Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0004054

Physical Location & Seq

Genomic Coordinates Reverse (-)

5675941 .. 5682027

Gene Structure 6087 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G052700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

ATGGCAAAGAAAGGAAGCTCAAAGTTGAATATTGCCATTATTCATCCTGATCTGGGTATAGGTGGAGCTGAAAGACTAGTTGTTGATGCGGCTGTGGAACTTGCATCCCATGGGCATAAAGTTCATGTTTTCACAGCGCACCATGACAAAAATCGCTGTTTTGAGGAGACTATTTCTGGTACCTTTCCTGTGACTGTATATGGCGCTTTCCTACCCCGACATATATTCTATCATCTTCATGCTTTGTGTGCATATCTGCGGTGCCTTTTTGTTGCTGTGTGTGTGCTGGTCATGTGGCCATCATTTGATGTGATACTAGCTGATCAGGTTTCTGTTGTCATCCCATTGCTGAAGCTAAAGAAGTCAACAAAGGTTCTTTTTTATTGCCATTTTCCAGATTTATTACTGGCTCAACATACAACTATTCTAAGGAGGATATATAGAAAACCGATAGACTTCATAGAAGAAATGACAACTGGAATTGCTGATAAGATTCTTGTTAATAGCAAATTTACGGCATCTATGTTTGCAAAGACCTTTAAGCGTCTTGATGCGCGAGGAGTTCAGCCAGCTGTTCTTTACCCAGCTGTCAATGTGAATCAGTTTGATGAACCCACCGATTCTTATAAGTTGAATTTTCTGTCCATCAACCGTTTTGAGAAGAAAAAGAATATAGACTTGGCAATTTTGGCCTTTTCTATGCTTCAGACCCTAGGAGGAGATGTGCTTCAAGGCCCCAATCTGGCTGAAGCTTCCTTAACAATTGCAGGTGGTTTTGATAAGCGCTTGAAGGAAAATGTTGAGTACTTGGAGGAGCTCAGAAGTTTAGCGAAAAGGGAAGGAGTGTCTAGTCAGGTTAACTTCATCACATCTTGCTCAACGGCTGAAAGAAATGCACTTCTCTCCCAATGCCTATGTGTTCTTTATACGCCAAAGGATGAACACTTTGGCATTGTTCCTCTGGAAGCGATGGCGGCTCACAAACCTGTTATTGCATGCAATAGTGGGGGCCCTGTAGAAACAGTTAAGGATGGTGTAACAGGATTTCTTTGTGAGGGTAACCCAAGAGAATTCTCCTTGGCTATGGCTAAACTCATTCAAGACCCACAGATGGCACAGAGAATGGGTACAGAAGCTCGAAAGCATGTCACGGAGTCATTCTCTACAAAAATATTTGGTCAGAATTTGAATCAATACCTTGTTGATATTGCTCGGACAAAGAGAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 map00510 map00513 map01100

Pfam Domains

Protein Families

Glyco_transf_4 Glycos_transf_1

Protein Analysis

410

Amino Acids

45.5

Weight (kDa)

8.69

Isoelectric Point (pI)

35.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004054)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78800
fragaria_vesca	FvH4_3g18220 FvH4_3g18220
malus_domestica	MD00G1077500.v1.1 MD00G1078000.v1.1 MD03G1178900.v1.1 MD11G1264500.v1.1
prunus_persica	Prupe.4G169100_v2.0.a1 Prupe.4G241400_v2.0.a1 Prupe.4G241400_v2.0.a1 Prupe.4G241400_v2.0.a1 Prupe.5G052700_v2.0.a1 Prupe.5G052700_v2.0.a1 Prupe.5G052700_v2.0.a1 Prupe.5G052700_v2.0.a1 Prupe.5G052700_v2.0.a1 Prupe.5G052700_v2.0.a1
pyrus_communis	pycom11g23280
rosa_chinensis	RchiOBHm_Chr5g0030771
rosa_laevigata	RLG00000033250
rosa_multiflora	Rmu_sc0009742.1_g000012 Rmu_sc0021923.1_g000002
rosa_roxburghii	Rroxscaffold_1G00049550
rosa_rugosa	Rorug05G0120600 Rorug05G0120700
rosa_samantha	Rh1AG151000 Rh1CG142200 Rh5AG212700 Rh5BG212000 Rh5CG235200 Rh5DG216800
rosa_wichuraiana	Rw1G012370 Rw5G019480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	627
AarI	CACCTGC	1 cut(s)	758
Acc36I	ACCTGC	1 cut(s)	758
Acc65I	GGTACC	1 cut(s)	179
AccB1I	GGYRCC	2 cut(s)	179, 261
AccII	CGCG	1 cut(s)	556
AciI	CCGC	3 cut(s)	89, 259, 974
AcoI	YGGCCR	1 cut(s)	296
AcsI	RAATTY	4 cut(s)	509, 634, 1070, 1183
AcuI	CTGAAG	3 cut(s)	371, 689, 768
AfaI	GTAC	3 cut(s)	181, 806, 1129
AfeI	AGCGCT	1 cut(s)	785
AfiI	CCNNNNNNNGG	3 cut(s)	53, 742, 1111
AgsI	TTSAA	6 cut(s)	28, 634, 731, 790, 1100, 1189
AhlI	ACTAGT	1 cut(s)	76
AjuI	GAANNNNNNNTTGG	2 cut(s)	662, 694
AluBI	AGCT	9 cut(s)	18, 68, 320, 355, 572, 587, 752, 817, 1136
AluI	AGCT	9 cut(s)	18, 68, 320, 355, 572, 587, 752, 817, 1136
Alw21I	GWGCWC	1 cut(s)	819
Alw26I	GTCTC	2 cut(s)	161, 1218
Aor51HI	AGCGCT	1 cut(s)	785
AoxI	GGCC	4 cut(s)	296, 690, 733, 1009
ApaI	GGGCCC	1 cut(s)	1013
ApoI	RAATTY	4 cut(s)	509, 634, 1070, 1183
Asp718I	GGTACC	1 cut(s)	179
AspA2I	CCTAGG	1 cut(s)	712
AspLEI	GCGC	4 cut(s)	139, 206, 556, 786
AspS9I	GGNCC	3 cut(s)	734, 1009, 1010
AvrII	CCTAGG	1 cut(s)	712
BaeGI	GKGCMC	1 cut(s)	1013
BalI	TGGCCA	1 cut(s)	298
BanI	GGYRCC	2 cut(s)	179, 261
BanII	GRGCYC	2 cut(s)	819, 1013
Bbv12I	GWGCWC	1 cut(s)	819
BccI	CCATC	5 cut(s)	307, 653, 964, 1025, 1105
BceAI	ACGGC	2 cut(s)	531, 897
BclI	TGATCA	1 cut(s)	322
BcoDI	GTCTC	2 cut(s)	161, 1218
BcuI	ACTAGT	1 cut(s)	76
BfaI	CTAG	4 cut(s)	77, 317, 713, 849
BfmI	CTRYAG	1 cut(s)	1014
BfoI	RGCGCY	2 cut(s)	207, 787
BfuAI	ACCTGC	1 cut(s)	758
BisI	GCNGC	2 cut(s)	90, 975
BlnI	CCTAGG	1 cut(s)	712
BlsI	GCNGC	2 cut(s)	91, 976
BmcAI	AGTACT	1 cut(s)	806
BmgT120I	GGNCC	3 cut(s)	734, 1009, 1010
BmiI	GGNNCC	5 cut(s)	181, 263, 736, 1010, 1011
BmsI	GCATC	4 cut(s)	76, 113, 527, 541
BplI	GAGNNNNNCTC	2 cut(s)	1145, 1177
BsaJI	CCNNGG	3 cut(s)	109, 712, 1077
BsaXI	ACNNNNNCTCC	2 cut(s)	708, 738
Bsc4I	CCNNNNNNNGG	3 cut(s)	53, 742, 1111
Bse1I	ACTGG	2 cut(s)	411, 481
Bse3DI	GCAATG	1 cut(s)	344
BseDI	CCNNGG	3 cut(s)	109, 712, 1077
BseGI	GGATG	5 cut(s)	43, 104, 339, 943, 1036
BseLI	CCNNNNNNNGG	3 cut(s)	53, 742, 1111
BseMI	GCAATG	1 cut(s)	344
BseMII	CTCAG	1 cut(s)	832
BseNI	ACTGG	2 cut(s)	411, 481
BseRI	GAGGAG	4 cut(s)	179, 573, 732, 827
BseSI	GKGCMC	1 cut(s)	1013
BseYI	CCCAGC	1 cut(s)	583
Bsh1236I	CGCG	1 cut(s)	556
BshFI	GGCC	4 cut(s)	298, 692, 735, 1011
BshNI	GGYRCC	2 cut(s)	179, 261
BsiHKAI	GWGCWC	1 cut(s)	819
BslI	CCNNNNNNNGG	3 cut(s)	53, 742, 1111
BsmAI	GTCTC	2 cut(s)	161, 1218
BsnI	GGCC	4 cut(s)	298, 692, 735, 1011
Bsp120I	GGGCCC	1 cut(s)	1009
Bsp1286I	GDGCHC	2 cut(s)	819, 1013
Bsp143I	GATC	2 cut(s)	49, 322
Bsp19I	CCATGG	1 cut(s)	109
BspACI	CCGC	3 cut(s)	89, 259, 974
BspANI	GGCC	4 cut(s)	298, 692, 735, 1011
BspCNI	CTCAG	1 cut(s)	831
BspFNI	CGCG	1 cut(s)	556
BspLI	GGNNCC	5 cut(s)	181, 263, 736, 1010, 1011
BspMI	ACCTGC	1 cut(s)	758
BspT107I	GGYRCC	2 cut(s)	179, 261
BsrDI	GCAATG	1 cut(s)	344
BsrI	ACTGG	2 cut(s)	411, 481
BssECI	CCNNGG	3 cut(s)	109, 712, 1077
BssMI	GATC	2 cut(s)	49, 322
BssT1I	CCWWGG	3 cut(s)	109, 712, 1077
Bst4CI	ACNGT	3 cut(s)	196, 653, 1024
BstC8I	GCNNGC	2 cut(s)	570, 997
BstDEI	CTNAG	2 cut(s)	428, 818
BstDSI	CCRYGG	1 cut(s)	109
BstEII	GGTNACC	1 cut(s)	1058
BstF5I	GGATG	5 cut(s)	43, 104, 339, 943, 1036
BstFNI	CGCG	1 cut(s)	556
BstH2I	RGCGCY	2 cut(s)	207, 787
BstHHI	GCGC	4 cut(s)	139, 206, 556, 786
BstKTI	GATC	2 cut(s)	52, 325
BstMAI	GTCTC	2 cut(s)	161, 1218
BstMBI	GATC	2 cut(s)	49, 322
BstMWI	GCNNNNNNNGC	3 cut(s)	248, 689, 974
BstNSI	RCATGY	2 cut(s)	999, 1148
BstPI	GGTNACC	1 cut(s)	1058
BstSFI	CTRYAG	1 cut(s)	1014
BstSLI	GKGCMC	1 cut(s)	1013
BstUI	CGCG	1 cut(s)	556
BsuRI	GGCC	4 cut(s)	298, 692, 735, 1011
BtgI	CCRYGG	1 cut(s)	109
BtgZI	GCGATG	1 cut(s)	983
BtsCI	GGATG	5 cut(s)	43, 104, 339, 943, 1036
BveI	ACCTGC	1 cut(s)	758
Cac8I	GCNNGC	2 cut(s)	570, 997
CfoI	GCGC	4 cut(s)	139, 206, 556, 786
Cfr13I	GGNCC	3 cut(s)	734, 1009, 1010
CseI	GACGC	1 cut(s)	533
Csp6I	GTAC	3 cut(s)	180, 805, 1128
CviAII	CATG	7 cut(s)	110, 125, 143, 239, 292, 996, 1145
CviQI	GTAC	3 cut(s)	180, 805, 1128
DdeI	CTNAG	2 cut(s)	428, 818
DpnI	GATC	2 cut(s)	51, 324
DpnII	GATC	2 cut(s)	49, 322
EaeI	YGGCCR	1 cut(s)	296
Ecl136II	GAGCTC	1 cut(s)	817
Eco130I	CCWWGG	3 cut(s)	109, 712, 1077
Eco24I	GRGCYC	2 cut(s)	819, 1013
Eco47III	AGCGCT	1 cut(s)	785
Eco53kI	GAGCTC	1 cut(s)	817
Eco57I	CTGAAG	3 cut(s)	371, 689, 768
Eco91I	GGTNACC	1 cut(s)	1058
EcoICRI	GAGCTC	1 cut(s)	817
EcoO109I	RGGNCCY	3 cut(s)	734, 1009, 1010
EcoO65I	GGTNACC	1 cut(s)	1058
EcoRI	GAATTC	1 cut(s)	1070
EcoT14I	CCWWGG	3 cut(s)	109, 712, 1077
EcoT38I	GRGCYC	2 cut(s)	819, 1013
ErhI	CCWWGG	3 cut(s)	109, 712, 1077
FaeI	CATG	7 cut(s)	113, 128, 146, 242, 295, 999, 1148
FatI	CATG	7 cut(s)	109, 124, 142, 238, 291, 995, 1144
FbaI	TGATCA	1 cut(s)	322
Fnu4HI	GCNGC	2 cut(s)	90, 975
FokI	GGATG	5 cut(s)	30, 91, 326, 950, 1043
FriOI	GRGCYC	2 cut(s)	819, 1013
Fsp4HI	GCNGC	2 cut(s)	90, 975
FspBI	CTAG	4 cut(s)	77, 317, 713, 849
GlaI	GCGC	4 cut(s)	138, 205, 555, 785
GluI	GCNGC	2 cut(s)	90, 975
GsaI	CCCAGC	1 cut(s)	587
HaeII	RGCGCY	2 cut(s)	207, 787
HaeIII	GGCC	4 cut(s)	298, 692, 735, 1011
HgaI	GACGC	1 cut(s)	533
HhaI	GCGC	4 cut(s)	139, 206, 556, 786
Hin1II	CATG	7 cut(s)	113, 128, 146, 242, 295, 999, 1148
Hin6I	GCGC	4 cut(s)	137, 204, 554, 784
HinP1I	GCGC	4 cut(s)	137, 204, 554, 784
HincII	GTYRAC	2 cut(s)	366, 859
HindII	GTYRAC	2 cut(s)	366, 859
HindIII	AAGCTT	1 cut(s)	750
HinfI	GANTC	5 cut(s)	493, 598, 620, 1154, 1189
HpaI	GTTAAC	1 cut(s)	859
Hpy166II	GTNNAC	2 cut(s)	366, 859
Hpy188I	TCNGA	4 cut(s)	708, 821, 1182, 1215
Hpy188III	TCNNGA	5 cut(s)	47, 395, 548, 962, 1100
Hpy8I	GTNNAC	2 cut(s)	366, 859
HpyAV	CCTTC	2 cut(s)	784, 833
HpyCH4III	ACNGT	3 cut(s)	196, 653, 1024
HpyCH4V	TGCA	7 cut(s)	104, 251, 530, 767, 896, 995, 999
HpyF10VI	GCNNNNNNNGC	3 cut(s)	248, 689, 974
HpyF3I	CTNAG	2 cut(s)	428, 818
Hsp92II	CATG	7 cut(s)	113, 128, 146, 242, 295, 999, 1148
HspAI	GCGC	4 cut(s)	137, 204, 554, 784
KpnI	GGTACC	1 cut(s)	183
Ksp22I	TGATCA	1 cut(s)	322
KspAI	GTTAAC	1 cut(s)	859
Kzo9I	GATC	2 cut(s)	49, 322
LmnI	GCTCC	2 cut(s)	65, 814
LweI	GCATC	4 cut(s)	76, 113, 527, 541
MaeI	CTAG	4 cut(s)	77, 317, 713, 849
MaeIII	GTNAC	4 cut(s)	190, 1036, 1058, 1147
MalI	GATC	2 cut(s)	51, 324
MboI	GATC	2 cut(s)	49, 322
MboII	GAAGA	3 cut(s)	227, 476, 673
MfeI	CAATTG	1 cut(s)	762
MhlI	GDGCHC	2 cut(s)	819, 1013
MlsI	TGGCCA	1 cut(s)	298
MluCI	AATT	7 cut(s)	480, 509, 634, 684, 762, 1070, 1183
MluNI	TGGCCA	1 cut(s)	298
MlyI	GAGTC	1 cut(s)	1163
MnlI	CCTC	7 cut(s)	157, 426, 551, 710, 805, 969, 1048
Mox20I	TGGCCA	1 cut(s)	298
MscI	TGGCCA	1 cut(s)	298
MseI	TTAA	5 cut(s)	501, 540, 758, 858, 1026
MslI	CAYNNNNRTG	1 cut(s)	237
Msp20I	TGGCCA	1 cut(s)	298
MspA1I	CMGCKG	2 cut(s)	572, 587
MunI	CAATTG	1 cut(s)	762
MvnI	CGCG	1 cut(s)	556
MwoI	GCNNNNNNNGC	3 cut(s)	248, 689, 974
NcoI	CCATGG	1 cut(s)	109
NdeII	GATC	2 cut(s)	49, 322
NlaIII	CATG	7 cut(s)	113, 128, 146, 242, 295, 999, 1148
NlaIV	GGNNCC	5 cut(s)	181, 263, 736, 1010, 1011
NmuCI	GTSAC	2 cut(s)	190, 1147
NspI	RCATGY	2 cut(s)	999, 1148
PaeI	GCATGC	1 cut(s)	999
PaqCI	CACCTGC	1 cut(s)	758
PfeI	GAWTC	4 cut(s)	493, 598, 620, 1189
PkrI	GCNGC	2 cut(s)	91, 976
PleI	GAGTC	1 cut(s)	1162
PpsI	GAGTC	1 cut(s)	1162
PsiI	TTATAA	1 cut(s)	627
Psp124BI	GAGCTC	1 cut(s)	819
PspEI	GGTNACC	1 cut(s)	1058
PspFI	CCCAGC	1 cut(s)	583
PspN4I	GGNNCC	5 cut(s)	181, 263, 736, 1010, 1011
PspOMI	GGGCCC	1 cut(s)	1009
PspPI	GGNCC	3 cut(s)	734, 1009, 1010
PvuII	CAGCTG	2 cut(s)	572, 587
RsaI	GTAC	3 cut(s)	181, 806, 1129
RsaNI	GTAC	3 cut(s)	180, 805, 1128
RseI	CAYNNNNRTG	1 cut(s)	237
SacI	GAGCTC	1 cut(s)	819
SaqAI	TTAA	5 cut(s)	501, 540, 758, 858, 1026
SatI	GCNGC	2 cut(s)	90, 975
Sau3AI	GATC	2 cut(s)	49, 322
Sau96I	GGNCC	3 cut(s)	734, 1009, 1010
ScaI	AGTACT	1 cut(s)	806
SchI	GAGTC	1 cut(s)	1163
SduI	GDGCHC	2 cut(s)	819, 1013
SfaNI	GCATC	4 cut(s)	76, 113, 527, 541
SfcI	CTRYAG	1 cut(s)	1014
SmiMI	CAYNNNNRTG	1 cut(s)	237
SpeI	ACTAGT	1 cut(s)	76
SphI	GCATGC	1 cut(s)	999
Sse9I	AATT	7 cut(s)	480, 509, 634, 684, 762, 1070, 1183
SsiI	CCGC	3 cut(s)	89, 259, 974
SspI	AATATT	2 cut(s)	31, 1173
SspMI	CTAG	4 cut(s)	77, 317, 713, 849
SstI	GAGCTC	1 cut(s)	819
StyI	CCWWGG	3 cut(s)	109, 712, 1077
TaaI	ACNGT	3 cut(s)	196, 653, 1024
TaqI	TCGA	1 cut(s)	1138
TasI	AATT	7 cut(s)	480, 509, 634, 684, 762, 1070, 1183
TatI	WGTACW	1 cut(s)	804
TauI	GCSGC	2 cut(s)	92, 977
TfiI	GAWTC	4 cut(s)	493, 598, 620, 1189
Tru1I	TTAA	5 cut(s)	501, 540, 758, 858, 1026
Tru9I	TTAA	5 cut(s)	501, 540, 758, 858, 1026
TseFI	GTSAC	2 cut(s)	190, 1147
Tsp45I	GTSAC	2 cut(s)	190, 1147
TspDTI	ATGAA	7 cut(s)	32, 113, 227, 448, 624, 853, 954
TspGWI	ACGGA	1 cut(s)	1166
XapI	RAATTY	4 cut(s)	509, 634, 1070, 1183
XceI	RCATGY	2 cut(s)	999, 1148
XmaJI	CCTAGG	1 cut(s)	712
XspI	CTAG	4 cut(s)	77, 317, 713, 849
ZrmI	AGTACT	1 cut(s)	806

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.