Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0004054

Physical Location & Seq

Genomic Coordinates Forward (+)

69767756 .. 69770763

Gene Structure 3008 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00049550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGCGAAGAGAGGAGGAAGCTCAAAGTTGAACGTCGCTGTTATTCATCCCGATCTGGGTATAGGAGGAGCAGAGAGACTGATTGTGGATGCGGCTGTTGAGCTCGCATCGCATGGCCATAAAGTTCACGTCTTTACCTCACACCATGATAAAAATCGATGCTTTGAGGAGACCATCTCTGGTGCCTTTCCTGTCACTGTGTACGGTGCTTTCCTACCCCGACATGTATTCTATCGTCTTCATGCTTTGTGTGCATACCTGCGGTGCCTGTATGTTGCCCTCTGCGTGCTAGTCATGTGGCCGTCTTTTGATGTAATACTAGTAGATCAGGTTTCTGTTGTCATCCCATTGCTGAAGCTTAAGAAGTCGGCAAAGGTGTTGTTTTATTGTCATTTTCCAGATTTATTGCTCGCTCAACACACAACTATTCTGAGGAGGATATATAGAAAACCCATAGACTTCATAGAAGAAATGACAACTGGAATGGCAGATAAAATTCTTGTTAACAGCAAATTTACAGCAGTTACATTTGCAAAGACATTCAAGCATCTTGATGCACGAGGAATTAAGCCAGCTGTTCTTTACCCAGCTGTCAATGTGAATCAATTCGATGAACCTAGCAATTCTCCCAAGTTAAATTTTCTCTCCATCAACCGTTATGAGAGGAAAAAGAATATGGACTTGGCAATTTCAGCTTTTGCCATGCTTCGCACCCTTGAAGGAGATATGCTTCAAGGTCTTAATCTGGCTGAAGCTTCCTTGACAATTGCAGGCAAGTTCCTACTTATCTTCCTTGACAATTGCAGGCGGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 map00510 map00513 map01100

Pfam Domains

Protein Families

Glyco_transf_4 Glycos_transf_1

Protein Analysis

271

Amino Acids

30.45

Weight (kDa)

9.36

Isoelectric Point (pI)

27.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_4	PF13439	21 - 200	6e-14	Glycosyltransferase Family 4
Glyco_trans_4_4	PF13579	22 - 174	2.1e-06	Glycosyl transferase 4-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004054)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78800
fragaria_vesca	FvH4_3g18220 FvH4_3g18220
malus_domestica	MD00G1077500.v1.1 MD00G1078000.v1.1 MD03G1178900.v1.1 MD11G1264500.v1.1
prunus_persica	Prupe.4G169100_v2.0.a1 Prupe.4G241400_v2.0.a1 Prupe.4G241400_v2.0.a1 Prupe.4G241400_v2.0.a1 Prupe.5G052700_v2.0.a1 Prupe.5G052700_v2.0.a1 Prupe.5G052700_v2.0.a1 Prupe.5G052700_v2.0.a1 Prupe.5G052700_v2.0.a1 Prupe.5G052700_v2.0.a1
pyrus_communis	pycom11g23280
rosa_chinensis	RchiOBHm_Chr5g0030771
rosa_laevigata	RLG00000033250
rosa_multiflora	Rmu_sc0009742.1_g000012 Rmu_sc0021923.1_g000002
rosa_roxburghii	Rroxscaffold_1G00049550
rosa_rugosa	Rorug05G0120600 Rorug05G0120700
rosa_samantha	Rh1AG151000 Rh1CG142200 Rh5AG212700 Rh5BG212000 Rh5CG235200 Rh5DG216800
rosa_wichuraiana	Rw1G012370 Rw5G019480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	267
AccB1I	GGYRCC	2 cut(s)	182, 264
AciI	CCGC	3 cut(s)	92, 262, 808
AcoI	YGGCCR	2 cut(s)	115, 299
AcsI	RAATTY	3 cut(s)	495, 512, 637
AcuI	CTGAAG	2 cut(s)	374, 771
AfaI	GTAC	1 cut(s)	203
AfiI	CCNNNNNNNGG	1 cut(s)	56
AflII	CTTAAG	1 cut(s)	359
AflIII	ACRYGT	1 cut(s)	223
AgsI	TTSAA	4 cut(s)	31, 544, 719, 734
AhlI	ACTAGT	1 cut(s)	319
AjiI	CACGTC	1 cut(s)	130
AjuI	GAANNNNNNNTTGG	2 cut(s)	665, 697
AluBI	AGCT	7 cut(s)	21, 103, 358, 575, 590, 695, 755
AluI	AGCT	7 cut(s)	21, 103, 358, 575, 590, 695, 755
Alw21I	GWGCWC	1 cut(s)	105
Alw26I	GTCTC	2 cut(s)	70, 164
AoxI	GGCC	2 cut(s)	115, 299
ApoI	RAATTY	3 cut(s)	495, 512, 637
Asp700I	GAANNNNTTC	1 cut(s)	605
BalI	TGGCCA	1 cut(s)	117
BanI	GGYRCC	2 cut(s)	182, 264
BanII	GRGCYC	1 cut(s)	105
BauI	CACGAG	1 cut(s)	558
BbsI	GAAGAC	1 cut(s)	230
Bbv12I	GWGCWC	1 cut(s)	105
BccI	CCATC	2 cut(s)	182, 656
BceAI	ACGGC	1 cut(s)	286
BcoDI	GTCTC	2 cut(s)	70, 164
BcuI	ACTAGT	1 cut(s)	319
BfaI	CTAG	3 cut(s)	290, 320, 618
BfrI	CTTAAG	1 cut(s)	359
BfuAI	ACCTGC	1 cut(s)	267
BisI	GCNGC	2 cut(s)	93, 809
BlsI	GCNGC	2 cut(s)	94, 810
BmgBI	CACGTC	1 cut(s)	130
BmiI	GGNNCC	2 cut(s)	184, 266
BmsI	GCATC	5 cut(s)	79, 116, 149, 544, 556
BpiI	GAAGAC	1 cut(s)	230
BplI	GAGNNNNNCTC	2 cut(s)	161, 193
Bsa29I	ATCGAT	1 cut(s)	157
BsaBI	GATNNNNATC	1 cut(s)	153
BsaI	GGTCTC	1 cut(s)	164
Bsc4I	CCNNNNNNNGG	1 cut(s)	56
Bse1I	ACTGG	1 cut(s)	484
Bse3DI	GCAATG	1 cut(s)	347
Bse8I	GATNNNNATC	1 cut(s)	153
BseCI	ATCGAT	1 cut(s)	157
BseGI	GGATG	3 cut(s)	46, 94, 342
BseJI	GATNNNNATC	1 cut(s)	153
BseLI	CCNNNNNNNGG	1 cut(s)	56
BseMI	GCAATG	1 cut(s)	347
BseMII	CTCAG	1 cut(s)	422
BseNI	ACTGG	1 cut(s)	484
BseRI	GAGGAG	4 cut(s)	27, 81, 182, 448
BseYI	CCCAGC	1 cut(s)	586
BshFI	GGCC	2 cut(s)	117, 301
BshNI	GGYRCC	2 cut(s)	182, 264
BshVI	ATCGAT	1 cut(s)	157
BsiHKAI	GWGCWC	1 cut(s)	105
BslI	CCNNNNNNNGG	1 cut(s)	56
BsmAI	GTCTC	2 cut(s)	70, 164
BsnI	GGCC	2 cut(s)	117, 301
Bso31I	GGTCTC	1 cut(s)	164
Bsp1286I	GDGCHC	1 cut(s)	105
Bsp143I	GATC	2 cut(s)	52, 325
BspACI	CCGC	3 cut(s)	92, 262, 808
BspANI	GGCC	2 cut(s)	117, 301
BspCNI	CTCAG	1 cut(s)	423
BspDI	ATCGAT	1 cut(s)	157
BspLI	GGNNCC	2 cut(s)	184, 266
BspMI	ACCTGC	1 cut(s)	267
BspT107I	GGYRCC	2 cut(s)	182, 264
BspTI	CTTAAG	1 cut(s)	359
BspTNI	GGTCTC	1 cut(s)	164
BsrDI	GCAATG	1 cut(s)	347
BsrI	ACTGG	1 cut(s)	484
BssMI	GATC	2 cut(s)	52, 325
BssSI	CACGAG	1 cut(s)	558
Bst2BI	CACGAG	1 cut(s)	558
Bst4CI	ACNGT	3 cut(s)	199, 206, 656
Bst6I	CTCTTC	1 cut(s)	2
BstAFI	CTTAAG	1 cut(s)	359
BstC8I	GCNNGC	6 cut(s)	105, 287, 411, 573, 772, 806
BstDEI	CTNAG	1 cut(s)	431
BstF5I	GGATG	3 cut(s)	46, 94, 342
BstKTI	GATC	2 cut(s)	55, 328
BstMAI	GTCTC	2 cut(s)	70, 164
BstMBI	GATC	2 cut(s)	52, 325
BstMWI	GCNNNNNNNGC	3 cut(s)	109, 251, 692
BstNSI	RCATGY	1 cut(s)	227
BstV2I	GAAGAC	1 cut(s)	230
Bsu15I	ATCGAT	1 cut(s)	157
BsuRI	GGCC	2 cut(s)	117, 301
BsuTUI	ATCGAT	1 cut(s)	157
BtgZI	GCGATG	1 cut(s)	93
BtrI	CACGTC	1 cut(s)	130
BtsCI	GGATG	3 cut(s)	46, 94, 342
BtsIMutI	CAGTG	1 cut(s)	195
BveI	ACCTGC	1 cut(s)	267
Cac8I	GCNNGC	6 cut(s)	105, 287, 411, 573, 772, 806
ClaI	ATCGAT	1 cut(s)	157
Csp6I	GTAC	1 cut(s)	202
CviAII	CATG	6 cut(s)	113, 146, 224, 242, 295, 703
CviQI	GTAC	1 cut(s)	202
DdeI	CTNAG	1 cut(s)	431
DpnI	GATC	2 cut(s)	54, 327
DpnII	GATC	2 cut(s)	52, 325
EaeI	YGGCCR	2 cut(s)	115, 299
Eam1104I	CTCTTC	1 cut(s)	2
EarI	CTCTTC	1 cut(s)	2
Ecl136II	GAGCTC	1 cut(s)	103
Eco24I	GRGCYC	1 cut(s)	105
Eco31I	GGTCTC	1 cut(s)	164
Eco53kI	GAGCTC	1 cut(s)	103
Eco57I	CTGAAG	2 cut(s)	374, 771
EcoICRI	GAGCTC	1 cut(s)	103
EcoT38I	GRGCYC	1 cut(s)	105
FaeI	CATG	6 cut(s)	116, 149, 227, 245, 298, 706
FatI	CATG	6 cut(s)	112, 145, 223, 241, 294, 702
Fnu4HI	GCNGC	2 cut(s)	93, 809
FokI	GGATG	3 cut(s)	33, 101, 329
FriOI	GRGCYC	1 cut(s)	105
Fsp4HI	GCNGC	2 cut(s)	93, 809
FspBI	CTAG	3 cut(s)	290, 320, 618
GluI	GCNGC	2 cut(s)	93, 809
GsaI	CCCAGC	1 cut(s)	590
HaeIII	GGCC	2 cut(s)	117, 301
Hin1II	CATG	6 cut(s)	116, 149, 227, 245, 298, 706
HincII	GTYRAC	1 cut(s)	505
HindII	GTYRAC	1 cut(s)	505
HindIII	AAGCTT	2 cut(s)	356, 753
HinfI	GANTC	1 cut(s)	601
HpaI	GTTAAC	1 cut(s)	505
Hpy166II	GTNNAC	3 cut(s)	127, 202, 505
Hpy188I	TCNGA	1 cut(s)	432
Hpy188III	TCNNGA	3 cut(s)	50, 398, 551
Hpy8I	GTNNAC	3 cut(s)	127, 202, 505
Hpy99I	CGWCG	1 cut(s)	38
HpyAV	CCTTC	1 cut(s)	713
HpyCH4III	ACNGT	3 cut(s)	199, 206, 656
HpyCH4IV	ACGT	2 cut(s)	33, 129
HpyCH4V	TGCA	5 cut(s)	254, 533, 557, 770, 804
HpyF10VI	GCNNNNNNNGC	3 cut(s)	109, 251, 692
HpyF3I	CTNAG	1 cut(s)	431
HpySE526I	ACGT	2 cut(s)	33, 129
Hsp92II	CATG	6 cut(s)	116, 149, 227, 245, 298, 706
KspAI	GTTAAC	1 cut(s)	505
Kzo9I	GATC	2 cut(s)	52, 325
LmnI	GCTCC	1 cut(s)	68
LweI	GCATC	5 cut(s)	79, 116, 149, 544, 556
MaeI	CTAG	3 cut(s)	290, 320, 618
MaeII	ACGT	2 cut(s)	33, 129
MaeIII	GTNAC	2 cut(s)	193, 523
MalI	GATC	2 cut(s)	54, 327
MboI	GATC	2 cut(s)	52, 325
MboII	GAAGA	4 cut(s)	19, 230, 479, 781
MfeI	CAATTG	2 cut(s)	765, 799
MhlI	GDGCHC	1 cut(s)	105
MlsI	TGGCCA	1 cut(s)	117
MluCI	AATT	9 cut(s)	495, 512, 564, 605, 622, 637, 687, 765, 799
MluNI	TGGCCA	1 cut(s)	117
Mox20I	TGGCCA	1 cut(s)	117
MroXI	GAANNNNTTC	1 cut(s)	605
MscI	TGGCCA	1 cut(s)	117
MseI	TTAA	5 cut(s)	360, 504, 567, 635, 741
MslI	CAYNNNNRTG	1 cut(s)	552
Msp20I	TGGCCA	1 cut(s)	117
MspA1I	CMGCKG	2 cut(s)	575, 590
MspCI	CTTAAG	1 cut(s)	359
MunI	CAATTG	2 cut(s)	765, 799
MwoI	GCNNNNNNNGC	3 cut(s)	109, 251, 692
NdeII	GATC	2 cut(s)	52, 325
NlaIII	CATG	6 cut(s)	116, 149, 227, 245, 298, 706
NlaIV	GGNNCC	2 cut(s)	184, 266
NmuCI	GTSAC	1 cut(s)	193
NspI	RCATGY	1 cut(s)	227
PciI	ACATGT	1 cut(s)	223
PdmI	GAANNNNTTC	1 cut(s)	605
PfeI	GAWTC	1 cut(s)	601
PkrI	GCNGC	2 cut(s)	94, 810
PscI	ACATGT	1 cut(s)	223
Psp124BI	GAGCTC	1 cut(s)	105
PspFI	CCCAGC	1 cut(s)	586
PspN4I	GGNNCC	2 cut(s)	184, 266
PvuII	CAGCTG	2 cut(s)	575, 590
RsaI	GTAC	1 cut(s)	203
RsaNI	GTAC	1 cut(s)	202
RseI	CAYNNNNRTG	1 cut(s)	552
SacI	GAGCTC	1 cut(s)	105
SaqAI	TTAA	5 cut(s)	360, 504, 567, 635, 741
SatI	GCNGC	2 cut(s)	93, 809
Sau3AI	GATC	2 cut(s)	52, 325
SduI	GDGCHC	1 cut(s)	105
SfaNI	GCATC	5 cut(s)	79, 116, 149, 544, 556
SmiMI	CAYNNNNRTG	1 cut(s)	552
SmlI	CTYRAG	1 cut(s)	359
SmoI	CTYRAG	1 cut(s)	359
SpeI	ACTAGT	1 cut(s)	319
Sse9I	AATT	9 cut(s)	495, 512, 564, 605, 622, 637, 687, 765, 799
SsiI	CCGC	3 cut(s)	92, 262, 808
SspMI	CTAG	3 cut(s)	290, 320, 618
SstI	GAGCTC	1 cut(s)	105
TaaI	ACNGT	3 cut(s)	199, 206, 656
TaiI	ACGT	2 cut(s)	36, 132
TaqI	TCGA	2 cut(s)	157, 609
TasI	AATT	9 cut(s)	495, 512, 564, 605, 622, 637, 687, 765, 799
TauI	GCSGC	2 cut(s)	95, 811
TfiI	GAWTC	1 cut(s)	601
Tru1I	TTAA	5 cut(s)	360, 504, 567, 635, 741
Tru9I	TTAA	5 cut(s)	360, 504, 567, 635, 741
TscAI	CASTG	1 cut(s)	202
TseFI	GTSAC	1 cut(s)	193
Tsp45I	GTSAC	1 cut(s)	193
TspDTI	ATGAA	4 cut(s)	35, 230, 451, 627
TspRI	CASTG	1 cut(s)	202
Vha464I	CTTAAG	1 cut(s)	359
XapI	RAATTY	3 cut(s)	495, 512, 637
XceI	RCATGY	1 cut(s)	227
XmnI	GAANNNNTTC	1 cut(s)	605
XspI	CTAG	3 cut(s)	290, 320, 618

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.