Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0004054

Physical Location & Seq

Genomic Coordinates Reverse (-)

24584173 .. 24586002

Gene Structure 1830 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1178900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGCGGGGAAGAAAGGAGGCTCCAGGTTGAACGTTGCAATTATTCATCCCGATCGGGGCATCGGTGGAGCTGAAAAACTGATCGTCGACGCGGCTGTCGAACTTGCATCCCATGCTTCCGTTTCTGGTATCTTTCCAGTTACTGTATATTGTGCCTTCCTACCCCGACATATATTCTATCGACTCCATGCTTTGTGTGCATATATATGGTGCTTTGTTGCTCTCTGCATGCTGTTCATGTGGCCATTGTTTGATGTAATACTAGCAGATCAGGTTTCTGTTGTCATCCCACTGCTGAAGCTTAAGAAGGCAACAAAGGAATTTGCTCCTATTTCATGTGAATTGTTATCTGGAATGGCAGATAAGATTCTTGTTAACAGCAAACTCACAGCATCTATGTTTGCGAAGAAATTTAAGCATCTTGACGCACGAGGGATTGAGCCAGCTGTTCTTTATCCAGCTGTCAACGTGAATCAGTTTAATGAACCAGCCAATTCTTACAAGCTAAATTTTCTGTCTATGAATTGTTTTGAGAGGAAAAGAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 map00510 map00513 map01100

Pfam Domains

Protein Families

Glyco_transf_4 Glycos_transf_1

Protein Analysis

183

Amino Acids

20.21

Weight (kDa)

9.28

Isoelectric Point (pI)

24.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004054)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78800
fragaria_vesca	FvH4_3g18220 FvH4_3g18220
malus_domestica	MD00G1077500.v1.1 MD00G1078000.v1.1 MD03G1178900.v1.1 MD11G1264500.v1.1
prunus_persica	Prupe.4G169100_v2.0.a1 Prupe.4G241400_v2.0.a1 Prupe.4G241400_v2.0.a1 Prupe.4G241400_v2.0.a1 Prupe.5G052700_v2.0.a1 Prupe.5G052700_v2.0.a1 Prupe.5G052700_v2.0.a1 Prupe.5G052700_v2.0.a1 Prupe.5G052700_v2.0.a1 Prupe.5G052700_v2.0.a1
pyrus_communis	pycom11g23280
rosa_chinensis	RchiOBHm_Chr5g0030771
rosa_laevigata	RLG00000033250
rosa_multiflora	Rmu_sc0009742.1_g000012 Rmu_sc0021923.1_g000002
rosa_roxburghii	Rroxscaffold_1G00049550
rosa_rugosa	Rorug05G0120600 Rorug05G0120700
rosa_samantha	Rh1AG151000 Rh1CG142200 Rh5AG212700 Rh5BG212000 Rh5CG235200 Rh5DG216800
rosa_wichuraiana	Rw1G012370 Rw5G019480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	95
AccI	GTMKAC	1 cut(s)	87
AccII	CGCG	1 cut(s)	92
AciI	CCGC	2 cut(s)	5, 92
AclI	AACGTT	1 cut(s)	33
AcoI	YGGCCR	1 cut(s)	242
AcsI	RAATTY	3 cut(s)	320, 410, 508
AcuI	CTGAAG	1 cut(s)	317
AfiI	CCNNNNNNNGG	1 cut(s)	56
AflII	CTTAAG	1 cut(s)	302
AgsI	TTSAA	1 cut(s)	31
AjnI	CCWGG	1 cut(s)	23
AluBI	AGCT	5 cut(s)	71, 301, 446, 461, 505
AluI	AGCT	5 cut(s)	71, 301, 446, 461, 505
AlwNI	CAGNNNCTG	1 cut(s)	143
AoxI	GGCC	1 cut(s)	242
ApoI	RAATTY	3 cut(s)	320, 410, 508
BalI	TGGCCA	1 cut(s)	244
BauI	CACGAG	1 cut(s)	429
BciT130I	CCWGG	1 cut(s)	25
BfaI	CTAG	1 cut(s)	263
BfrI	CTTAAG	1 cut(s)	302
BisI	GCNGC	1 cut(s)	93
BlsI	GCNGC	1 cut(s)	94
Bme1390I	CCNGG	1 cut(s)	25
BmiI	GGNNCC	1 cut(s)	22
BmrFI	CCNGG	1 cut(s)	25
BmsI	GCATC	4 cut(s)	69, 116, 401, 427
BpmI	CTGGAG	1 cut(s)	7
Bsc4I	CCNNNNNNNGG	1 cut(s)	56
Bse1I	ACTGG	1 cut(s)	137
BseBI	CCWGG	1 cut(s)	25
BseGI	GGATG	3 cut(s)	46, 107, 285
BseLI	CCNNNNNNNGG	1 cut(s)	56
BseNI	ACTGG	1 cut(s)	137
Bsh1236I	CGCG	1 cut(s)	92
Bsh1285I	CGRYCG	1 cut(s)	55
BshFI	GGCC	1 cut(s)	244
BsiEI	CGRYCG	1 cut(s)	55
BslI	CCNNNNNNNGG	1 cut(s)	56
BsnI	GGCC	1 cut(s)	244
Bsp143I	GATC	3 cut(s)	52, 81, 268
BspACI	CCGC	2 cut(s)	5, 92
BspANI	GGCC	1 cut(s)	244
BspFNI	CGCG	1 cut(s)	92
BspLI	GGNNCC	1 cut(s)	22
BspTI	CTTAAG	1 cut(s)	302
BsrI	ACTGG	1 cut(s)	137
BssMI	GATC	3 cut(s)	52, 81, 268
BssSI	CACGAG	1 cut(s)	429
Bst2BI	CACGAG	1 cut(s)	429
Bst2UI	CCWGG	1 cut(s)	25
Bst4CI	ACNGT	1 cut(s)	145
BstAFI	CTTAAG	1 cut(s)	302
BstAPI	GCANNNNNTGC	1 cut(s)	113
BstC8I	GCNNGC	2 cut(s)	230, 444
BstF5I	GGATG	3 cut(s)	46, 107, 285
BstFNI	CGCG	1 cut(s)	92
BstKTI	GATC	3 cut(s)	55, 84, 271
BstMBI	GATC	3 cut(s)	52, 81, 268
BstMCI	CGRYCG	1 cut(s)	55
BstMWI	GCNNNNNNNGC	2 cut(s)	113, 197
BstNI	CCWGG	1 cut(s)	25
BstNSI	RCATGY	1 cut(s)	232
BstSCI	CCNGG	1 cut(s)	23
BstUI	CGCG	1 cut(s)	92
BsuRI	GGCC	1 cut(s)	244
BtsCI	GGATG	3 cut(s)	46, 107, 285
BtsI	GCAGTG	1 cut(s)	290
BtsIMutI	CAGTG	1 cut(s)	290
Cac8I	GCNNGC	2 cut(s)	230, 444
CaiI	CAGNNNCTG	1 cut(s)	143
CseI	GACGC	2 cut(s)	98, 434
CviAII	CATG	5 cut(s)	113, 188, 229, 238, 336
DpnI	GATC	3 cut(s)	54, 83, 270
DpnII	GATC	3 cut(s)	52, 81, 268
DrdI	GACNNNNNNGTC	1 cut(s)	95
DseDI	GACNNNNNNGTC	1 cut(s)	95
EaeI	YGGCCR	1 cut(s)	242
Eco57I	CTGAAG	1 cut(s)	317
EcoRII	CCWGG	1 cut(s)	23
FaeI	CATG	5 cut(s)	116, 191, 232, 241, 339
FatI	CATG	5 cut(s)	112, 187, 228, 237, 335
FblI	GTMKAC	1 cut(s)	87
Fnu4HI	GCNGC	1 cut(s)	93
FokI	GGATG	3 cut(s)	33, 94, 272
Fsp4HI	GCNGC	1 cut(s)	93
FspBI	CTAG	1 cut(s)	263
GluI	GCNGC	1 cut(s)	93
GsuI	CTGGAG	1 cut(s)	7
HaeIII	GGCC	1 cut(s)	244
HgaI	GACGC	2 cut(s)	98, 434
Hin1II	CATG	5 cut(s)	116, 191, 232, 241, 339
HincII	GTYRAC	3 cut(s)	88, 376, 466
HindII	GTYRAC	3 cut(s)	88, 376, 466
HindIII	AAGCTT	1 cut(s)	299
HinfI	GANTC	3 cut(s)	183, 367, 472
HpaI	GTTAAC	1 cut(s)	376
Hpy166II	GTNNAC	3 cut(s)	88, 376, 466
Hpy188III	TCNNGA	3 cut(s)	50, 351, 422
Hpy8I	GTNNAC	3 cut(s)	88, 376, 466
Hpy99I	CGWCG	2 cut(s)	89, 92
HpyAV	CCTTC	2 cut(s)	166, 301
HpyCH4III	ACNGT	1 cut(s)	145
HpyCH4IV	ACGT	2 cut(s)	33, 468
HpyCH4V	TGCA	4 cut(s)	38, 107, 200, 228
HpyF10VI	GCNNNNNNNGC	2 cut(s)	113, 197
HpySE526I	ACGT	2 cut(s)	33, 468
Hsp92II	CATG	5 cut(s)	116, 191, 232, 241, 339
KspAI	GTTAAC	1 cut(s)	376
Kzo9I	GATC	3 cut(s)	52, 81, 268
LmnI	GCTCC	3 cut(s)	26, 68, 331
LpnPI	CCDG	9 cut(s)	10, 37, 111, 150, 257, 336, 456, 471, 501
LweI	GCATC	4 cut(s)	69, 116, 401, 427
MaeI	CTAG	1 cut(s)	263
MaeII	ACGT	2 cut(s)	33, 468
MaeIII	GTNAC	1 cut(s)	139
MalI	GATC	3 cut(s)	54, 83, 270
MboI	GATC	3 cut(s)	52, 81, 268
MboII	GAAGA	2 cut(s)	22, 418
MlsI	TGGCCA	1 cut(s)	244
MluCI	AATT	7 cut(s)	39, 320, 341, 410, 493, 508, 523
MluNI	TGGCCA	1 cut(s)	244
MlyI	GAGTC	1 cut(s)	177
MnlI	CCTC	3 cut(s)	11, 425, 528
Mox20I	TGGCCA	1 cut(s)	244
MscI	TGGCCA	1 cut(s)	244
MseI	TTAA	4 cut(s)	303, 375, 414, 480
MslI	CAYNNNNRTG	1 cut(s)	205
Msp20I	TGGCCA	1 cut(s)	244
MspA1I	CMGCKG	2 cut(s)	446, 461
MspCI	CTTAAG	1 cut(s)	302
MspR9I	CCNGG	1 cut(s)	25
MvaI	CCWGG	1 cut(s)	25
MvnI	CGCG	1 cut(s)	92
MwoI	GCNNNNNNNGC	2 cut(s)	113, 197
NdeII	GATC	3 cut(s)	52, 81, 268
NlaIII	CATG	5 cut(s)	116, 191, 232, 241, 339
NlaIV	GGNNCC	1 cut(s)	22
NspI	RCATGY	1 cut(s)	232
PaeI	GCATGC	1 cut(s)	232
PcsI	WCGNNNNNNNCGW	1 cut(s)	96
PfeI	GAWTC	2 cut(s)	367, 472
PkrI	GCNGC	1 cut(s)	94
Ple19I	CGATCG	1 cut(s)	55
PleI	GAGTC	1 cut(s)	177
PpsI	GAGTC	1 cut(s)	177
Psp1406I	AACGTT	1 cut(s)	33
Psp6I	CCWGG	1 cut(s)	23
PspGI	CCWGG	1 cut(s)	23
PspN4I	GGNNCC	1 cut(s)	22
PstNI	CAGNNNCTG	1 cut(s)	143
PvuI	CGATCG	1 cut(s)	55
PvuII	CAGCTG	2 cut(s)	446, 461
RseI	CAYNNNNRTG	1 cut(s)	205
SalI	GTCGAC	1 cut(s)	86
SaqAI	TTAA	4 cut(s)	303, 375, 414, 480
SatI	GCNGC	1 cut(s)	93
Sau3AI	GATC	3 cut(s)	52, 81, 268
SchI	GAGTC	1 cut(s)	177
ScrFI	CCNGG	1 cut(s)	25
SetI	ASST	9 cut(s)	29, 36, 73, 276, 303, 448, 463, 471, 507
SfaNI	GCATC	4 cut(s)	69, 116, 401, 427
SgrDI	CGTCGACG	1 cut(s)	86
SmiMI	CAYNNNNRTG	1 cut(s)	205
SmlI	CTYRAG	1 cut(s)	302
SmoI	CTYRAG	1 cut(s)	302
SphI	GCATGC	1 cut(s)	232
Sse9I	AATT	7 cut(s)	39, 320, 341, 410, 493, 508, 523
SsiI	CCGC	2 cut(s)	5, 92
SspMI	CTAG	1 cut(s)	263
StyD4I	CCNGG	1 cut(s)	23
TaaI	ACNGT	1 cut(s)	145
TaiI	ACGT	2 cut(s)	36, 471
TaqI	TCGA	3 cut(s)	87, 99, 181
TasI	AATT	7 cut(s)	39, 320, 341, 410, 493, 508, 523
TauI	GCSGC	1 cut(s)	95
TfiI	GAWTC	2 cut(s)	367, 472
Tru1I	TTAA	4 cut(s)	303, 375, 414, 480
Tru9I	TTAA	4 cut(s)	303, 375, 414, 480
TscAI	CASTG	1 cut(s)	297
TspDTI	ATGAA	5 cut(s)	35, 226, 324, 498, 536
TspGWI	ACGGA	1 cut(s)	109
TspRI	CASTG	1 cut(s)	297
Vha464I	CTTAAG	1 cut(s)	302
XapI	RAATTY	3 cut(s)	320, 410, 508
XceI	RCATGY	1 cut(s)	232
XmiI	GTMKAC	1 cut(s)	87
XspI	CTAG	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.