Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0004054

Physical Location & Seq

Genomic Coordinates Reverse (-)

15471399 .. 15472196

Gene Structure 798 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1077500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGGGTATCTTTCCAGTTACTATATATGGTGCCTTCCTACCCCGACATATATTCTATCGACTCCATGCTTTGTGTGGATATATACGGTGCCTTTCTATTGCTCTCTGCAAGCTGTTCACGTGGCCATCGTTTGATGTAATACTAGCAGATCAGGTTTCTGTTGTCATCCCACTGCTGAGGCTTAAGAAGGCAACAAAGGTATTTGCACCTATTTCGTGTGAATTGTTATCTGGTAACTTCTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 map00510 map00513 map01100

Pfam Domains

Protein Families

Glyco_transf_4 Glycos_transf_1

Protein Analysis

82

Amino Acids

9.2

Weight (kDa)

9.34

Isoelectric Point (pI)

27.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004054)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78800
fragaria_vesca	FvH4_3g18220 FvH4_3g18220
malus_domestica	MD00G1077500.v1.1 MD00G1078000.v1.1 MD03G1178900.v1.1 MD11G1264500.v1.1
prunus_persica	Prupe.4G169100_v2.0.a1 Prupe.4G241400_v2.0.a1 Prupe.4G241400_v2.0.a1 Prupe.4G241400_v2.0.a1 Prupe.5G052700_v2.0.a1 Prupe.5G052700_v2.0.a1 Prupe.5G052700_v2.0.a1 Prupe.5G052700_v2.0.a1 Prupe.5G052700_v2.0.a1 Prupe.5G052700_v2.0.a1
pyrus_communis	pycom11g23280
rosa_chinensis	RchiOBHm_Chr5g0030771
rosa_laevigata	RLG00000033250
rosa_multiflora	Rmu_sc0009742.1_g000012 Rmu_sc0021923.1_g000002
rosa_roxburghii	Rroxscaffold_1G00049550
rosa_rugosa	Rorug05G0120600 Rorug05G0120700
rosa_samantha	Rh1AG151000 Rh1CG142200 Rh5AG212700 Rh5BG212000 Rh5CG235200 Rh5DG216800
rosa_wichuraiana	Rw1G012370 Rw5G019480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	29, 87
AcoI	YGGCCR	1 cut(s)	122
AcvI	CACGTG	1 cut(s)	120
AflII	CTTAAG	1 cut(s)	182
AluBI	AGCT	1 cut(s)	112
AluI	AGCT	1 cut(s)	112
AoxI	GGCC	1 cut(s)	122
BalI	TGGCCA	1 cut(s)	124
BanI	GGYRCC	2 cut(s)	29, 87
BbrPI	CACGTG	1 cut(s)	120
BbvCI	CCTCAGC	1 cut(s)	176
BccI	CCATC	1 cut(s)	133
BcgI	CGANNNNNNTGC	2 cut(s)	195, 229
BfaI	CTAG	1 cut(s)	143
BfrI	CTTAAG	1 cut(s)	182
BmiI	GGNNCC	2 cut(s)	31, 89
Bpu10I	CCTNAGC	1 cut(s)	176
BsaAI	YACGTR	1 cut(s)	120
Bse1I	ACTGG	1 cut(s)	14
BseGI	GGATG	1 cut(s)	165
BseMII	CTCAG	1 cut(s)	167
BseNI	ACTGG	1 cut(s)	14
BshFI	GGCC	1 cut(s)	124
BshNI	GGYRCC	2 cut(s)	29, 87
BsnI	GGCC	1 cut(s)	124
Bsp143I	GATC	1 cut(s)	148
BspANI	GGCC	1 cut(s)	124
BspCNI	CTCAG	1 cut(s)	168
BspLI	GGNNCC	2 cut(s)	31, 89
BspT107I	GGYRCC	2 cut(s)	29, 87
BspTI	CTTAAG	1 cut(s)	182
BsrI	ACTGG	1 cut(s)	14
BssMI	GATC	1 cut(s)	148
Bst4CI	ACNGT	1 cut(s)	87
BstAFI	CTTAAG	1 cut(s)	182
BstBAI	YACGTR	1 cut(s)	120
BstC8I	GCNNGC	1 cut(s)	110
BstDEI	CTNAG	1 cut(s)	176
BstF5I	GGATG	1 cut(s)	165
BstKTI	GATC	1 cut(s)	151
BstMBI	GATC	1 cut(s)	148
BsuRI	GGCC	1 cut(s)	124
BtsCI	GGATG	1 cut(s)	165
BtsI	GCAGTG	1 cut(s)	170
BtsIMutI	CAGTG	1 cut(s)	170
Cac8I	GCNNGC	1 cut(s)	110
CviAII	CATG	1 cut(s)	65
CviJI	RGCY	3 cut(s)	112, 124, 181
CviKI_1	RGCY	3 cut(s)	112, 124, 181
DdeI	CTNAG	1 cut(s)	176
DpnI	GATC	1 cut(s)	150
DpnII	GATC	1 cut(s)	148
EaeI	YGGCCR	1 cut(s)	122
Eco72I	CACGTG	1 cut(s)	120
FaeI	CATG	1 cut(s)	68
FaiI	YATR	8 cut(s)	23, 25, 27, 48, 50, 66, 81, 83
FatI	CATG	1 cut(s)	64
FokI	GGATG	1 cut(s)	152
FspBI	CTAG	1 cut(s)	143
HaeIII	GGCC	1 cut(s)	124
Hin1II	CATG	1 cut(s)	68
HinfI	GANTC	1 cut(s)	60
Hpy166II	GTNNAC	1 cut(s)	117
Hpy8I	GTNNAC	1 cut(s)	117
HpyAV	CCTTC	2 cut(s)	43, 181
HpyCH4III	ACNGT	1 cut(s)	87
HpyCH4IV	ACGT	1 cut(s)	119
HpyCH4V	TGCA	2 cut(s)	108, 206
HpyF3I	CTNAG	1 cut(s)	176
HpySE526I	ACGT	1 cut(s)	119
Hsp92II	CATG	1 cut(s)	68
Kzo9I	GATC	1 cut(s)	148
LpnPI	CCDG	4 cut(s)	27, 137, 216, 226
MaeI	CTAG	1 cut(s)	143
MaeII	ACGT	1 cut(s)	119
MaeIII	GTNAC	2 cut(s)	16, 233
MalI	GATC	1 cut(s)	150
MboI	GATC	1 cut(s)	148
MlsI	TGGCCA	1 cut(s)	124
MluCI	AATT	1 cut(s)	221
MluNI	TGGCCA	1 cut(s)	124
MlyI	GAGTC	1 cut(s)	54
MnlI	CCTC	1 cut(s)	171
Mox20I	TGGCCA	1 cut(s)	124
MscI	TGGCCA	1 cut(s)	124
MseI	TTAA	1 cut(s)	183
Msp20I	TGGCCA	1 cut(s)	124
MspCI	CTTAAG	1 cut(s)	182
NdeII	GATC	1 cut(s)	148
NlaIII	CATG	1 cut(s)	68
NlaIV	GGNNCC	2 cut(s)	31, 89
PcsI	WCGNNNNNNNCGW	1 cut(s)	125
PleI	GAGTC	1 cut(s)	54
PmaCI	CACGTG	1 cut(s)	120
PmlI	CACGTG	1 cut(s)	120
PpsI	GAGTC	1 cut(s)	54
Ppu21I	YACGTR	1 cut(s)	120
PspCI	CACGTG	1 cut(s)	120
PspN4I	GGNNCC	2 cut(s)	31, 89
SaqAI	TTAA	1 cut(s)	183
Sau3AI	GATC	1 cut(s)	148
SchI	GAGTC	1 cut(s)	54
SetI	ASST	5 cut(s)	114, 122, 156, 201, 211
SgeI	CNNG	9 cut(s)	26, 54, 77, 121, 130, 132, 155, 164, 228
SmlI	CTYRAG	1 cut(s)	182
SmoI	CTYRAG	1 cut(s)	182
Sse9I	AATT	1 cut(s)	221
SspMI	CTAG	1 cut(s)	143
TaaI	ACNGT	1 cut(s)	87
TaiI	ACGT	1 cut(s)	122
TaqI	TCGA	1 cut(s)	58
TasI	AATT	1 cut(s)	221
Tru1I	TTAA	1 cut(s)	183
Tru9I	TTAA	1 cut(s)	183
TscAI	CASTG	1 cut(s)	177
TspRI	CASTG	1 cut(s)	177
Vha464I	CTTAAG	1 cut(s)	182
XcmI	CCANNNNNNNNNTGG	1 cut(s)	71
XspI	CTAG	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.