FvH4_3g18220

Alpha-1,3 1,6-mannosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0004054
Physical Location & Seq
Reverse (-)
11656224 .. 11659965
3742 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g18220.t1

Sequence Viewer

Length: 1218 bp
ATGGCGAAGAGAGGAGGGAGCTCAAAGTTGAACGTGGCTATTATTCATCCCGATCTGGGTATAGGAGGAGCTGAAAGACTAATTGTGGATGCGGCTGTTGAGTTGGCATCGCATGGCCATAAAGTTCACGTCTTTACCTCTCACCATGATAAAGATCGATGCTTTGAGGAGACCATCTCTGGTGCCTTTCCTGTTACTGTATATGGTGCTTTCCTACCCCGGCATGTATTCTACCATCTTCATGCTTTGTGTGCATATCTGCGGTGCCTCTACGTGGCCCTCTGCGTGCTAGTAATGTGGCCGTCGTTTGATGTAATACTAGTAGATCAGGTCTCTGTTGTCATCCCATTGCTGAAGCTTAAGAAGTCGGCAAAGGTTCTGTTTTACTGTCATTTTCCAGATTTATTGCTGGCTCAACACACAACTGTTTTGAGGAGGATATACAGAAAACCCATAGACTTCATAGAAGAAATGACAACCGGAATGGCTGATAAGATTCTTGTTAACAGCAAATTTACAGCACTGACGTTTGCAAAGACATTCAAGCATCTTCATGCACGAGGAATTAAACCAGCTGTTCTTTACCCAGCTGTCAATGTGAATCAATTTGATGAACCTAGCATTTCTCACAAGTTAAATTTTCTCTCTATCAACCGTTTTGAGAGGAAAAAGAATATAGACTTGGCGATTTCAGCCTTTGCCATGCTTCACACCCTTGAAGGGGATAATCTGGCTGAAGCTTCCTTGACAATTGCAGGTGGCTTTGACAATCGGTTGAGAGAAAATGTCGAGTACTTGGAGGAGCTAAAAAATTTAGCAGAAAGGGAAGGAGTGTCCAATCAGGTTAAGTTCATCACATCTTGCTCAACAGCCGAAAGAAATGCACTACTCTCCCAATGCCTCTGTGTCATTTATACGCCAAAGGATGAACACTTTGGCATTGTTCCTCTGGAGGCAATGGCGGCTCATAAACCAGTTATTGCATGCAATAGTGGAGGTCCTATGGAGACGGTTAAGAACGGTGTAACGGGATTTCTTTGTGAAAGTAACCCAAGAGAGTTCTCCTTGGCTATGGCTAAACTCATTCAAGATCCACAGATGGCACAGAGAATGGGTGTAGAAGCTCGGCTGCATGTTACTGAGTCATTCTCTACAAAAATATTTGGTCAGCATTTGAATCAGTACCTAGTTGATGTTGCACGGGCCAAAGAAGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00510 ko00513 ko01100 map00510 map00513 map01100
Pfam Domains
Protein Families
Glyco_transf_4 Glycos_transf_1

Protein Analysis

406

Amino Acids

45.19

Weight (kDa)

8.01

Isoelectric Point (pI)

25.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_4 PF13439 21 - 199 3.4e-13 Glycosyltransferase Family 4
Glyco_trans_4_4 PF13579 22 - 175 4.6e-06 Glycosyl transferase 4-like domain
GT4-conflict PF20706 186 - 343 6.4e-10 Family 4 Glycosyltransferase in conflict systems
Glycos_transf_1 PF00534 209 - 376 2.9e-37 Glycosyl transferases group 1
Glyco_trans_1_4 PF13692 214 - 364 3.2e-21 Glycosyl transferases group 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 746
Acc36I ACCTGC 1 cut(s) 746
AccB1I GGYRCC 2 cut(s) 182, 264
AciI CCGC 3 cut(s) 92, 262, 962
AclWI GGATC 1 cut(s) 1085
AcoI YGGCCR 2 cut(s) 115, 299
AcsI RAATTY 3 cut(s) 512, 637, 811
AcuI CTGAAG 2 cut(s) 374, 756
AfaI GTAC 2 cut(s) 794, 1184
AfiI CCNNNNNNNGG 4 cut(s) 56, 274, 720, 721
AflII CTTAAG 1 cut(s) 359
AgsI TTSAA 5 cut(s) 31, 544, 719, 1088, 1177
AhlI ACTAGT 1 cut(s) 319
AjiI CACGTC 1 cut(s) 130
AjuI GAANNNNNNNTTGG 2 cut(s) 665, 697
AluBI AGCT 8 cut(s) 21, 71, 358, 575, 590, 740, 805, 1124
AluI AGCT 8 cut(s) 21, 71, 358, 575, 590, 740, 805, 1124
Alw21I GWGCWC 1 cut(s) 23
Alw26I GTCTC 3 cut(s) 164, 337, 1001
AlwI GGATC 1 cut(s) 1085
AoxI GGCC 4 cut(s) 115, 276, 299, 1203
ApeKI GCWGC 1 cut(s) 1129
ApoI RAATTY 3 cut(s) 512, 637, 811
AspS9I GGNCC 3 cut(s) 277, 998, 1203
AsuC2I CCSGG 1 cut(s) 220
AsuHPI GGTGA 1 cut(s) 134
AvaII GGWCC 1 cut(s) 998
BalI TGGCCA 1 cut(s) 117
BanI GGYRCC 2 cut(s) 182, 264
BanII GRGCYC 1 cut(s) 23
BauI CACGAG 1 cut(s) 558
Bbv12I GWGCWC 1 cut(s) 23
BbvI GCAGC 1 cut(s) 1116
BccI CCATC 3 cut(s) 182, 243, 1093
BceAI ACGGC 1 cut(s) 286
BcgI CGANNNNNNTGC 2 cut(s) 863, 897
BcnI CCSGG 1 cut(s) 220
BcoDI GTCTC 3 cut(s) 164, 337, 1001
BcuI ACTAGT 1 cut(s) 319
BfaI CTAG 4 cut(s) 290, 320, 618, 1187
BfrI CTTAAG 1 cut(s) 359
BfuAI ACCTGC 1 cut(s) 746
BisI GCNGC 3 cut(s) 93, 963, 1130
BlsI GCNGC 3 cut(s) 94, 964, 1131
BmcAI AGTACT 1 cut(s) 794
Bme1390I CCNGG 1 cut(s) 220
Bme18I GGWCC 1 cut(s) 998
BmgBI CACGTC 1 cut(s) 130
BmgT120I GGNCC 3 cut(s) 277, 998, 1203
BmiI GGNNCC 2 cut(s) 184, 266
BmrFI CCNGG 1 cut(s) 220
BmsI GCATC 4 cut(s) 79, 116, 149, 556
BplI GAGNNNNNCTC 4 cut(s) 161, 193, 1133, 1165
BpmI CTGGAG 1 cut(s) 971
BpuMI CCSGG 1 cut(s) 220
Bsa29I ATCGAT 1 cut(s) 157
BsaAI YACGTR 1 cut(s) 274
BsaBI GATNNNNATC 1 cut(s) 153
BsaI GGTCTC 2 cut(s) 164, 337
BsaJI CCNNGG 2 cut(s) 218, 1065
BsaWI WCCGGW 1 cut(s) 479
Bsc4I CCNNNNNNNGG 4 cut(s) 56, 274, 720, 721
Bse1I ACTGG 1 cut(s) 974
Bse3DI GCAATG 2 cut(s) 347, 963
Bse8I GATNNNNATC 1 cut(s) 153
BseCI ATCGAT 1 cut(s) 157
BseDI CCNNGG 2 cut(s) 218, 1065
BseGI GGATG 4 cut(s) 46, 94, 342, 931
BseJI GATNNNNATC 1 cut(s) 153
BseLI CCNNNNNNNGG 4 cut(s) 56, 274, 720, 721
BseMI GCAATG 2 cut(s) 347, 963
BseMII CTCAG 1 cut(s) 1131
BseNI ACTGG 1 cut(s) 974
BseRI GAGGAG 5 cut(s) 27, 81, 182, 448, 815
BseXI GCAGC 1 cut(s) 1116
BseYI CCCAGC 1 cut(s) 586
BshFI GGCC 4 cut(s) 117, 278, 301, 1205
BshNI GGYRCC 2 cut(s) 182, 264
BshVI ATCGAT 1 cut(s) 157
BsiHKAI GWGCWC 1 cut(s) 23
BsiSI CCGG 2 cut(s) 220, 480
BslI CCNNNNNNNGG 4 cut(s) 56, 274, 720, 721
BsmAI GTCTC 3 cut(s) 164, 337, 1001
BsmBI CGTCTC 1 cut(s) 1001
BsnI GGCC 4 cut(s) 117, 278, 301, 1205
Bso31I GGTCTC 2 cut(s) 164, 337
Bsp1286I GDGCHC 1 cut(s) 23
Bsp143I GATC 4 cut(s) 52, 154, 325, 1090
BspACI CCGC 3 cut(s) 92, 262, 962
BspANI GGCC 4 cut(s) 117, 278, 301, 1205
BspCNI CTCAG 1 cut(s) 1132
BspDI ATCGAT 1 cut(s) 157
BspLI GGNNCC 2 cut(s) 184, 266
BspMI ACCTGC 1 cut(s) 746
BspPI GGATC 1 cut(s) 1085
BspT107I GGYRCC 2 cut(s) 182, 264
BspTI CTTAAG 1 cut(s) 359
BspTNI GGTCTC 2 cut(s) 164, 337
BsrDI GCAATG 2 cut(s) 347, 963
BsrI ACTGG 1 cut(s) 974
BssECI CCNNGG 2 cut(s) 218, 1065
BssMI GATC 4 cut(s) 52, 154, 325, 1090
BssSI CACGAG 1 cut(s) 558
BssT1I CCWWGG 1 cut(s) 1065
Bst2BI CACGAG 1 cut(s) 558
Bst4CI ACNGT 6 cut(s) 199, 389, 427, 656, 1012, 1022
Bst6I CTCTTC 1 cut(s) 2
BstAFI CTTAAG 1 cut(s) 359
BstBAI YACGTR 1 cut(s) 274
BstC8I GCNNGC 3 cut(s) 287, 411, 985
BstDEI CTNAG 1 cut(s) 1140
BstF5I GGATG 4 cut(s) 46, 94, 342, 931
BstKTI GATC 4 cut(s) 55, 157, 328, 1093
BstMAI GTCTC 3 cut(s) 164, 337, 1001
BstMBI GATC 4 cut(s) 52, 154, 325, 1090
BstMWI GCNNNNNNNGC 3 cut(s) 251, 692, 962
BstNSI RCATGY 3 cut(s) 227, 987, 1136
BstSCI CCNGG 1 cut(s) 218
BstV1I GCAGC 1 cut(s) 1116
BstX2I RGATCY 1 cut(s) 1090
BstYI RGATCY 1 cut(s) 1090
Bsu15I ATCGAT 1 cut(s) 157
BsuRI GGCC 4 cut(s) 117, 278, 301, 1205
BsuTUI ATCGAT 1 cut(s) 157
BtgZI GCGATG 1 cut(s) 93
BtrI CACGTC 1 cut(s) 130
BtsCI GGATG 4 cut(s) 46, 94, 342, 931
BtsIMutI CAGTG 1 cut(s) 521
BveI ACCTGC 1 cut(s) 746
Cac8I GCNNGC 3 cut(s) 287, 411, 985
Cfr13I GGNCC 3 cut(s) 277, 998, 1203
ClaI ATCGAT 1 cut(s) 157
Csp6I GTAC 2 cut(s) 793, 1183
CviAII CATG 8 cut(s) 113, 146, 224, 242, 554, 703, 984, 1133
CviQI GTAC 2 cut(s) 793, 1183
DdeI CTNAG 1 cut(s) 1140
DpnI GATC 4 cut(s) 54, 156, 327, 1092
DpnII GATC 4 cut(s) 52, 154, 325, 1090
EaeI YGGCCR 2 cut(s) 115, 299
Eam1104I CTCTTC 1 cut(s) 2
EarI CTCTTC 1 cut(s) 2
Ecl136II GAGCTC 1 cut(s) 21
Eco130I CCWWGG 1 cut(s) 1065
Eco24I GRGCYC 1 cut(s) 23
Eco31I GGTCTC 2 cut(s) 164, 337
Eco47I GGWCC 1 cut(s) 998
Eco53kI GAGCTC 1 cut(s) 21
Eco57I CTGAAG 2 cut(s) 374, 756
EcoICRI GAGCTC 1 cut(s) 21
EcoO109I RGGNCCY 1 cut(s) 998
EcoT14I CCWWGG 1 cut(s) 1065
EcoT38I GRGCYC 1 cut(s) 23
ErhI CCWWGG 1 cut(s) 1065
Esp3I CGTCTC 1 cut(s) 1001
FaeI CATG 8 cut(s) 116, 149, 227, 245, 557, 706, 987, 1136
FatI CATG 8 cut(s) 112, 145, 223, 241, 553, 702, 983, 1132
Fnu4HI GCNGC 3 cut(s) 93, 963, 1130
FokI GGATG 4 cut(s) 33, 101, 329, 938
FriOI GRGCYC 1 cut(s) 23
Fsp4HI GCNGC 3 cut(s) 93, 963, 1130
FspBI CTAG 4 cut(s) 290, 320, 618, 1187
GluI GCNGC 3 cut(s) 93, 963, 1130
GsaI CCCAGC 1 cut(s) 590
GsuI CTGGAG 1 cut(s) 971
HaeIII GGCC 4 cut(s) 117, 278, 301, 1205
HapII CCGG 2 cut(s) 220, 480
Hin1II CATG 8 cut(s) 116, 149, 227, 245, 557, 706, 987, 1136
HincII GTYRAC 1 cut(s) 505
HindII GTYRAC 1 cut(s) 505
HindIII AAGCTT 2 cut(s) 356, 738
HinfI GANTC 4 cut(s) 496, 601, 1142, 1177
HpaI GTTAAC 1 cut(s) 505
HpaII CCGG 2 cut(s) 220, 480
HphI GGTGA 1 cut(s) 134
Hpy166II GTNNAC 2 cut(s) 127, 505
Hpy188III TCNNGA 4 cut(s) 50, 398, 950, 1088
Hpy8I GTNNAC 2 cut(s) 127, 505
Hpy99I CGWCG 1 cut(s) 307
HpyAV CCTTC 2 cut(s) 713, 821
HpyCH4III ACNGT 6 cut(s) 199, 389, 427, 656, 1012, 1022
HpyCH4IV ACGT 4 cut(s) 33, 129, 273, 527
HpyCH4V TGCA 9 cut(s) 254, 533, 557, 755, 884, 983, 987, 1132, 1199
HpyF10VI GCNNNNNNNGC 3 cut(s) 251, 692, 962
HpyF3I CTNAG 1 cut(s) 1140
HpySE526I ACGT 4 cut(s) 33, 129, 273, 527
Hsp92II CATG 8 cut(s) 116, 149, 227, 245, 557, 706, 987, 1136
KspAI GTTAAC 1 cut(s) 505
Kzo9I GATC 4 cut(s) 52, 154, 325, 1090
LmnI GCTCC 3 cut(s) 18, 68, 802
Lsp1109I GCAGC 1 cut(s) 1116
LweI GCATC 4 cut(s) 79, 116, 149, 556
MaeI CTAG 4 cut(s) 290, 320, 618, 1187
MaeII ACGT 4 cut(s) 33, 129, 273, 527
MaeIII GTNAC 4 cut(s) 193, 1024, 1046, 1135
MalI GATC 4 cut(s) 54, 156, 327, 1092
MboI GATC 4 cut(s) 52, 154, 325, 1090
MboII GAAGA 4 cut(s) 19, 230, 479, 542
MfeI CAATTG 1 cut(s) 750
MflI RGATCY 1 cut(s) 1090
MhlI GDGCHC 1 cut(s) 23
MlsI TGGCCA 1 cut(s) 117
MluCI AATT 7 cut(s) 81, 512, 564, 605, 637, 750, 811
MluNI TGGCCA 1 cut(s) 117
MlyI GAGTC 1 cut(s) 1151
Mox20I TGGCCA 1 cut(s) 117
MscI TGGCCA 1 cut(s) 117
MseI TTAA 6 cut(s) 360, 504, 567, 635, 846, 1014
MslI CAYNNNNRTG 2 cut(s) 240, 552
Msp20I TGGCCA 1 cut(s) 117
MspA1I CMGCKG 2 cut(s) 575, 590
MspCI CTTAAG 1 cut(s) 359
MspI CCGG 2 cut(s) 220, 480
MspR9I CCNGG 1 cut(s) 220
MunI CAATTG 1 cut(s) 750
MwoI GCNNNNNNNGC 3 cut(s) 251, 692, 962
NciI CCSGG 1 cut(s) 220
NdeII GATC 4 cut(s) 52, 154, 325, 1090
NlaIII CATG 8 cut(s) 116, 149, 227, 245, 557, 706, 987, 1136
NlaIV GGNNCC 2 cut(s) 184, 266
NmeAIII GCCGAG 1 cut(s) 1105
NspI RCATGY 3 cut(s) 227, 987, 1136
PaeI GCATGC 1 cut(s) 987
PaqCI CACCTGC 1 cut(s) 746
PfeI GAWTC 3 cut(s) 496, 601, 1177
PkrI GCNGC 3 cut(s) 94, 964, 1131
PleI GAGTC 1 cut(s) 1150
PpsI GAGTC 1 cut(s) 1150
Ppu21I YACGTR 1 cut(s) 274
PpuMI RGGWCCY 1 cut(s) 998
Psp124BI GAGCTC 1 cut(s) 23
Psp5II RGGWCCY 1 cut(s) 998
PspFI CCCAGC 1 cut(s) 586
PspN4I GGNNCC 2 cut(s) 184, 266
PspPI GGNCC 3 cut(s) 277, 998, 1203
PspPPI RGGWCCY 1 cut(s) 998
PsuI RGATCY 1 cut(s) 1090
PvuII CAGCTG 2 cut(s) 575, 590
RsaI GTAC 2 cut(s) 794, 1184
RsaNI GTAC 2 cut(s) 793, 1183
RseI CAYNNNNRTG 2 cut(s) 240, 552
SacI GAGCTC 1 cut(s) 23
SaqAI TTAA 6 cut(s) 360, 504, 567, 635, 846, 1014
SatI GCNGC 3 cut(s) 93, 963, 1130
Sau3AI GATC 4 cut(s) 52, 154, 325, 1090
Sau96I GGNCC 3 cut(s) 277, 998, 1203
ScaI AGTACT 1 cut(s) 794
SchI GAGTC 1 cut(s) 1151
ScrFI CCNGG 1 cut(s) 220
SduI GDGCHC 1 cut(s) 23
SfaNI GCATC 4 cut(s) 79, 116, 149, 556
SinI GGWCC 1 cut(s) 998
SmiMI CAYNNNNRTG 2 cut(s) 240, 552
SmlI CTYRAG 1 cut(s) 359
SmoI CTYRAG 1 cut(s) 359
SpeI ACTAGT 1 cut(s) 319
SphI GCATGC 1 cut(s) 987
Sse9I AATT 7 cut(s) 81, 512, 564, 605, 637, 750, 811
SsiI CCGC 3 cut(s) 92, 262, 962
SspI AATATT 1 cut(s) 1161
SspMI CTAG 4 cut(s) 290, 320, 618, 1187
SstI GAGCTC 1 cut(s) 23
StyD4I CCNGG 1 cut(s) 218
StyI CCWWGG 1 cut(s) 1065
TaaI ACNGT 6 cut(s) 199, 389, 427, 656, 1012, 1022
TaiI ACGT 4 cut(s) 36, 132, 276, 530
TaqI TCGA 2 cut(s) 157, 789
TasI AATT 7 cut(s) 81, 512, 564, 605, 637, 750, 811
TatI WGTACW 1 cut(s) 792
TauI GCSGC 2 cut(s) 95, 965
TfiI GAWTC 3 cut(s) 496, 601, 1177
Tru1I TTAA 6 cut(s) 360, 504, 567, 635, 846, 1014
Tru9I TTAA 6 cut(s) 360, 504, 567, 635, 846, 1014
TscAI CASTG 1 cut(s) 528
TseI GCWGC 1 cut(s) 1129
TspDTI ATGAA 7 cut(s) 35, 230, 451, 542, 627, 841, 942
TspRI CASTG 1 cut(s) 528
Vha464I CTTAAG 1 cut(s) 359
VpaK11BI GGWCC 1 cut(s) 998
XapI RAATTY 3 cut(s) 512, 637, 811
XceI RCATGY 3 cut(s) 227, 987, 1136
XspI CTAG 4 cut(s) 290, 320, 618, 1187
ZrmI AGTACT 1 cut(s) 794
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.