MD11G1264500.v1.1

Alpha-1,3 1,6-mannosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0004054
Physical Location & Seq
Forward (+)
37955488 .. 37959471
3984 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1264500.v1.1.491

Sequence Viewer

Length: 1233 bp
ATGGCGGAGAAGAAAGGAGGCTCCAAGTTGAACGTTGCAATCATCCATCCCGATCTGGGCATCGGTGGAGCTGAAAGACTGATCGTCGACGCGGCTGTCGAACTTGCATCACATGGCCACAAAGTTCACGTTTTCACTTCCCACCACGATAAAAATCGATGCTTTGAGGAGACCGTTTCTGGTATCTTTCCTGTTACTGTATATGGATCTTTCCTGCCCCGACATATATTCTATCGACTCCATGCTTTGTGTGCATATATACGGTGCCTTTTTGTTGCTCTCTGCATGCTGGTCATGTGGCCATCGTTTGATGTAATACTAGCAGATCAGGTTTCTGTTGTCATCCCACTACTGAAGCTTAAGAAGGCAACAAAGGTTTTGTTTTACTGTCATTTTCCAGATTTATTGTTGGCTCAACACACAACTCTTTTGAGGAGGATATATAGAAAACCCATAGACTTCATTGAAGAAATGACAACTGGGATGGCACATAAGATTCTTGTTAACAGCAAATTTACAGCATCTATGTTTGCAAAGACATTTAAGCATCTTGCCGCACGAGGGATTCAGCCAGCTGTTCTTTATCCAGCTGTCAATGTGAATCAGTTTAATGAACCCGCCAATTCTTACAGGCTAAATTTTCTGTCTATCAATCGTTTTGAGAGGAAAAAGAATATAGACTTGGCAATTTCAGCTTTTGCTTTGCTCCGTACCCTTGAAGGGGATGTCCTTCAAGGTCCTGATCTGGCTGAAGCTTCCTTGACAATTGCAGGTGGCTTTGATAATCGTCTGAGAGAAAATGTTGAGTACTTAGAGGAGCTCAGAAGCCTAGCAGAAAGGGAAGGAGTGTCCAGTCAAGTTAACTTCATCACCTCTTGCTCGACAGCAGAAAGAAATGCACTTCTCTCCCAATGCCTATGCGTCCTTTATACGCCAAAGGATGAACACTTTGGCATTGTACCTCTGGAGGCAATGGCTGCTCATAAACCTGTTATTGCGTGCAACAGTGGGGGCCCTGTAGAGACAGTTAAGAATGGTGAAACGGGATTTCTGTGCGACTGTAACCCAAGAGAGTTCTCCTTGGCTATGGCTAAACTCATAAAAGACCCGCAGATGGCTCAGAGAATGGGTATAGAAGCACGACGGCACGTCACAGAGTCATTCTCTACGAAAATATTTGGTCAGCACTTGAATCAATACATTGCTGATGTTGCTCGGACGAAAAGGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00510 ko00513 ko01100 map00510 map00513 map01100
Pfam Domains
Protein Families
Glyco_transf_4 Glycos_transf_1

Protein Analysis

411

Amino Acids

45.84

Weight (kDa)

8.68

Isoelectric Point (pI)

33.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_4 PF13439 21 - 180 3.8e-13 Glycosyltransferase Family 4
Glyco_trans_4_4 PF13579 22 - 175 8.4e-06 Glycosyl transferase 4-like domain
GT4-conflict PF20706 183 - 343 1e-08 Family 4 Glycosyltransferase in conflict systems
Glycos_transf_1 PF00534 207 - 382 2.2e-35 Glycosyl transferases group 1
Glyco_trans_1_4 PF13692 214 - 369 1.5e-19 Glycosyl transferases group 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 761
AasI GACNNNNNNGTC 1 cut(s) 95
Acc36I ACCTGC 1 cut(s) 761
AccB1I GGYRCC 1 cut(s) 264
AccI GTMKAC 1 cut(s) 87
AccII CGCG 1 cut(s) 92
AciI CCGC 5 cut(s) 5, 92, 555, 618, 1109
AclI AACGTT 1 cut(s) 33
AclWI GGATC 1 cut(s) 214
AcoI YGGCCR 2 cut(s) 115, 299
AcsI RAATTY 2 cut(s) 512, 637
AcuI CTGAAG 2 cut(s) 374, 771
AfaI GTAC 3 cut(s) 712, 809, 960
AfiI CCNNNNNNNGG 5 cut(s) 56, 561, 720, 721, 1114
AflII CTTAAG 1 cut(s) 359
AgsI TTSAA 5 cut(s) 31, 467, 719, 734, 1192
AhdI GACNNNNNGTC 2 cut(s) 83, 1148
AjiI CACGTC 1 cut(s) 1150
AjuI GAANNNNNNNTTGG 2 cut(s) 665, 697
AluBI AGCT 7 cut(s) 71, 358, 575, 590, 695, 755, 820
AluI AGCT 7 cut(s) 71, 358, 575, 590, 695, 755, 820
Alw21I GWGCWC 1 cut(s) 822
Alw26I GTCTC 2 cut(s) 164, 1016
AlwI GGATC 1 cut(s) 214
AoxI GGCC 3 cut(s) 115, 299, 1012
ApaI GGGCCC 1 cut(s) 1016
ApeKI GCWGC 1 cut(s) 977
ApoI RAATTY 2 cut(s) 512, 637
AspS9I GGNCC 3 cut(s) 737, 1012, 1013
AsuHPI GGTGA 2 cut(s) 862, 1049
AvaII GGWCC 1 cut(s) 737
BaeGI GKGCMC 1 cut(s) 1016
BalI TGGCCA 2 cut(s) 117, 301
BanI GGYRCC 1 cut(s) 264
BanII GRGCYC 2 cut(s) 822, 1016
BauI CACGAG 1 cut(s) 558
Bbv12I GWGCWC 1 cut(s) 822
BbvI GCAGC 1 cut(s) 964
BccI CCATC 4 cut(s) 54, 310, 478, 1108
BceAI ACGGC 1 cut(s) 1160
BcoDI GTCTC 2 cut(s) 164, 1016
BfaI CTAG 2 cut(s) 320, 830
BfmI CTRYAG 1 cut(s) 1017
BfrI CTTAAG 1 cut(s) 359
BfuAI ACCTGC 1 cut(s) 761
BisI GCNGC 3 cut(s) 93, 555, 978
BlsI GCNGC 3 cut(s) 94, 556, 979
BmcAI AGTACT 1 cut(s) 809
Bme18I GGWCC 1 cut(s) 737
BmeRI GACNNNNNGTC 2 cut(s) 83, 1148
BmgBI CACGTC 1 cut(s) 1150
BmgT120I GGNCC 3 cut(s) 737, 1012, 1013
BmiI GGNNCC 4 cut(s) 22, 266, 1013, 1014
BmrI ACTGGG 1 cut(s) 489
BmsI GCATC 5 cut(s) 69, 116, 149, 530, 556
BmuI ACTGGG 1 cut(s) 489
BplI GAGNNNNNCTC 2 cut(s) 1148, 1180
BpmI CTGGAG 1 cut(s) 986
Bsa29I ATCGAT 1 cut(s) 157
BsaBI GATNNNNATC 1 cut(s) 153
BsaI GGTCTC 1 cut(s) 164
BsaJI CCNNGG 1 cut(s) 1080
Bsc4I CCNNNNNNNGG 5 cut(s) 56, 561, 720, 721, 1114
Bse1I ACTGG 2 cut(s) 484, 852
Bse3DI GCAATG 2 cut(s) 978, 1200
Bse8I GATNNNNATC 1 cut(s) 153
BseCI ATCGAT 1 cut(s) 157
BseDI CCNNGG 1 cut(s) 1080
BseGI GGATG 6 cut(s) 42, 46, 342, 489, 730, 946
BseJI GATNNNNATC 1 cut(s) 153
BseLI CCNNNNNNNGG 5 cut(s) 56, 561, 720, 721, 1114
BseMI GCAATG 2 cut(s) 978, 1200
BseMII CTCAG 3 cut(s) 782, 835, 1133
BseNI ACTGG 2 cut(s) 484, 852
BseRI GAGGAG 3 cut(s) 182, 448, 830
BseSI GKGCMC 1 cut(s) 1016
BseXI GCAGC 1 cut(s) 964
Bsh1236I CGCG 1 cut(s) 92
BshFI GGCC 3 cut(s) 117, 301, 1014
BshNI GGYRCC 1 cut(s) 264
BshVI ATCGAT 1 cut(s) 157
BsiHKAI GWGCWC 1 cut(s) 822
BslI CCNNNNNNNGG 5 cut(s) 56, 561, 720, 721, 1114
BsmAI GTCTC 2 cut(s) 164, 1016
BsnI GGCC 3 cut(s) 117, 301, 1014
Bso31I GGTCTC 1 cut(s) 164
Bsp120I GGGCCC 1 cut(s) 1012
Bsp1286I GDGCHC 2 cut(s) 822, 1016
Bsp143I GATC 5 cut(s) 52, 81, 206, 325, 742
BspACI CCGC 5 cut(s) 5, 92, 555, 618, 1109
BspANI GGCC 3 cut(s) 117, 301, 1014
BspCNI CTCAG 3 cut(s) 783, 834, 1132
BspDI ATCGAT 1 cut(s) 157
BspFNI CGCG 1 cut(s) 92
BspLI GGNNCC 4 cut(s) 22, 266, 1013, 1014
BspMI ACCTGC 1 cut(s) 761
BspPI GGATC 1 cut(s) 214
BspT107I GGYRCC 1 cut(s) 264
BspTI CTTAAG 1 cut(s) 359
BspTNI GGTCTC 1 cut(s) 164
BsrDI GCAATG 2 cut(s) 978, 1200
BsrI ACTGG 2 cut(s) 484, 852
BssECI CCNNGG 1 cut(s) 1080
BssMI GATC 5 cut(s) 52, 81, 206, 325, 742
BssSI CACGAG 1 cut(s) 558
BssT1I CCWWGG 1 cut(s) 1080
Bst2BI CACGAG 1 cut(s) 558
Bst4CI ACNGT 7 cut(s) 175, 199, 264, 389, 1007, 1027, 1061
BstAFI CTTAAG 1 cut(s) 359
BstAPI GCANNNNNTGC 1 cut(s) 977
BstC8I GCNNGC 3 cut(s) 287, 573, 1000
BstDEI CTNAG 4 cut(s) 791, 811, 821, 1119
BstF5I GGATG 6 cut(s) 42, 46, 342, 489, 730, 946
BstFNI CGCG 1 cut(s) 92
BstKTI GATC 5 cut(s) 55, 84, 209, 328, 745
BstMAI GTCTC 2 cut(s) 164, 1016
BstMBI GATC 5 cut(s) 52, 81, 206, 325, 742
BstMWI GCNNNNNNNGC 4 cut(s) 251, 692, 977, 1211
BstNSI RCATGY 1 cut(s) 289
BstSFI CTRYAG 1 cut(s) 1017
BstSLI GKGCMC 1 cut(s) 1016
BstUI CGCG 1 cut(s) 92
BstV1I GCAGC 1 cut(s) 964
BstX2I RGATCY 1 cut(s) 206
BstYI RGATCY 1 cut(s) 206
Bsu15I ATCGAT 1 cut(s) 157
BsuRI GGCC 3 cut(s) 117, 301, 1014
BsuTUI ATCGAT 1 cut(s) 157
BtrI CACGTC 1 cut(s) 1150
BtsCI GGATG 6 cut(s) 42, 46, 342, 489, 730, 946
BtsIMutI CAGTG 1 cut(s) 1012
BveI ACCTGC 1 cut(s) 761
Cac8I GCNNGC 3 cut(s) 287, 573, 1000
Cfr13I GGNCC 3 cut(s) 737, 1012, 1013
ClaI ATCGAT 1 cut(s) 157
CseI GACGC 2 cut(s) 98, 910
Csp6I GTAC 3 cut(s) 711, 808, 959
CviAII CATG 4 cut(s) 113, 242, 286, 295
CviQI GTAC 3 cut(s) 711, 808, 959
DdeI CTNAG 4 cut(s) 791, 811, 821, 1119
DpnI GATC 5 cut(s) 54, 83, 208, 327, 744
DpnII GATC 5 cut(s) 52, 81, 206, 325, 742
DrdI GACNNNNNNGTC 1 cut(s) 95
DriI GACNNNNNGTC 2 cut(s) 83, 1148
DseDI GACNNNNNNGTC 1 cut(s) 95
EaeI YGGCCR 2 cut(s) 115, 299
Eam1105I GACNNNNNGTC 2 cut(s) 83, 1148
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 1 cut(s) 820
Eco130I CCWWGG 1 cut(s) 1080
Eco24I GRGCYC 2 cut(s) 822, 1016
Eco31I GGTCTC 1 cut(s) 164
Eco47I GGWCC 1 cut(s) 737
Eco53kI GAGCTC 1 cut(s) 820
Eco57I CTGAAG 2 cut(s) 374, 771
EcoICRI GAGCTC 1 cut(s) 820
EcoO109I RGGNCCY 3 cut(s) 737, 1012, 1013
EcoT14I CCWWGG 1 cut(s) 1080
EcoT38I GRGCYC 2 cut(s) 822, 1016
ErhI CCWWGG 1 cut(s) 1080
FaeI CATG 4 cut(s) 116, 245, 289, 298
FatI CATG 4 cut(s) 112, 241, 285, 294
FauI CCCGC 2 cut(s) 625, 1116
FblI GTMKAC 1 cut(s) 87
Fnu4HI GCNGC 3 cut(s) 93, 555, 978
FokI GGATG 6 cut(s) 29, 33, 329, 496, 737, 953
FriOI GRGCYC 2 cut(s) 822, 1016
Fsp4HI GCNGC 3 cut(s) 93, 555, 978
FspBI CTAG 2 cut(s) 320, 830
GluI GCNGC 3 cut(s) 93, 555, 978
GsuI CTGGAG 1 cut(s) 986
HaeIII GGCC 3 cut(s) 117, 301, 1014
HgaI GACGC 2 cut(s) 98, 910
Hin1II CATG 4 cut(s) 116, 245, 289, 298
HincII GTYRAC 3 cut(s) 88, 505, 862
HindII GTYRAC 3 cut(s) 88, 505, 862
HindIII AAGCTT 2 cut(s) 356, 753
HinfI GANTC 6 cut(s) 237, 496, 565, 601, 1157, 1192
HpaI GTTAAC 2 cut(s) 505, 862
HphI GGTGA 2 cut(s) 862, 1049
Hpy166II GTNNAC 4 cut(s) 88, 127, 505, 862
Hpy188I TCNGA 4 cut(s) 792, 824, 1122, 1218
Hpy188III TCNNGA 4 cut(s) 50, 398, 740, 965
Hpy8I GTNNAC 4 cut(s) 88, 127, 505, 862
Hpy99I CGWCG 3 cut(s) 89, 92, 1146
HpyAV CCTTC 4 cut(s) 358, 713, 740, 836
HpyCH4III ACNGT 7 cut(s) 175, 199, 264, 389, 1007, 1027, 1061
HpyCH4IV ACGT 3 cut(s) 33, 129, 1149
HpyCH4V TGCA 8 cut(s) 38, 107, 254, 285, 533, 770, 899, 1002
HpyF10VI GCNNNNNNNGC 4 cut(s) 251, 692, 977, 1211
HpyF3I CTNAG 4 cut(s) 791, 811, 821, 1119
HpySE526I ACGT 3 cut(s) 33, 129, 1149
Hsp92II CATG 4 cut(s) 116, 245, 289, 298
KspAI GTTAAC 2 cut(s) 505, 862
Kzo9I GATC 5 cut(s) 52, 81, 206, 325, 742
LmnI GCTCC 4 cut(s) 26, 68, 711, 817
Lsp1109I GCAGC 1 cut(s) 964
LweI GCATC 5 cut(s) 69, 116, 149, 530, 556
MaeI CTAG 2 cut(s) 320, 830
MaeII ACGT 3 cut(s) 33, 129, 1149
MaeIII GTNAC 3 cut(s) 193, 1061, 1150
MalI GATC 5 cut(s) 54, 83, 208, 327, 744
MboI GATC 5 cut(s) 52, 81, 206, 325, 742
MboII GAAGA 2 cut(s) 22, 479
MfeI CAATTG 1 cut(s) 765
MflI RGATCY 1 cut(s) 206
MhlI GDGCHC 2 cut(s) 822, 1016
MlsI TGGCCA 2 cut(s) 117, 301
MluCI AATT 5 cut(s) 512, 622, 637, 687, 765
MluNI TGGCCA 2 cut(s) 117, 301
MlyI GAGTC 2 cut(s) 231, 1166
Mox20I TGGCCA 2 cut(s) 117, 301
MscI TGGCCA 2 cut(s) 117, 301
MseI TTAA 6 cut(s) 360, 504, 543, 609, 861, 1029
Msp20I TGGCCA 2 cut(s) 117, 301
MspA1I CMGCKG 2 cut(s) 575, 590
MspCI CTTAAG 1 cut(s) 359
MunI CAATTG 1 cut(s) 765
MvnI CGCG 1 cut(s) 92
MwoI GCNNNNNNNGC 4 cut(s) 251, 692, 977, 1211
NdeII GATC 5 cut(s) 52, 81, 206, 325, 742
NlaIII CATG 4 cut(s) 116, 245, 289, 298
NlaIV GGNNCC 4 cut(s) 22, 266, 1013, 1014
NmuCI GTSAC 1 cut(s) 1150
NspI RCATGY 1 cut(s) 289
PaeI GCATGC 1 cut(s) 289
PaqCI CACCTGC 1 cut(s) 761
PcsI WCGNNNNNNNCGW 1 cut(s) 96
PfeI GAWTC 4 cut(s) 496, 565, 601, 1192
PkrI GCNGC 3 cut(s) 94, 556, 979
PleI GAGTC 2 cut(s) 231, 1165
PpsI GAGTC 2 cut(s) 231, 1165
PpuMI RGGWCCY 1 cut(s) 737
Psp124BI GAGCTC 1 cut(s) 822
Psp1406I AACGTT 1 cut(s) 33
Psp5II RGGWCCY 1 cut(s) 737
PspN4I GGNNCC 4 cut(s) 22, 266, 1013, 1014
PspOMI GGGCCC 1 cut(s) 1012
PspPI GGNCC 3 cut(s) 737, 1012, 1013
PspPPI RGGWCCY 1 cut(s) 737
PsuI RGATCY 1 cut(s) 206
PvuII CAGCTG 2 cut(s) 575, 590
RsaI GTAC 3 cut(s) 712, 809, 960
RsaNI GTAC 3 cut(s) 711, 808, 959
SacI GAGCTC 1 cut(s) 822
SalI GTCGAC 1 cut(s) 86
SaqAI TTAA 6 cut(s) 360, 504, 543, 609, 861, 1029
SatI GCNGC 3 cut(s) 93, 555, 978
Sau3AI GATC 5 cut(s) 52, 81, 206, 325, 742
Sau96I GGNCC 3 cut(s) 737, 1012, 1013
ScaI AGTACT 1 cut(s) 809
SchI GAGTC 2 cut(s) 231, 1166
SduI GDGCHC 2 cut(s) 822, 1016
SfaNI GCATC 5 cut(s) 69, 116, 149, 530, 556
SfcI CTRYAG 1 cut(s) 1017
SgrDI CGTCGACG 1 cut(s) 86
SinI GGWCC 1 cut(s) 737
SmlI CTYRAG 1 cut(s) 359
SmoI CTYRAG 1 cut(s) 359
SphI GCATGC 1 cut(s) 289
Sse9I AATT 5 cut(s) 512, 622, 637, 687, 765
SsiI CCGC 5 cut(s) 5, 92, 555, 618, 1109
SspI AATATT 1 cut(s) 1176
SspMI CTAG 2 cut(s) 320, 830
SstI GAGCTC 1 cut(s) 822
StyI CCWWGG 1 cut(s) 1080
TaaI ACNGT 7 cut(s) 175, 199, 264, 389, 1007, 1027, 1061
TaiI ACGT 3 cut(s) 36, 132, 1152
TaqI TCGA 5 cut(s) 87, 99, 157, 235, 881
TasI AATT 5 cut(s) 512, 622, 637, 687, 765
TatI WGTACW 1 cut(s) 807
TauI GCSGC 2 cut(s) 95, 557
TfiI GAWTC 4 cut(s) 496, 565, 601, 1192
Tru1I TTAA 6 cut(s) 360, 504, 543, 609, 861, 1029
Tru9I TTAA 6 cut(s) 360, 504, 543, 609, 861, 1029
TscAI CASTG 1 cut(s) 1012
TseFI GTSAC 1 cut(s) 1150
TseI GCWGC 1 cut(s) 977
Tsp45I GTSAC 1 cut(s) 1150
TspDTI ATGAA 4 cut(s) 451, 627, 856, 957
TspGWI ACGGA 1 cut(s) 698
TspRI CASTG 1 cut(s) 1012
Vha464I CTTAAG 1 cut(s) 359
VpaK11BI GGWCC 1 cut(s) 737
XapI RAATTY 2 cut(s) 512, 637
XceI RCATGY 1 cut(s) 289
XmiI GTMKAC 1 cut(s) 87
XspI CTAG 2 cut(s) 320, 830
ZrmI AGTACT 1 cut(s) 809
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.