Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0021923.1

Orthogroup ID

OG0004054

Physical Location & Seq

Genomic Coordinates Reverse (-)

12895 .. 14580

Gene Structure 1686 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0021923.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

atggcgaagagaggaggaagctcaacgttgaacgtcgctgttattcatcccgatctgggtataggaggagctgaaagactaattgtggatgcggctgttgagctcgcatcgcatggccataaagttcacgtctttacctcacaccatgataaaaatcgatgctttgaggagaccatctctggtgcctttcctgttactgtgtacggtgcttttctaccccgacatgtattctatcgtcttcatgctttgtgtgcatacctacggtgcctgtatgttgccctctgcgtgctagtcatgtggccgtcttttgatgtaatactagtagatcaggtttctgttgtcatcccattgctgaagcttaagaagtcggcaaaggtgttgttttattgtcattttccagatttgttgctcgctcaacacacaactattctgaggaggatatatagaaaacccatagacttcatagaagaaatgacaactggaatggcagataagattcttgttaacagcaaatttacagcacttacatttgcaaggacattcaagcatcttgatgcacaaggaattaagccagctgcatgcttatacatctgttggtgcaaagacattaattttatgttaaattttctctccatcaaccgttttgagaggaaaaagaatatagacttggcaatttcagcttttgccatgcttcgcacccttgaaggagatatgcttcaaggtcttaatctggctgaagcttccttgacaattgcaggcaagttcttacttattttctgtccgactagtcttactgacagagaccccatactaactagtagataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 map00510 map00513 map01100

Pfam Domains

Protein Families

Glyco_transf_4 Glycos_transf_1

Protein Analysis

274

Amino Acids

30.79

Weight (kDa)

9.04

Isoelectric Point (pI)

29.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004054)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78800
fragaria_vesca	FvH4_3g18220 FvH4_3g18220
malus_domestica	MD00G1077500.v1.1 MD00G1078000.v1.1 MD03G1178900.v1.1 MD11G1264500.v1.1
prunus_persica	Prupe.4G169100_v2.0.a1 Prupe.4G241400_v2.0.a1 Prupe.4G241400_v2.0.a1 Prupe.4G241400_v2.0.a1 Prupe.5G052700_v2.0.a1 Prupe.5G052700_v2.0.a1 Prupe.5G052700_v2.0.a1 Prupe.5G052700_v2.0.a1 Prupe.5G052700_v2.0.a1 Prupe.5G052700_v2.0.a1
pyrus_communis	pycom11g23280
rosa_chinensis	RchiOBHm_Chr5g0030771
rosa_laevigata	RLG00000033250
rosa_multiflora	Rmu_sc0009742.1_g000012 Rmu_sc0021923.1_g000002
rosa_roxburghii	Rroxscaffold_1G00049550
rosa_rugosa	Rorug05G0120600 Rorug05G0120700
rosa_samantha	Rh1AG151000 Rh1CG142200 Rh5AG212700 Rh5BG212000 Rh5CG235200 Rh5DG216800
rosa_wichuraiana	Rw1G012370 Rw5G019480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	182, 264
AciI	CCGC	1 cut(s)	92
AclI	AACGTT	1 cut(s)	26
AcoI	YGGCCR	2 cut(s)	115, 299
AcsI	RAATTY	2 cut(s)	512, 622
AcuI	CTGAAG	2 cut(s)	374, 756
AfaI	GTAC	1 cut(s)	203
AfiI	CCNNNNNNNGG	1 cut(s)	56
AflII	CTTAAG	1 cut(s)	359
AflIII	ACRYGT	1 cut(s)	223
AgsI	TTSAA	4 cut(s)	31, 544, 704, 719
AhlI	ACTAGT	3 cut(s)	319, 785, 815
AjiI	CACGTC	1 cut(s)	130
AjuI	GAANNNNNNNTTGG	2 cut(s)	650, 682
AluBI	AGCT	7 cut(s)	21, 71, 103, 358, 575, 680, 740
AluI	AGCT	7 cut(s)	21, 71, 103, 358, 575, 680, 740
Alw21I	GWGCWC	1 cut(s)	105
Alw26I	GTCTC	2 cut(s)	164, 795
AoxI	GGCC	2 cut(s)	115, 299
ApeKI	GCWGC	1 cut(s)	575
ApoI	RAATTY	2 cut(s)	512, 622
AseI	ATTAAT	1 cut(s)	609
BalI	TGGCCA	1 cut(s)	117
BanI	GGYRCC	2 cut(s)	182, 264
BanII	GRGCYC	1 cut(s)	105
BbsI	GAAGAC	1 cut(s)	230
Bbv12I	GWGCWC	1 cut(s)	105
BbvI	GCAGC	1 cut(s)	562
BccI	CCATC	2 cut(s)	182, 641
BceAI	ACGGC	1 cut(s)	286
BcoDI	GTCTC	2 cut(s)	164, 795
BcuI	ACTAGT	3 cut(s)	319, 785, 815
BfaI	CTAG	4 cut(s)	290, 320, 786, 816
BfrI	CTTAAG	1 cut(s)	359
BisI	GCNGC	2 cut(s)	93, 576
BlsI	GCNGC	2 cut(s)	94, 577
BmgBI	CACGTC	1 cut(s)	130
BmiI	GGNNCC	2 cut(s)	184, 266
BmsI	GCATC	5 cut(s)	79, 116, 149, 544, 556
BpiI	GAAGAC	1 cut(s)	230
BplI	GAGNNNNNCTC	2 cut(s)	161, 193
Bsa29I	ATCGAT	1 cut(s)	157
BsaBI	GATNNNNATC	1 cut(s)	153
BsaI	GGTCTC	2 cut(s)	164, 795
Bsc4I	CCNNNNNNNGG	1 cut(s)	56
Bse1I	ACTGG	1 cut(s)	484
Bse3DI	GCAATG	1 cut(s)	347
Bse8I	GATNNNNATC	1 cut(s)	153
BseCI	ATCGAT	1 cut(s)	157
BseGI	GGATG	3 cut(s)	46, 94, 342
BseJI	GATNNNNATC	1 cut(s)	153
BseLI	CCNNNNNNNGG	1 cut(s)	56
BseMI	GCAATG	1 cut(s)	347
BseMII	CTCAG	1 cut(s)	422
BseNI	ACTGG	1 cut(s)	484
BseRI	GAGGAG	4 cut(s)	27, 81, 182, 448
BseXI	GCAGC	1 cut(s)	562
BshFI	GGCC	2 cut(s)	117, 301
BshNI	GGYRCC	2 cut(s)	182, 264
BshVI	ATCGAT	1 cut(s)	157
BsiHKAI	GWGCWC	1 cut(s)	105
BslI	CCNNNNNNNGG	1 cut(s)	56
BsmAI	GTCTC	2 cut(s)	164, 795
BsnI	GGCC	2 cut(s)	117, 301
Bso31I	GGTCTC	2 cut(s)	164, 795
Bsp1286I	GDGCHC	1 cut(s)	105
Bsp143I	GATC	2 cut(s)	52, 325
BspACI	CCGC	1 cut(s)	92
BspANI	GGCC	2 cut(s)	117, 301
BspCNI	CTCAG	1 cut(s)	423
BspDI	ATCGAT	1 cut(s)	157
BspLI	GGNNCC	2 cut(s)	184, 266
BspT107I	GGYRCC	2 cut(s)	182, 264
BspTI	CTTAAG	1 cut(s)	359
BspTNI	GGTCTC	2 cut(s)	164, 795
BsrDI	GCAATG	1 cut(s)	347
BsrI	ACTGG	1 cut(s)	484
BssMI	GATC	2 cut(s)	52, 325
Bst4CI	ACNGT	4 cut(s)	199, 206, 264, 641
Bst6I	CTCTTC	1 cut(s)	2
BstAFI	CTTAAG	1 cut(s)	359
BstC8I	GCNNGC	6 cut(s)	105, 287, 411, 573, 580, 757
BstDEI	CTNAG	1 cut(s)	431
BstF5I	GGATG	3 cut(s)	46, 94, 342
BstKTI	GATC	2 cut(s)	55, 328
BstMAI	GTCTC	2 cut(s)	164, 795
BstMBI	GATC	2 cut(s)	52, 325
BstMWI	GCNNNNNNNGC	3 cut(s)	109, 251, 677
BstNSI	RCATGY	2 cut(s)	227, 582
BstV1I	GCAGC	1 cut(s)	562
BstV2I	GAAGAC	1 cut(s)	230
Bsu15I	ATCGAT	1 cut(s)	157
BsuRI	GGCC	2 cut(s)	117, 301
BsuTUI	ATCGAT	1 cut(s)	157
BtgZI	GCGATG	1 cut(s)	93
BtrI	CACGTC	1 cut(s)	130
BtsCI	GGATG	3 cut(s)	46, 94, 342
Cac8I	GCNNGC	6 cut(s)	105, 287, 411, 573, 580, 757
ClaI	ATCGAT	1 cut(s)	157
Csp6I	GTAC	1 cut(s)	202
CviAII	CATG	7 cut(s)	113, 146, 224, 242, 295, 579, 688
CviQI	GTAC	1 cut(s)	202
DdeI	CTNAG	1 cut(s)	431
DpnI	GATC	2 cut(s)	54, 327
DpnII	GATC	2 cut(s)	52, 325
EaeI	YGGCCR	2 cut(s)	115, 299
Eam1104I	CTCTTC	1 cut(s)	2
EarI	CTCTTC	1 cut(s)	2
Ecl136II	GAGCTC	1 cut(s)	103
Eco24I	GRGCYC	1 cut(s)	105
Eco31I	GGTCTC	2 cut(s)	164, 795
Eco53kI	GAGCTC	1 cut(s)	103
Eco57I	CTGAAG	2 cut(s)	374, 756
EcoICRI	GAGCTC	1 cut(s)	103
EcoT38I	GRGCYC	1 cut(s)	105
FaeI	CATG	7 cut(s)	116, 149, 227, 245, 298, 582, 691
FatI	CATG	7 cut(s)	112, 145, 223, 241, 294, 578, 687
Fnu4HI	GCNGC	2 cut(s)	93, 576
FokI	GGATG	3 cut(s)	33, 101, 329
FriOI	GRGCYC	1 cut(s)	105
Fsp4HI	GCNGC	2 cut(s)	93, 576
FspBI	CTAG	4 cut(s)	290, 320, 786, 816
GluI	GCNGC	2 cut(s)	93, 576
HaeIII	GGCC	2 cut(s)	117, 301
Hin1II	CATG	7 cut(s)	116, 149, 227, 245, 298, 582, 691
HincII	GTYRAC	1 cut(s)	505
HindII	GTYRAC	1 cut(s)	505
HindIII	AAGCTT	2 cut(s)	356, 738
HinfI	GANTC	1 cut(s)	496
HpaI	GTTAAC	1 cut(s)	505
Hpy166II	GTNNAC	3 cut(s)	127, 202, 505
Hpy188I	TCNGA	2 cut(s)	432, 783
Hpy188III	TCNNGA	3 cut(s)	50, 398, 551
Hpy8I	GTNNAC	3 cut(s)	127, 202, 505
Hpy99I	CGWCG	1 cut(s)	38
HpyAV	CCTTC	1 cut(s)	698
HpyCH4III	ACNGT	4 cut(s)	199, 206, 264, 641
HpyCH4IV	ACGT	3 cut(s)	26, 33, 129
HpyCH4V	TGCA	6 cut(s)	254, 533, 557, 578, 600, 755
HpyF10VI	GCNNNNNNNGC	3 cut(s)	109, 251, 677
HpyF3I	CTNAG	1 cut(s)	431
HpySE526I	ACGT	3 cut(s)	26, 33, 129
Hsp92II	CATG	7 cut(s)	116, 149, 227, 245, 298, 582, 691
KspAI	GTTAAC	1 cut(s)	505
Kzo9I	GATC	2 cut(s)	52, 325
LmnI	GCTCC	1 cut(s)	68
Lsp1109I	GCAGC	1 cut(s)	562
LweI	GCATC	5 cut(s)	79, 116, 149, 544, 556
MaeI	CTAG	4 cut(s)	290, 320, 786, 816
MaeII	ACGT	3 cut(s)	26, 33, 129
MaeIII	GTNAC	1 cut(s)	193
MalI	GATC	2 cut(s)	54, 327
MboI	GATC	2 cut(s)	52, 325
MboII	GAAGA	3 cut(s)	19, 230, 479
MfeI	CAATTG	1 cut(s)	750
MhlI	GDGCHC	1 cut(s)	105
MlsI	TGGCCA	1 cut(s)	117
MluCI	AATT	7 cut(s)	81, 512, 564, 610, 622, 672, 750
MluNI	TGGCCA	1 cut(s)	117
MmeI	TCCRAC	1 cut(s)	806
MnlI	CCTC	9 cut(s)	5, 8, 59, 148, 160, 290, 426, 429, 642
Mox20I	TGGCCA	1 cut(s)	117
MscI	TGGCCA	1 cut(s)	117
MseI	TTAA	6 cut(s)	360, 504, 567, 609, 620, 726
MslI	CAYNNNNRTG	1 cut(s)	552
Msp20I	TGGCCA	1 cut(s)	117
MspA1I	CMGCKG	1 cut(s)	575
MspCI	CTTAAG	1 cut(s)	359
MunI	CAATTG	1 cut(s)	750
MwoI	GCNNNNNNNGC	3 cut(s)	109, 251, 677
NdeII	GATC	2 cut(s)	52, 325
NlaIII	CATG	7 cut(s)	116, 149, 227, 245, 298, 582, 691
NlaIV	GGNNCC	2 cut(s)	184, 266
NspI	RCATGY	2 cut(s)	227, 582
PaeI	GCATGC	1 cut(s)	582
PciI	ACATGT	1 cut(s)	223
PfeI	GAWTC	1 cut(s)	496
PkrI	GCNGC	2 cut(s)	94, 577
PscI	ACATGT	1 cut(s)	223
PshBI	ATTAAT	1 cut(s)	609
Psp124BI	GAGCTC	1 cut(s)	105
Psp1406I	AACGTT	1 cut(s)	26
PspN4I	GGNNCC	2 cut(s)	184, 266
PvuII	CAGCTG	1 cut(s)	575
RsaI	GTAC	1 cut(s)	203
RsaNI	GTAC	1 cut(s)	202
RseI	CAYNNNNRTG	1 cut(s)	552
SacI	GAGCTC	1 cut(s)	105
SaqAI	TTAA	6 cut(s)	360, 504, 567, 609, 620, 726
SatI	GCNGC	2 cut(s)	93, 576
Sau3AI	GATC	2 cut(s)	52, 325
SduI	GDGCHC	1 cut(s)	105
SfaNI	GCATC	5 cut(s)	79, 116, 149, 544, 556
SmiMI	CAYNNNNRTG	1 cut(s)	552
SmlI	CTYRAG	1 cut(s)	359
SmoI	CTYRAG	1 cut(s)	359
SpeI	ACTAGT	3 cut(s)	319, 785, 815
SphI	GCATGC	1 cut(s)	582
Sse9I	AATT	7 cut(s)	81, 512, 564, 610, 622, 672, 750
SsiI	CCGC	1 cut(s)	92
SspMI	CTAG	4 cut(s)	290, 320, 786, 816
SstI	GAGCTC	1 cut(s)	105
TaaI	ACNGT	4 cut(s)	199, 206, 264, 641
TaiI	ACGT	3 cut(s)	29, 36, 132
TaqI	TCGA	1 cut(s)	157
TasI	AATT	7 cut(s)	81, 512, 564, 610, 622, 672, 750
TauI	GCSGC	1 cut(s)	95
TfiI	GAWTC	1 cut(s)	496
Tru1I	TTAA	6 cut(s)	360, 504, 567, 609, 620, 726
Tru9I	TTAA	6 cut(s)	360, 504, 567, 609, 620, 726
TseI	GCWGC	1 cut(s)	575
TspDTI	ATGAA	3 cut(s)	35, 230, 451
Vha464I	CTTAAG	1 cut(s)	359
VspI	ATTAAT	1 cut(s)	609
XapI	RAATTY	2 cut(s)	512, 622
XceI	RCATGY	2 cut(s)	227, 582
XspI	CTAG	4 cut(s)	290, 320, 786, 816

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.