Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009742.1

Orthogroup ID

OG0004054

Physical Location & Seq

Genomic Coordinates Forward (+)

58893 .. 60080

Gene Structure 1188 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009742.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

atgtcagcctcttctaaattatgggtggaatcagaaaccttaaataggatttgcatggatatggatgttaggctttcgggtgcctttcctgttactgtgtacggtgcttttctaccccgacatgtattctatcgtcttcatgctttgtgtgcatacctacggtgcctgtatgttgccctctgcgtgctagtcatgtggccgtcttttgatgtaatactagtagatcaggtttctgttgtcatcccattgctgaagcttaagaagtcggcaaaggtgttgttttattgtcattttccagatttgttgctcgctcaacacacaactattctgaggaggatatatagaaaacccatagacttcatagaagaaatgacaactggaatggcagataagattcttgttaacagcaaatttacagcacttacatttgcaaggacattcaagcatcttgatgcacaaggaattaagccagctgttcttcacccagctgtcaatgtgaatcaattcgatgaacctagcaattctcctaagttaaattttctctccatcaaccgttttgagaggaaaaagaatatagacttggcaatttcagctttttccatgcttcgcacccttgaaggagatatgcttcaaggtcttaatctggctgaagcttccttgacaattgcaggcaagttcctacttattttctgtccgactagtcttactgacagagaccccatactaactagtagataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 map00510 map00513 map01100

Pfam Domains

Protein Families

Glyco_transf_4 Glycos_transf_1

Protein Analysis

245

Amino Acids

27.76

Weight (kDa)

9.15

Isoelectric Point (pI)

35.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004054)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78800
fragaria_vesca	FvH4_3g18220 FvH4_3g18220
malus_domestica	MD00G1077500.v1.1 MD00G1078000.v1.1 MD03G1178900.v1.1 MD11G1264500.v1.1
prunus_persica	Prupe.4G169100_v2.0.a1 Prupe.4G241400_v2.0.a1 Prupe.4G241400_v2.0.a1 Prupe.4G241400_v2.0.a1 Prupe.5G052700_v2.0.a1 Prupe.5G052700_v2.0.a1 Prupe.5G052700_v2.0.a1 Prupe.5G052700_v2.0.a1 Prupe.5G052700_v2.0.a1 Prupe.5G052700_v2.0.a1
pyrus_communis	pycom11g23280
rosa_chinensis	RchiOBHm_Chr5g0030771
rosa_laevigata	RLG00000033250
rosa_multiflora	Rmu_sc0009742.1_g000012 Rmu_sc0021923.1_g000002
rosa_roxburghii	Rroxscaffold_1G00049550
rosa_rugosa	Rorug05G0120600 Rorug05G0120700
rosa_samantha	Rh1AG151000 Rh1CG142200 Rh5AG212700 Rh5BG212000 Rh5CG235200 Rh5DG216800
rosa_wichuraiana	Rw1G012370 Rw5G019480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	80, 162
AcoI	YGGCCR	1 cut(s)	197
AcsI	RAATTY	2 cut(s)	410, 535
AcuI	CTGAAG	2 cut(s)	272, 669
AfaI	GTAC	1 cut(s)	101
AfiI	CCNNNNNNNGG	1 cut(s)	45
AflII	CTTAAG	1 cut(s)	257
AflIII	ACRYGT	1 cut(s)	121
AgsI	TTSAA	3 cut(s)	442, 617, 632
AhlI	ACTAGT	3 cut(s)	217, 698, 728
AjuI	GAANNNNNNNTTGG	2 cut(s)	563, 595
AluBI	AGCT	5 cut(s)	256, 473, 488, 593, 653
AluI	AGCT	5 cut(s)	256, 473, 488, 593, 653
Alw26I	GTCTC	1 cut(s)	708
AoxI	GGCC	1 cut(s)	197
ApoI	RAATTY	2 cut(s)	410, 535
Asp700I	GAANNNNTTC	1 cut(s)	503
AsuHPI	GGTGA	1 cut(s)	473
BanI	GGYRCC	2 cut(s)	80, 162
BbsI	GAAGAC	1 cut(s)	128
BccI	CCATC	1 cut(s)	554
BceAI	ACGGC	1 cut(s)	184
BcoDI	GTCTC	1 cut(s)	708
BcuI	ACTAGT	3 cut(s)	217, 698, 728
BfaI	CTAG	5 cut(s)	188, 218, 516, 699, 729
BfrI	CTTAAG	1 cut(s)	257
BmiI	GGNNCC	2 cut(s)	82, 164
BmsI	GCATC	2 cut(s)	442, 454
BpiI	GAAGAC	1 cut(s)	128
BsaI	GGTCTC	1 cut(s)	708
Bsc4I	CCNNNNNNNGG	1 cut(s)	45
Bse1I	ACTGG	1 cut(s)	382
Bse3DI	GCAATG	1 cut(s)	245
BseGI	GGATG	2 cut(s)	70, 240
BseLI	CCNNNNNNNGG	1 cut(s)	45
BseMI	GCAATG	1 cut(s)	245
BseMII	CTCAG	1 cut(s)	320
BseNI	ACTGG	1 cut(s)	382
BseRI	GAGGAG	1 cut(s)	346
BseYI	CCCAGC	1 cut(s)	484
BshFI	GGCC	1 cut(s)	199
BshNI	GGYRCC	2 cut(s)	80, 162
BslI	CCNNNNNNNGG	1 cut(s)	45
BsmAI	GTCTC	1 cut(s)	708
BsnI	GGCC	1 cut(s)	199
Bso31I	GGTCTC	1 cut(s)	708
Bsp143I	GATC	1 cut(s)	223
BspANI	GGCC	1 cut(s)	199
BspCNI	CTCAG	1 cut(s)	321
BspLI	GGNNCC	2 cut(s)	82, 164
BspT107I	GGYRCC	2 cut(s)	80, 162
BspTI	CTTAAG	1 cut(s)	257
BspTNI	GGTCTC	1 cut(s)	708
BsrDI	GCAATG	1 cut(s)	245
BsrI	ACTGG	1 cut(s)	382
BssMI	GATC	1 cut(s)	223
Bst4CI	ACNGT	4 cut(s)	97, 104, 162, 554
Bst6I	CTCTTC	1 cut(s)	16
BstAFI	CTTAAG	1 cut(s)	257
BstC8I	GCNNGC	4 cut(s)	185, 309, 471, 670
BstDEI	CTNAG	2 cut(s)	329, 528
BstENI	CCTNNNNNAGG	1 cut(s)	43
BstF5I	GGATG	2 cut(s)	70, 240
BstKTI	GATC	1 cut(s)	226
BstMAI	GTCTC	1 cut(s)	708
BstMBI	GATC	1 cut(s)	223
BstMWI	GCNNNNNNNGC	2 cut(s)	149, 590
BstNSI	RCATGY	1 cut(s)	125
BstV2I	GAAGAC	1 cut(s)	128
BsuRI	GGCC	1 cut(s)	199
BtsCI	GGATG	2 cut(s)	70, 240
Cac8I	GCNNGC	4 cut(s)	185, 309, 471, 670
Csp6I	GTAC	1 cut(s)	100
CviAII	CATG	5 cut(s)	55, 122, 140, 193, 601
CviQI	GTAC	1 cut(s)	100
DdeI	CTNAG	2 cut(s)	329, 528
DpnI	GATC	1 cut(s)	225
DpnII	GATC	1 cut(s)	223
EaeI	YGGCCR	1 cut(s)	197
Eam1104I	CTCTTC	1 cut(s)	16
EarI	CTCTTC	1 cut(s)	16
Eco31I	GGTCTC	1 cut(s)	708
Eco57I	CTGAAG	2 cut(s)	272, 669
EcoNI	CCTNNNNNAGG	1 cut(s)	43
FaeI	CATG	5 cut(s)	58, 125, 143, 196, 604
FatI	CATG	5 cut(s)	54, 121, 139, 192, 600
FokI	GGATG	2 cut(s)	77, 227
FspBI	CTAG	5 cut(s)	188, 218, 516, 699, 729
GsaI	CCCAGC	1 cut(s)	488
HaeIII	GGCC	1 cut(s)	199
Hin1II	CATG	5 cut(s)	58, 125, 143, 196, 604
HincII	GTYRAC	1 cut(s)	403
HindII	GTYRAC	1 cut(s)	403
HindIII	AAGCTT	2 cut(s)	254, 651
HinfI	GANTC	3 cut(s)	29, 394, 499
HpaI	GTTAAC	1 cut(s)	403
HphI	GGTGA	1 cut(s)	473
Hpy166II	GTNNAC	2 cut(s)	100, 403
Hpy188I	TCNGA	3 cut(s)	34, 330, 696
Hpy188III	TCNNGA	2 cut(s)	296, 449
Hpy8I	GTNNAC	2 cut(s)	100, 403
HpyAV	CCTTC	1 cut(s)	611
HpyCH4III	ACNGT	4 cut(s)	97, 104, 162, 554
HpyCH4V	TGCA	5 cut(s)	54, 152, 431, 455, 668
HpyF10VI	GCNNNNNNNGC	2 cut(s)	149, 590
HpyF3I	CTNAG	2 cut(s)	329, 528
Hsp92II	CATG	5 cut(s)	58, 125, 143, 196, 604
KspAI	GTTAAC	1 cut(s)	403
Kzo9I	GATC	1 cut(s)	223
LpnPI	CCDG	9 cut(s)	102, 179, 212, 309, 363, 483, 498, 629, 654
LweI	GCATC	2 cut(s)	442, 454
MaeI	CTAG	5 cut(s)	188, 218, 516, 699, 729
MaeIII	GTNAC	1 cut(s)	91
MalI	GATC	1 cut(s)	225
MboI	GATC	1 cut(s)	223
MboII	GAAGA	4 cut(s)	3, 128, 377, 470
MfeI	CAATTG	1 cut(s)	663
MluCI	AATT	8 cut(s)	17, 410, 462, 503, 520, 535, 585, 663
MmeI	TCCRAC	1 cut(s)	719
MnlI	CCTC	5 cut(s)	19, 188, 324, 327, 555
MroXI	GAANNNNTTC	1 cut(s)	503
MseI	TTAA	6 cut(s)	41, 258, 402, 465, 533, 639
MslI	CAYNNNNRTG	2 cut(s)	59, 450
MspA1I	CMGCKG	2 cut(s)	473, 488
MspCI	CTTAAG	1 cut(s)	257
MunI	CAATTG	1 cut(s)	663
MwoI	GCNNNNNNNGC	2 cut(s)	149, 590
NdeII	GATC	1 cut(s)	223
NlaIII	CATG	5 cut(s)	58, 125, 143, 196, 604
NlaIV	GGNNCC	2 cut(s)	82, 164
NspI	RCATGY	1 cut(s)	125
PciI	ACATGT	1 cut(s)	121
PdmI	GAANNNNTTC	1 cut(s)	503
PfeI	GAWTC	3 cut(s)	29, 394, 499
PscI	ACATGT	1 cut(s)	121
PspFI	CCCAGC	1 cut(s)	484
PspN4I	GGNNCC	2 cut(s)	82, 164
PvuII	CAGCTG	2 cut(s)	473, 488
RsaI	GTAC	1 cut(s)	101
RsaNI	GTAC	1 cut(s)	100
RseI	CAYNNNNRTG	2 cut(s)	59, 450
SaqAI	TTAA	6 cut(s)	41, 258, 402, 465, 533, 639
Sau3AI	GATC	1 cut(s)	223
SfaNI	GCATC	2 cut(s)	442, 454
SmiMI	CAYNNNNRTG	2 cut(s)	59, 450
SmlI	CTYRAG	1 cut(s)	257
SmoI	CTYRAG	1 cut(s)	257
SpeI	ACTAGT	3 cut(s)	217, 698, 728
Sse9I	AATT	8 cut(s)	17, 410, 462, 503, 520, 535, 585, 663
SspMI	CTAG	5 cut(s)	188, 218, 516, 699, 729
TaaI	ACNGT	4 cut(s)	97, 104, 162, 554
TaqI	TCGA	1 cut(s)	507
TasI	AATT	8 cut(s)	17, 410, 462, 503, 520, 535, 585, 663
TfiI	GAWTC	3 cut(s)	29, 394, 499
Tru1I	TTAA	6 cut(s)	41, 258, 402, 465, 533, 639
Tru9I	TTAA	6 cut(s)	41, 258, 402, 465, 533, 639
TspDTI	ATGAA	3 cut(s)	128, 349, 525
Vha464I	CTTAAG	1 cut(s)	257
XagI	CCTNNNNNAGG	1 cut(s)	43
XapI	RAATTY	2 cut(s)	410, 535
XceI	RCATGY	1 cut(s)	125
XmnI	GAANNNNTTC	1 cut(s)	503
XspI	CTAG	5 cut(s)	188, 218, 516, 699, 729

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.