Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0004054

Physical Location & Seq

Genomic Coordinates Forward (+)

30837315 .. 30839974

Gene Structure 2660 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG142200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGGCCATAAAGTTCACGTCTTTACCTCACACCATGATAAAAATCGATGCTTTGAGGAGACCATCTCTGGTGCCTTTCCTGTTACTGTGTACGGTGCTTTTCTACCCCGACATGTATTCTATCGTCTTCATGCTTTATCAGGTTTCTGTTGTCATCCCATTGCTGAAGCTTAAGAAGTCGGCAAAGGTGTTGTTTTATTGTCATTTTCCAGATTTGTTGCTCGCTCAACACACAACTATTCTGAGGAGGATATATAGAAAACCCATAGACTTCATAGAAGAAATGACATCTGGAATGGCAGATAAGATTCTTGTTAACAGCAAATTTACAGCACTTACATTTGCAAGGACATTCAAGCATCTTGATGCACAAGGAATTAAGCCAGCTGTTCTTCACCCAGCTGTCAATGTGAATCAATTCGATGAACCTAGCAATTCTCCTAAGTTAAATTTTCTCTCCATCAACCGAGATATGCTTCAAGGTCTTAATCTGGCTGAAGCTTCCTTGACAATTGCAGGTGGCTTTGACAATCGGTTGAGAGAAAAGGTTGAGTACTTGGAGGAGCTCAGAAGTTTAGCAGAAAGGGAAGGAGTGTCCAATCAGGTTAACTTCATCACATCTTGCTCAACAGCCGAAAGAAATGCACTACTCTCCCAGTGCCTATGTGTCGTTTATACACCAAAGGATGAACACTTTGGCATTGTTCCTCTGGAGGCAATGGCAGCTCATAAACCAGTTATTGCGTGCAACAGTGGGGGTCCTGTAGAGACAGTTAAGAATGGCGAAACGGGATTTCTTTGTGAAAGTAACCCAAGAGAGTTTTCCTTGGCTATGGCTAAACTCATTCAAGACCCACAGATGGCACAACGAATGGGTGTAGAAGCTCGGCGGCATGTTACAGAGTCATTCTCTACAAAAATATTCGGTCAGCATTTGAATCAATACCTAGTTGATGTTGCTCGGGCTAAAGAAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 map00510 map00513 map01100

Pfam Domains

Protein Families

Glyco_transf_4 Glycos_transf_1

Protein Analysis

325

Amino Acids

36.55

Weight (kDa)

8.4

Isoelectric Point (pI)

36.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glycos_transf_1	PF00534	165 - 297	2.3e-29	Glycosyl transferases group 1
Glyco_trans_1_4	PF13692	166 - 284	4.9e-18	Glycosyl transferases group 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004054)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78800
fragaria_vesca	FvH4_3g18220 FvH4_3g18220
malus_domestica	MD00G1077500.v1.1 MD00G1078000.v1.1 MD03G1178900.v1.1 MD11G1264500.v1.1
prunus_persica	Prupe.4G169100_v2.0.a1 Prupe.4G241400_v2.0.a1 Prupe.4G241400_v2.0.a1 Prupe.4G241400_v2.0.a1 Prupe.5G052700_v2.0.a1 Prupe.5G052700_v2.0.a1 Prupe.5G052700_v2.0.a1 Prupe.5G052700_v2.0.a1 Prupe.5G052700_v2.0.a1 Prupe.5G052700_v2.0.a1
pyrus_communis	pycom11g23280
rosa_chinensis	RchiOBHm_Chr5g0030771
rosa_laevigata	RLG00000033250
rosa_multiflora	Rmu_sc0009742.1_g000012 Rmu_sc0021923.1_g000002
rosa_roxburghii	Rroxscaffold_1G00049550
rosa_rugosa	Rorug05G0120600 Rorug05G0120700
rosa_samantha	Rh1AG151000 Rh1CG142200 Rh5AG212700 Rh5BG212000 Rh5CG235200 Rh5DG216800
rosa_wichuraiana	Rw1G012370 Rw5G019480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	506
Acc36I	ACCTGC	1 cut(s)	506
AccB1I	GGYRCC	1 cut(s)	70
AciI	CCGC	1 cut(s)	889
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	323, 448
AcuI	CTGAAG	2 cut(s)	185, 516
AfaI	GTAC	2 cut(s)	91, 554
AfiI	CCNNNNNNNGG	1 cut(s)	859
AflII	CTTAAG	1 cut(s)	170
AflIII	ACRYGT	1 cut(s)	111
AgsI	TTSAA	4 cut(s)	355, 479, 848, 937
AjiI	CACGTC	1 cut(s)	18
AjuI	GAANNNNNNNTTGG	2 cut(s)	805, 837
AluBI	AGCT	7 cut(s)	169, 386, 401, 500, 565, 725, 884
AluI	AGCT	7 cut(s)	169, 386, 401, 500, 565, 725, 884
Alw21I	GWGCWC	1 cut(s)	567
Alw26I	GTCTC	2 cut(s)	52, 761
Ama87I	CYCGRG	1 cut(s)	960
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	722
ApoI	RAATTY	2 cut(s)	323, 448
Asp700I	GAANNNNTTC	1 cut(s)	416
AspS9I	GGNCC	1 cut(s)	758
AsuHPI	GGTGA	1 cut(s)	386
AvaI	CYCGRG	1 cut(s)	960
AvaII	GGWCC	1 cut(s)	758
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	70
BanII	GRGCYC	1 cut(s)	567
BbsI	GAAGAC	1 cut(s)	118
Bbv12I	GWGCWC	1 cut(s)	567
BbvI	GCAGC	1 cut(s)	734
BccI	CCATC	3 cut(s)	70, 467, 853
BcgI	CGANNNNNNTGC	2 cut(s)	623, 657
BcoDI	GTCTC	2 cut(s)	52, 761
BfaI	CTAG	2 cut(s)	429, 947
BfmI	CTRYAG	1 cut(s)	762
BfrI	CTTAAG	1 cut(s)	170
BfuAI	ACCTGC	1 cut(s)	506
BisI	GCNGC	2 cut(s)	723, 890
BlsI	GCNGC	2 cut(s)	724, 891
BmcAI	AGTACT	1 cut(s)	554
Bme18I	GGWCC	1 cut(s)	758
BmeT110I	CYCGRG	1 cut(s)	960
BmgBI	CACGTC	1 cut(s)	18
BmgT120I	GGNCC	1 cut(s)	758
BmiI	GGNNCC	2 cut(s)	72, 759
BmrI	ACTGGG	1 cut(s)	649
BmsI	GCATC	3 cut(s)	37, 355, 367
BmuI	ACTGGG	1 cut(s)	649
BpiI	GAAGAC	1 cut(s)	118
BplI	GAGNNNNNCTC	4 cut(s)	49, 81, 893, 925
BpmI	CTGGAG	1 cut(s)	731
Bsa29I	ATCGAT	1 cut(s)	45
BsaBI	GATNNNNATC	1 cut(s)	41
BsaI	GGTCTC	1 cut(s)	52
BsaJI	CCNNGG	1 cut(s)	825
Bsc4I	CCNNNNNNNGG	1 cut(s)	859
Bse1I	ACTGG	2 cut(s)	655, 734
Bse3DI	GCAATG	2 cut(s)	158, 723
Bse8I	GATNNNNATC	1 cut(s)	41
BseCI	ATCGAT	1 cut(s)	45
BseDI	CCNNGG	1 cut(s)	825
BseGI	GGATG	2 cut(s)	153, 691
BseJI	GATNNNNATC	1 cut(s)	41
BseLI	CCNNNNNNNGG	1 cut(s)	859
BseMI	GCAATG	2 cut(s)	158, 723
BseMII	CTCAG	2 cut(s)	233, 580
BseNI	ACTGG	2 cut(s)	655, 734
BseRI	GAGGAG	3 cut(s)	70, 259, 575
BseXI	GCAGC	1 cut(s)	734
BseYI	CCCAGC	1 cut(s)	397
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	70
BshVI	ATCGAT	1 cut(s)	45
BsiHKAI	GWGCWC	1 cut(s)	567
BsiHKCI	CYCGRG	1 cut(s)	960
BslI	CCNNNNNNNGG	1 cut(s)	859
BsmAI	GTCTC	2 cut(s)	52, 761
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	52
BsoBI	CYCGRG	1 cut(s)	960
Bsp1286I	GDGCHC	1 cut(s)	567
BspACI	CCGC	1 cut(s)	889
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	2 cut(s)	234, 579
BspDI	ATCGAT	1 cut(s)	45
BspLI	GGNNCC	2 cut(s)	72, 759
BspMI	ACCTGC	1 cut(s)	506
BspT107I	GGYRCC	1 cut(s)	70
BspTI	CTTAAG	1 cut(s)	170
BspTNI	GGTCTC	1 cut(s)	52
BsrDI	GCAATG	2 cut(s)	158, 723
BsrI	ACTGG	2 cut(s)	655, 734
BssECI	CCNNGG	1 cut(s)	825
BssT1I	CCWWGG	1 cut(s)	825
Bst4CI	ACNGT	4 cut(s)	87, 94, 752, 772
BstAFI	CTTAAG	1 cut(s)	170
BstC8I	GCNNGC	3 cut(s)	222, 384, 745
BstDEI	CTNAG	3 cut(s)	242, 441, 566
BstF5I	GGATG	2 cut(s)	153, 691
BstMAI	GTCTC	2 cut(s)	52, 761
BstMWI	GCNNNNNNNGC	1 cut(s)	722
BstNSI	RCATGY	2 cut(s)	115, 896
BstSFI	CTRYAG	1 cut(s)	762
BstV1I	GCAGC	1 cut(s)	734
BstV2I	GAAGAC	1 cut(s)	118
Bsu15I	ATCGAT	1 cut(s)	45
BsuRI	GGCC	1 cut(s)	5
BsuTUI	ATCGAT	1 cut(s)	45
BtrI	CACGTC	1 cut(s)	18
BtsCI	GGATG	2 cut(s)	153, 691
BtsIMutI	CAGTG	2 cut(s)	662, 757
BveI	ACCTGC	1 cut(s)	506
Cac8I	GCNNGC	3 cut(s)	222, 384, 745
Cfr13I	GGNCC	1 cut(s)	758
ClaI	ATCGAT	1 cut(s)	45
Csp6I	GTAC	2 cut(s)	90, 553
CviAII	CATG	4 cut(s)	34, 112, 130, 893
CviQI	GTAC	2 cut(s)	90, 553
DdeI	CTNAG	3 cut(s)	242, 441, 566
EaeI	YGGCCR	1 cut(s)	3
Ecl136II	GAGCTC	1 cut(s)	565
Eco130I	CCWWGG	1 cut(s)	825
Eco24I	GRGCYC	1 cut(s)	567
Eco31I	GGTCTC	1 cut(s)	52
Eco47I	GGWCC	1 cut(s)	758
Eco53kI	GAGCTC	1 cut(s)	565
Eco57I	CTGAAG	2 cut(s)	185, 516
Eco88I	CYCGRG	1 cut(s)	960
EcoICRI	GAGCTC	1 cut(s)	565
EcoO109I	RGGNCCY	1 cut(s)	758
EcoT14I	CCWWGG	1 cut(s)	825
EcoT38I	GRGCYC	1 cut(s)	567
ErhI	CCWWGG	1 cut(s)	825
FaeI	CATG	4 cut(s)	37, 115, 133, 896
FatI	CATG	4 cut(s)	33, 111, 129, 892
Fnu4HI	GCNGC	2 cut(s)	723, 890
FokI	GGATG	2 cut(s)	140, 698
FriOI	GRGCYC	1 cut(s)	567
Fsp4HI	GCNGC	2 cut(s)	723, 890
FspBI	CTAG	2 cut(s)	429, 947
GluI	GCNGC	2 cut(s)	723, 890
GsaI	CCCAGC	1 cut(s)	401
GsuI	CTGGAG	1 cut(s)	731
HaeIII	GGCC	1 cut(s)	5
Hin1II	CATG	4 cut(s)	37, 115, 133, 896
HincII	GTYRAC	2 cut(s)	316, 607
HindII	GTYRAC	2 cut(s)	316, 607
HindIII	AAGCTT	2 cut(s)	167, 498
HinfI	GANTC	4 cut(s)	307, 412, 902, 937
HpaI	GTTAAC	2 cut(s)	316, 607
HphI	GGTGA	1 cut(s)	386
Hpy166II	GTNNAC	4 cut(s)	15, 90, 316, 607
Hpy188I	TCNGA	2 cut(s)	243, 569
Hpy188III	TCNNGA	5 cut(s)	209, 291, 362, 710, 848
Hpy8I	GTNNAC	4 cut(s)	15, 90, 316, 607
HpyAV	CCTTC	1 cut(s)	581
HpyCH4III	ACNGT	4 cut(s)	87, 94, 752, 772
HpyCH4IV	ACGT	1 cut(s)	17
HpyCH4V	TGCA	5 cut(s)	344, 368, 515, 644, 747
HpyF10VI	GCNNNNNNNGC	1 cut(s)	722
HpyF3I	CTNAG	3 cut(s)	242, 441, 566
HpySE526I	ACGT	1 cut(s)	17
Hsp92II	CATG	4 cut(s)	37, 115, 133, 896
KspAI	GTTAAC	2 cut(s)	316, 607
LmnI	GCTCC	1 cut(s)	562
Lsp1109I	GCAGC	1 cut(s)	734
LweI	GCATC	3 cut(s)	37, 355, 367
MaeI	CTAG	2 cut(s)	429, 947
MaeII	ACGT	1 cut(s)	17
MaeIII	GTNAC	3 cut(s)	81, 806, 895
MboII	GAAGA	3 cut(s)	118, 290, 383
MfeI	CAATTG	1 cut(s)	510
MhlI	GDGCHC	1 cut(s)	567
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	6 cut(s)	323, 375, 416, 433, 448, 510
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	911
MnlI	CCTC	7 cut(s)	36, 48, 237, 240, 553, 706, 717
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	416
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	7 cut(s)	171, 315, 378, 446, 486, 606, 774
MslI	CAYNNNNRTG	1 cut(s)	363
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	386, 401
MspCI	CTTAAG	1 cut(s)	170
MunI	CAATTG	1 cut(s)	510
MwoI	GCNNNNNNNGC	1 cut(s)	722
NlaIII	CATG	4 cut(s)	37, 115, 133, 896
NlaIV	GGNNCC	2 cut(s)	72, 759
NmeAIII	GCCGAG	1 cut(s)	865
NspI	RCATGY	2 cut(s)	115, 896
PaqCI	CACCTGC	1 cut(s)	506
PciI	ACATGT	1 cut(s)	111
PdmI	GAANNNNTTC	1 cut(s)	416
PfeI	GAWTC	3 cut(s)	307, 412, 937
PkrI	GCNGC	2 cut(s)	724, 891
PleI	GAGTC	1 cut(s)	910
PpsI	GAGTC	1 cut(s)	910
PpuMI	RGGWCCY	1 cut(s)	758
PscI	ACATGT	1 cut(s)	111
Psp124BI	GAGCTC	1 cut(s)	567
Psp5II	RGGWCCY	1 cut(s)	758
PspFI	CCCAGC	1 cut(s)	397
PspN4I	GGNNCC	2 cut(s)	72, 759
PspPI	GGNCC	1 cut(s)	758
PspPPI	RGGWCCY	1 cut(s)	758
PvuII	CAGCTG	2 cut(s)	386, 401
RsaI	GTAC	2 cut(s)	91, 554
RsaNI	GTAC	2 cut(s)	90, 553
RseI	CAYNNNNRTG	1 cut(s)	363
SacI	GAGCTC	1 cut(s)	567
SaqAI	TTAA	7 cut(s)	171, 315, 378, 446, 486, 606, 774
SatI	GCNGC	2 cut(s)	723, 890
Sau96I	GGNCC	1 cut(s)	758
ScaI	AGTACT	1 cut(s)	554
SchI	GAGTC	1 cut(s)	911
SduI	GDGCHC	1 cut(s)	567
SfaNI	GCATC	3 cut(s)	37, 355, 367
SfcI	CTRYAG	1 cut(s)	762
SinI	GGWCC	1 cut(s)	758
SmiMI	CAYNNNNRTG	1 cut(s)	363
SmlI	CTYRAG	1 cut(s)	170
SmoI	CTYRAG	1 cut(s)	170
Sse9I	AATT	6 cut(s)	323, 375, 416, 433, 448, 510
SsiI	CCGC	1 cut(s)	889
SspI	AATATT	1 cut(s)	921
SspMI	CTAG	2 cut(s)	429, 947
SstI	GAGCTC	1 cut(s)	567
StyI	CCWWGG	1 cut(s)	825
TaaI	ACNGT	4 cut(s)	87, 94, 752, 772
TaiI	ACGT	1 cut(s)	20
TaqI	TCGA	2 cut(s)	45, 420
TaqII	GACCGA	1 cut(s)	914
TasI	AATT	6 cut(s)	323, 375, 416, 433, 448, 510
TatI	WGTACW	1 cut(s)	552
TauI	GCSGC	1 cut(s)	892
TfiI	GAWTC	3 cut(s)	307, 412, 937
Tru1I	TTAA	7 cut(s)	171, 315, 378, 446, 486, 606, 774
Tru9I	TTAA	7 cut(s)	171, 315, 378, 446, 486, 606, 774
TscAI	CASTG	2 cut(s)	662, 757
TseI	GCWGC	1 cut(s)	722
TspDTI	ATGAA	5 cut(s)	118, 262, 438, 601, 702
TspRI	CASTG	2 cut(s)	662, 757
Vha464I	CTTAAG	1 cut(s)	170
VpaK11BI	GGWCC	1 cut(s)	758
XapI	RAATTY	2 cut(s)	323, 448
XceI	RCATGY	2 cut(s)	115, 896
XmnI	GAANNNNTTC	1 cut(s)	416
XspI	CTAG	2 cut(s)	429, 947
ZrmI	AGTACT	1 cut(s)	554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.