTTACCCTTACCGTTGCAGGTGGATATGACGAGCGATTGAAGGAGAATGTTGAGTACTTGGAGGAGCTCAGAAGTTTAGCCGAGAAAGAAGGAGTTTCTGATCGAGTTAACTTTATCACATCTTGTTCAACCGCTGAAAGAAATGAACTTCTCTCAAGCTGCTTGTGCGTTCTCTACACCCCCACGGATGAACATTTTGGTATTGTTCCATTAGAAGCAATGGCTGCATACAAACCCGTGATAGCCTGCAACAGTGGTGGCCCCGTGGAGACGGTAAAGAATGGAGTAACAGGCTATCTTTGTGAACCAACTCCAGAAGATTTCAGTTCGGCGATGGCTAGATTCATCGAGAATCCTGAGTTGGCGAATAGAATGGGAGCTGAAGCCAGGAACCATGTCGTTGAATCATTCTCTGTGAAGACGTTTGGACAGAAGTTGAATCAGTATCTCGTTGATGTCGTATCAAGTCCTAAAGAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000030 GO:0000033 GO:0003674 GO:0003824 GO:0004376 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006486 GO:0006490 GO:0006629 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0016020 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0031984 GO:0033577 GO:0034645 GO:0036211 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0070085 GO:0071704 GO:0097502 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 map00510 map00513 map01100

Pfam Domains

Protein Families

Glyco_transf_4 Glycos_transf_1

Protein Analysis

403

Amino Acids

45.03

Weight (kDa)

6.71

Isoelectric Point (pI)

42.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_4	PF13439	20 - 200	5.8e-16	Glycosyltransferase Family 4
Glyco_trans_4_4	PF13579	21 - 177	1.1e-06	Glycosyl transferase 4-like domain
GT4-conflict	PF20706	186 - 339	9e-10	Family 4 Glycosyltransferase in conflict systems
Glycos_transf_1	PF00534	210 - 374	9.2e-39	Glycosyl transferases group 1
Glyco_trans_1_4	PF13692	212 - 361	2e-22	Glycosyl transferases group 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004054)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78800
fragaria_vesca	FvH4_3g18220 FvH4_3g18220
malus_domestica	MD00G1077500.v1.1 MD00G1078000.v1.1 MD03G1178900.v1.1 MD11G1264500.v1.1
prunus_persica	Prupe.4G169100_v2.0.a1 Prupe.4G241400_v2.0.a1 Prupe.4G241400_v2.0.a1 Prupe.4G241400_v2.0.a1 Prupe.5G052700_v2.0.a1 Prupe.5G052700_v2.0.a1 Prupe.5G052700_v2.0.a1 Prupe.5G052700_v2.0.a1 Prupe.5G052700_v2.0.a1 Prupe.5G052700_v2.0.a1
pyrus_communis	pycom11g23280
rosa_chinensis	RchiOBHm_Chr5g0030771
rosa_laevigata	RLG00000033250
rosa_multiflora	Rmu_sc0009742.1_g000012 Rmu_sc0021923.1_g000002
rosa_roxburghii	Rroxscaffold_1G00049550
rosa_rugosa	Rorug05G0120600 Rorug05G0120700
rosa_samantha	Rh1AG151000 Rh1CG142200 Rh5AG212700 Rh5BG212000 Rh5CG235200 Rh5DG216800
rosa_wichuraiana	Rw1G012370 Rw5G019480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	624
AarI	CACCTGC	1 cut(s)	737
Acc36I	ACCTGC	1 cut(s)	737
AccB7I	CCANNNNNTGG	1 cut(s)	53
AciI	CCGC	6 cut(s)	63, 89, 259, 585, 649, 861
AclWI	GGATC	3 cut(s)	211, 405, 487
AcoI	YGGCCR	1 cut(s)	90
AcsI	RAATTY	1 cut(s)	631
AcuI	CTGAAG	1 cut(s)	1131
AdeI	CACNNNGTG	1 cut(s)	244
AfaI	GTAC	3 cut(s)	315, 576, 785
AfiI	CCNNNNNNNGG	2 cut(s)	53, 394
AgsI	TTSAA	9 cut(s)	21, 188, 464, 611, 631, 769, 858, 1133, 1168
AjnI	CCWGG	1 cut(s)	1115
AjuI	GAANNNNNNNTTGG	2 cut(s)	1073, 1105
AluBI	AGCT	8 cut(s)	100, 410, 572, 680, 689, 796, 888, 1109
AluI	AGCT	8 cut(s)	100, 410, 572, 680, 689, 796, 888, 1109
Alw21I	GWGCWC	1 cut(s)	798
Alw26I	GTCTC	1 cut(s)	992
AlwI	GGATC	3 cut(s)	211, 405, 487
AoxI	GGCC	2 cut(s)	90, 988
ApeKI	GCWGC	2 cut(s)	888, 953
ApoI	RAATTY	1 cut(s)	631
AspS9I	GGNCC	1 cut(s)	989
AsuC2I	CCSGG	1 cut(s)	395
AsuHPI	GGTGA	2 cut(s)	124, 131
AsuNHI	GCTAGC	1 cut(s)	406
BaeI	ACNNNNGTAYC	2 cut(s)	422, 455
BanII	GRGCYC	1 cut(s)	798
BbsI	GAAGAC	2 cut(s)	291, 1154
Bbv12I	GWGCWC	1 cut(s)	798
BbvI	GCAGC	2 cut(s)	875, 940
BccI	CCATC	2 cut(s)	475, 1057
BceAI	ACGGC	3 cut(s)	77, 233, 531
BciT130I	CCWGG	1 cut(s)	1117
BclI	TGATCA	1 cut(s)	598
BcnI	CCSGG	1 cut(s)	395
BcoDI	GTCTC	1 cut(s)	992
BfaI	CTAG	4 cut(s)	317, 407, 677, 1068
BfuAI	ACCTGC	1 cut(s)	737
BglII	AGATCT	1 cut(s)	49
BisI	GCNGC	3 cut(s)	90, 889, 954
BlpI	GCTNAGC	1 cut(s)	411
BlsI	GCNGC	3 cut(s)	91, 890, 955
BmcAI	AGTACT	1 cut(s)	785
Bme1390I	CCNGG	2 cut(s)	395, 1117
BmgT120I	GGNCC	1 cut(s)	989
BmiI	GGNNCC	2 cut(s)	991, 1121
BmrFI	CCNGG	2 cut(s)	395, 1117
BmsI	GCATC	3 cut(s)	76, 146, 527
BmtI	GCTAGC	1 cut(s)	410
BpiI	GAAGAC	2 cut(s)	291, 1154
BplI	GAGNNNNNCTC	2 cut(s)	89, 121
BpmI	CTGGAG	1 cut(s)	1026
Bpu1102I	GCTNAGC	1 cut(s)	411
BpuEI	CTTGAG	1 cut(s)	868
BpuMI	CCSGG	1 cut(s)	395
Bsa29I	ATCGAT	1 cut(s)	672
BsaBI	GATNNNNATC	1 cut(s)	29
BsaJI	CCNNGG	3 cut(s)	215, 912, 993
BsaWI	WCCGGW	1 cut(s)	176
Bsc4I	CCNNNNNNNGG	2 cut(s)	53, 394
Bse3DI	GCAATG	2 cut(s)	344, 954
Bse8I	GATNNNNATC	1 cut(s)	29
BseBI	CCWGG	1 cut(s)	1117
BseCI	ATCGAT	1 cut(s)	672
BseDI	CCNNGG	3 cut(s)	215, 912, 993
BseGI	GGATG	4 cut(s)	43, 441, 486, 922
BseJI	GATNNNNATC	1 cut(s)	29
BseLI	CCNNNNNNNGG	2 cut(s)	53, 394
BseMI	GCAATG	2 cut(s)	344, 954
BseMII	CTCAG	3 cut(s)	713, 811, 1077
BseRI	GAGGAG	1 cut(s)	806
BseX3I	CGGCCG	1 cut(s)	90
BseXI	GCAGC	2 cut(s)	875, 940
BseYI	CCCAGC	1 cut(s)	568
Bsh1285I	CGRYCG	1 cut(s)	93
BshFI	GGCC	2 cut(s)	92, 990
BshVI	ATCGAT	1 cut(s)	672
BsiEI	CGRYCG	1 cut(s)	93
BsiHKAI	GWGCWC	1 cut(s)	798
BsiSI	CCGG	2 cut(s)	177, 395
BslFI	GGGAC	1 cut(s)	326
BslI	CCNNNNNNNGG	2 cut(s)	53, 394
BsmAI	GTCTC	1 cut(s)	992
BsmBI	CGTCTC	1 cut(s)	992
BsmFI	GGGAC	1 cut(s)	326
BsnI	GGCC	2 cut(s)	92, 990
Bsp1286I	GDGCHC	1 cut(s)	798
Bsp143I	GATC	7 cut(s)	49, 203, 397, 492, 598, 673, 829
Bsp1720I	GCTNAGC	1 cut(s)	411
BspACI	CCGC	6 cut(s)	63, 89, 259, 585, 649, 861
BspANI	GGCC	2 cut(s)	92, 990
BspCNI	CTCAG	3 cut(s)	714, 810, 1078
BspDI	ATCGAT	1 cut(s)	672
BspLI	GGNNCC	2 cut(s)	991, 1121
BspMI	ACCTGC	1 cut(s)	737
BspOI	GCTAGC	1 cut(s)	410
BspPI	GGATC	3 cut(s)	211, 405, 487
BsrDI	GCAATG	2 cut(s)	344, 954
BssECI	CCNNGG	3 cut(s)	215, 912, 993
BssMI	GATC	7 cut(s)	49, 203, 397, 492, 598, 673, 829
Bst2UI	CCWGG	1 cut(s)	1117
Bst4CI	ACNGT	6 cut(s)	113, 196, 506, 742, 983, 1003
BstAPI	GCANNNNNTGC	2 cut(s)	248, 953
BstC8I	GCNNGC	3 cut(s)	102, 408, 976
BstDEI	CTNAG	6 cut(s)	369, 411, 428, 722, 797, 1086
BstDSI	CCRYGG	3 cut(s)	215, 912, 993
BstF5I	GGATG	4 cut(s)	43, 441, 486, 922
BstKTI	GATC	7 cut(s)	52, 206, 400, 495, 601, 676, 832
BstMAI	GTCTC	1 cut(s)	992
BstMBI	GATC	7 cut(s)	49, 203, 397, 492, 598, 673, 829
BstMCI	CGRYCG	1 cut(s)	93
BstMWI	GCNNNNNNNGC	6 cut(s)	106, 248, 412, 686, 894, 953
BstNI	CCWGG	1 cut(s)	1117
BstSCI	CCNGG	2 cut(s)	393, 1115
BstV1I	GCAGC	2 cut(s)	875, 940
BstV2I	GAAGAC	2 cut(s)	291, 1154
BstX2I	RGATCY	3 cut(s)	49, 203, 397
BstYI	RGATCY	3 cut(s)	49, 203, 397
BstZI	CGGCCG	1 cut(s)	90
Bsu15I	ATCGAT	1 cut(s)	672
BsuRI	GGCC	2 cut(s)	92, 990
BsuTUI	ATCGAT	1 cut(s)	672
BtgI	CCRYGG	3 cut(s)	215, 912, 993
BtgZI	GCGATG	2 cut(s)	16, 1076
BtsCI	GGATG	4 cut(s)	43, 441, 486, 922
BtsI	GCAGTG	1 cut(s)	249
BtsIMutI	CAGTG	2 cut(s)	249, 988
BveI	ACCTGC	1 cut(s)	737
Cac8I	GCNNGC	3 cut(s)	102, 408, 976
Cfr13I	GGNCC	1 cut(s)	989
ClaI	ATCGAT	1 cut(s)	672
Csp6I	GTAC	3 cut(s)	314, 575, 784
CspCI	CAANNNNNGTGG	2 cut(s)	967, 1002
CviAII	CATG	1 cut(s)	1124
CviQI	GTAC	3 cut(s)	314, 575, 784
DdeI	CTNAG	6 cut(s)	369, 411, 428, 722, 797, 1086
DpnI	GATC	7 cut(s)	51, 205, 399, 494, 600, 675, 831
DpnII	GATC	7 cut(s)	49, 203, 397, 492, 598, 673, 829
DraI	TTTAAA	1 cut(s)	541
DraIII	CACNNNGTG	1 cut(s)	244
EaeI	YGGCCR	1 cut(s)	90
EagI	CGGCCG	1 cut(s)	90
EciI	GGCGGA	1 cut(s)	78
Ecl136II	GAGCTC	1 cut(s)	796
EclXI	CGGCCG	1 cut(s)	90
Eco24I	GRGCYC	1 cut(s)	798
Eco52I	CGGCCG	1 cut(s)	90
Eco53kI	GAGCTC	1 cut(s)	796
Eco57I	CTGAAG	1 cut(s)	1131
EcoICRI	GAGCTC	1 cut(s)	796
EcoRII	CCWGG	1 cut(s)	1115
EcoT38I	GRGCYC	1 cut(s)	798
Esp3I	CGTCTC	1 cut(s)	992
FaeI	CATG	1 cut(s)	1127
FaqI	GGGAC	1 cut(s)	326
FatI	CATG	1 cut(s)	1123
FauI	CCCGC	1 cut(s)	592
FbaI	TGATCA	1 cut(s)	598
Fnu4HI	GCNGC	3 cut(s)	90, 889, 954
FokI	GGATG	4 cut(s)	30, 448, 493, 929
FriOI	GRGCYC	1 cut(s)	798
Fsp4HI	GCNGC	3 cut(s)	90, 889, 954
FspBI	CTAG	4 cut(s)	317, 407, 677, 1068
GluI	GCNGC	3 cut(s)	90, 889, 954
GsaI	CCCAGC	1 cut(s)	572
GsuI	CTGGAG	1 cut(s)	1026
HaeIII	GGCC	2 cut(s)	92, 990
HapII	CCGG	2 cut(s)	177, 395
Hin1II	CATG	1 cut(s)	1127
HincII	GTYRAC	2 cut(s)	502, 838
HindII	GTYRAC	2 cut(s)	502, 838
HinfI	GANTC	5 cut(s)	562, 1071, 1081, 1133, 1168
HpaI	GTTAAC	2 cut(s)	502, 838
HpaII	CCGG	2 cut(s)	177, 395
HphI	GGTGA	2 cut(s)	124, 131
Hpy166II	GTNNAC	3 cut(s)	502, 838, 1034
Hpy188I	TCNGA	4 cut(s)	444, 723, 800, 829
Hpy188III	TCNNGA	5 cut(s)	47, 153, 1043, 1078, 1085
Hpy8I	GTNNAC	3 cut(s)	502, 838, 1034
HpyAV	CCTTC	3 cut(s)	8, 763, 812
HpyCH4III	ACNGT	6 cut(s)	113, 196, 506, 742, 983, 1003
HpyCH4IV	ACGT	1 cut(s)	1151
HpyCH4V	TGCA	6 cut(s)	251, 554, 705, 746, 956, 978
HpyF10VI	GCNNNNNNNGC	6 cut(s)	106, 248, 412, 686, 894, 953
HpyF3I	CTNAG	6 cut(s)	369, 411, 428, 722, 797, 1086
HpySE526I	ACGT	1 cut(s)	1151
Hsp92II	CATG	1 cut(s)	1127
Ksp22I	TGATCA	1 cut(s)	598
KspAI	GTTAAC	2 cut(s)	502, 838
Kzo9I	GATC	7 cut(s)	49, 203, 397, 492, 598, 673, 829
LmnI	GCTCC	3 cut(s)	65, 793, 1106
Lsp1109I	GCAGC	2 cut(s)	875, 940
LweI	GCATC	3 cut(s)	76, 146, 527
MaeI	CTAG	4 cut(s)	317, 407, 677, 1068
MaeII	ACGT	1 cut(s)	1151
MaeIII	GTNAC	4 cut(s)	190, 506, 730, 1015
MalI	GATC	7 cut(s)	51, 205, 399, 494, 600, 675, 831
MboI	GATC	7 cut(s)	49, 203, 397, 492, 598, 673, 829
MboII	GAAGA	5 cut(s)	121, 291, 476, 1058, 1159
MflI	RGATCY	3 cut(s)	49, 203, 397
MhlI	GDGCHC	1 cut(s)	798
MluCI	AATT	1 cut(s)	631
MlyI	GAGTC	1 cut(s)	571
MnlI	CCTC	6 cut(s)	115, 145, 157, 647, 651, 784
MseI	TTAA	3 cut(s)	501, 540, 837
MspA1I	CMGCKG	2 cut(s)	572, 863
MspI	CCGG	2 cut(s)	177, 395
MspR9I	CCNGG	2 cut(s)	395, 1117
MvaI	CCWGG	1 cut(s)	1117
MwoI	GCNNNNNNNGC	6 cut(s)	106, 248, 412, 686, 894, 953
NciI	CCSGG	1 cut(s)	395
NdeII	GATC	7 cut(s)	49, 203, 397, 492, 598, 673, 829
NheI	GCTAGC	1 cut(s)	406
NlaIII	CATG	1 cut(s)	1127
NlaIV	GGNNCC	2 cut(s)	991, 1121
NmeAIII	GCCGAG	1 cut(s)	835
PaqCI	CACCTGC	1 cut(s)	737
PcsI	WCGNNNNNNNCGW	1 cut(s)	1185
PfeI	GAWTC	4 cut(s)	1071, 1081, 1133, 1168
PflMI	CCANNNNNTGG	1 cut(s)	53
PfoI	TCCNGGA	1 cut(s)	393
PkrI	GCNGC	3 cut(s)	91, 890, 955
PleI	GAGTC	1 cut(s)	570
PpsI	GAGTC	1 cut(s)	570
PsiI	TTATAA	1 cut(s)	624
Psp124BI	GAGCTC	1 cut(s)	798
Psp6I	CCWGG	1 cut(s)	1115
PspFI	CCCAGC	1 cut(s)	568
PspGI	CCWGG	1 cut(s)	1115
PspN4I	GGNNCC	2 cut(s)	991, 1121
PspPI	GGNCC	1 cut(s)	989
PsuI	RGATCY	3 cut(s)	49, 203, 397
PvuII	CAGCTG	1 cut(s)	572
RsaI	GTAC	3 cut(s)	315, 576, 785
RsaNI	GTAC	3 cut(s)	314, 575, 784
SacI	GAGCTC	1 cut(s)	798
SaqAI	TTAA	3 cut(s)	501, 540, 837
SatI	GCNGC	3 cut(s)	90, 889, 954
Sau3AI	GATC	7 cut(s)	49, 203, 397, 492, 598, 673, 829
Sau96I	GGNCC	1 cut(s)	989
ScaI	AGTACT	1 cut(s)	785
SchI	GAGTC	1 cut(s)	571
ScrFI	CCNGG	2 cut(s)	395, 1117
SduI	GDGCHC	1 cut(s)	798
SfaNI	GCATC	3 cut(s)	76, 146, 527
SmlI	CTYRAG	1 cut(s)	883
SmoI	CTYRAG	1 cut(s)	883
Sse9I	AATT	1 cut(s)	631
SsiI	CCGC	6 cut(s)	63, 89, 259, 585, 649, 861
SspI	AATATT	1 cut(s)	595
SspMI	CTAG	4 cut(s)	317, 407, 677, 1068
SstI	GAGCTC	1 cut(s)	798
StyD4I	CCNGG	2 cut(s)	393, 1115
TaaI	ACNGT	6 cut(s)	113, 196, 506, 742, 983, 1003
TaiI	ACGT	1 cut(s)	1154
TaqI	TCGA	5 cut(s)	162, 306, 672, 832, 1077
TasI	AATT	1 cut(s)	631
TatI	WGTACW	3 cut(s)	313, 574, 783
TauI	GCSGC	1 cut(s)	92
TfiI	GAWTC	4 cut(s)	1071, 1081, 1133, 1168
Tru1I	TTAA	3 cut(s)	501, 540, 837
Tru9I	TTAA	3 cut(s)	501, 540, 837
TscAI	CASTG	2 cut(s)	249, 988
TseI	GCWGC	2 cut(s)	888, 953
TspDTI	ATGAA	8 cut(s)	41, 113, 291, 448, 595, 888, 933, 1063
TspGWI	ACGGA	2 cut(s)	448, 929
TspRI	CASTG	2 cut(s)	249, 988
Van91I	CCANNNNNTGG	1 cut(s)	53
XapI	RAATTY	1 cut(s)	631
XspI	CTAG	4 cut(s)	317, 407, 677, 1068
ZrmI	AGTACT	1 cut(s)	785

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.