Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0004054

Physical Location & Seq

Genomic Coordinates Reverse (-)

24484137 .. 24490557

Gene Structure 6421 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG216800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGTCATTCGGTTCTCCAGGTGCCTTTCCTGTTACTGTGTACGGTGCTTTCCTACCCCGACATGTATTCTATCGTCTTCACGCTTTGTGTGCATACCTACGGTGCCTGTATGTTGCCCTCTGCGTGCTAGTTATGTGGCCGTCTTTTGATGTAATACTAGTAGATCAGGTTTCTGTTGTCATCCCATTGCTGAAGCTTAAGAAGTCGGCAAAGGTGTTGTTTTATTGTCATTTTCCAGATTTATTGCTCGCTCAACACACAACTATTCTGAGGAGGATATATAGAAAACCCATAGACTTCGTAGAAGAAATGACAACTGGAATGGCAGATAAGATTCTTGTTAACAGCAAATTTACAGCACTTACATTTGCAAAGACATTCAAGCATCTTGATGCACGAGGAATTAAGCCAGCTGTTCTTCACCCAGCTGTCAATGTGAATCAATTCGATGAACCTAGCAATTCTCCTAAGTTAAATTTTCTCTCCATCAACCGTTTTGAGAGGAAAAAGAATATAGACTTGGCAATTTCAGCTTTTGCCATGCTTCGCACCCTTGAAGGAGATATGCTTCAAGGTCTTAATCTGGCTGAAGCTTCCTTGACAATTGCAGGTGGCTTTGACAACCGGTTGAGAGAAAATGTTGAGTACTTGGAGGAGCTCAGAAGTTTAGCAGAAAGGGAAGGAGTGTCCAATCAGGTTAACTTCATCACATCTTGCTCAACAGCCGAAAGAAATGCACTACTCTCCCAGTGCCTGTGTGTCATTTATACACCAAAGGATGAACACTTTGGCATTGTTCCTCTGGAGGCAATGGCAGCTCATAAACCAGTTATTGCGTGCAACAGTGGGGGTCCTGTAGAGACAGTTAAGAATGGCGAAACGGGATTTCTTTGTGAAAGTAACCCAAGAGAGTTTTCCTTGGCTATGGCTAAACTCATTCAAGAACCACAGATGGCGCAACGAATGGGTGTAGAAGCTAGGCGGCATGTTACAGAGTCATTCTCTACAAAAATATTCGGTCAGCATTTGAATCAATACCTAGTTGATGTTGCTCGGGCTAAAGAAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 map00510 map00513 map01100

Pfam Domains

Protein Families

Glyco_transf_4 Glycos_transf_1

Protein Analysis

356

Amino Acids

39.89

Weight (kDa)

8.31

Isoelectric Point (pI)

34.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GT4-conflict	PF20706	133 - 291	3.5e-09	Family 4 Glycosyltransferase in conflict systems
Glycos_transf_1	PF00534	148 - 328	5.9e-36	Glycosyl transferases group 1
Glyco_trans_1_4	PF13692	160 - 314	7.3e-20	Glycosyl transferases group 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004054)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78800
fragaria_vesca	FvH4_3g18220 FvH4_3g18220
malus_domestica	MD00G1077500.v1.1 MD00G1078000.v1.1 MD03G1178900.v1.1 MD11G1264500.v1.1
prunus_persica	Prupe.4G169100_v2.0.a1 Prupe.4G241400_v2.0.a1 Prupe.4G241400_v2.0.a1 Prupe.4G241400_v2.0.a1 Prupe.5G052700_v2.0.a1 Prupe.5G052700_v2.0.a1 Prupe.5G052700_v2.0.a1 Prupe.5G052700_v2.0.a1 Prupe.5G052700_v2.0.a1 Prupe.5G052700_v2.0.a1
pyrus_communis	pycom11g23280
rosa_chinensis	RchiOBHm_Chr5g0030771
rosa_laevigata	RLG00000033250
rosa_multiflora	Rmu_sc0009742.1_g000012 Rmu_sc0021923.1_g000002
rosa_roxburghii	Rroxscaffold_1G00049550
rosa_rugosa	Rorug05G0120600 Rorug05G0120700
rosa_samantha	Rh1AG151000 Rh1CG142200 Rh5AG212700 Rh5BG212000 Rh5CG235200 Rh5DG216800
rosa_wichuraiana	Rw1G012370 Rw5G019480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	599
Acc36I	ACCTGC	1 cut(s)	599
AccB1I	GGYRCC	2 cut(s)	20, 102
AciI	CCGC	1 cut(s)	982
AcoI	YGGCCR	1 cut(s)	137
AcsI	RAATTY	2 cut(s)	350, 475
AcuI	CTGAAG	2 cut(s)	212, 609
AfaI	GTAC	2 cut(s)	41, 647
AflII	CTTAAG	1 cut(s)	197
AflIII	ACRYGT	1 cut(s)	61
AgeI	ACCGGT	1 cut(s)	624
AgsI	TTSAA	5 cut(s)	382, 557, 572, 941, 1030
AhlI	ACTAGT	1 cut(s)	157
AjnI	CCWGG	1 cut(s)	16
AjuI	GAANNNNNNNTTGG	4 cut(s)	503, 535, 898, 930
AluBI	AGCT	8 cut(s)	196, 413, 428, 533, 593, 658, 818, 977
AluI	AGCT	8 cut(s)	196, 413, 428, 533, 593, 658, 818, 977
Alw21I	GWGCWC	1 cut(s)	660
Alw26I	GTCTC	1 cut(s)	854
AlwNI	CAGNNNCTG	1 cut(s)	754
Ama87I	CYCGRG	1 cut(s)	1053
AoxI	GGCC	1 cut(s)	137
ApeKI	GCWGC	1 cut(s)	815
ApoI	RAATTY	2 cut(s)	350, 475
AsiGI	ACCGGT	1 cut(s)	624
Asp700I	GAANNNNTTC	1 cut(s)	443
AspLEI	GCGC	1 cut(s)	958
AspS9I	GGNCC	1 cut(s)	851
AsuHPI	GGTGA	1 cut(s)	413
AvaI	CYCGRG	1 cut(s)	1053
AvaII	GGWCC	1 cut(s)	851
BanI	GGYRCC	2 cut(s)	20, 102
BanII	GRGCYC	1 cut(s)	660
BauI	CACGAG	1 cut(s)	396
BbsI	GAAGAC	1 cut(s)	68
Bbv12I	GWGCWC	1 cut(s)	660
BbvI	GCAGC	1 cut(s)	827
BccI	CCATC	2 cut(s)	494, 946
BceAI	ACGGC	1 cut(s)	124
BcgI	CGANNNNNNTGC	2 cut(s)	716, 750
BciT130I	CCWGG	1 cut(s)	18
BcoDI	GTCTC	1 cut(s)	854
BcuI	ACTAGT	1 cut(s)	157
BfaI	CTAG	5 cut(s)	128, 158, 456, 978, 1040
BfmI	CTRYAG	1 cut(s)	855
BfrI	CTTAAG	1 cut(s)	197
BfuAI	ACCTGC	1 cut(s)	599
BisI	GCNGC	2 cut(s)	816, 983
BlsI	GCNGC	2 cut(s)	817, 984
BmcAI	AGTACT	1 cut(s)	647
Bme1390I	CCNGG	1 cut(s)	18
Bme18I	GGWCC	1 cut(s)	851
BmeT110I	CYCGRG	1 cut(s)	1053
BmgT120I	GGNCC	1 cut(s)	851
BmiI	GGNNCC	3 cut(s)	22, 104, 852
BmrFI	CCNGG	1 cut(s)	18
BmrI	ACTGGG	1 cut(s)	742
BmsI	GCATC	2 cut(s)	382, 394
BmuI	ACTGGG	1 cut(s)	742
BpiI	GAAGAC	1 cut(s)	68
BplI	GAGNNNNNCTC	2 cut(s)	986, 1018
BpmI	CTGGAG	1 cut(s)	824
BsaJI	CCNNGG	1 cut(s)	918
BsaWI	WCCGGW	1 cut(s)	624
Bse118I	RCCGGY	1 cut(s)	624
Bse1I	ACTGG	3 cut(s)	322, 748, 827
Bse3DI	GCAATG	2 cut(s)	185, 816
BseBI	CCWGG	1 cut(s)	18
BseDI	CCNNGG	1 cut(s)	918
BseGI	GGATG	2 cut(s)	180, 784
BseMI	GCAATG	2 cut(s)	185, 816
BseMII	CTCAG	2 cut(s)	260, 673
BseNI	ACTGG	3 cut(s)	322, 748, 827
BseRI	GAGGAG	2 cut(s)	286, 668
BseXI	GCAGC	1 cut(s)	827
BseYI	CCCAGC	1 cut(s)	424
BshFI	GGCC	1 cut(s)	139
BshNI	GGYRCC	2 cut(s)	20, 102
BshTI	ACCGGT	1 cut(s)	624
BsiHKAI	GWGCWC	1 cut(s)	660
BsiHKCI	CYCGRG	1 cut(s)	1053
BsiSI	CCGG	1 cut(s)	625
BsmAI	GTCTC	1 cut(s)	854
BsnI	GGCC	1 cut(s)	139
BsoBI	CYCGRG	1 cut(s)	1053
Bsp1286I	GDGCHC	1 cut(s)	660
Bsp143I	GATC	1 cut(s)	163
BspACI	CCGC	1 cut(s)	982
BspANI	GGCC	1 cut(s)	139
BspCNI	CTCAG	2 cut(s)	261, 672
BspLI	GGNNCC	3 cut(s)	22, 104, 852
BspMI	ACCTGC	1 cut(s)	599
BspT107I	GGYRCC	2 cut(s)	20, 102
BspTI	CTTAAG	1 cut(s)	197
BsrDI	GCAATG	2 cut(s)	185, 816
BsrFI	RCCGGY	1 cut(s)	624
BsrI	ACTGG	3 cut(s)	322, 748, 827
BssAI	RCCGGY	1 cut(s)	624
BssECI	CCNNGG	1 cut(s)	918
BssMI	GATC	1 cut(s)	163
BssSI	CACGAG	1 cut(s)	396
BssT1I	CCWWGG	1 cut(s)	918
Bst2BI	CACGAG	1 cut(s)	396
Bst2UI	CCWGG	1 cut(s)	18
Bst4CI	ACNGT	6 cut(s)	37, 44, 102, 494, 845, 865
BstAFI	CTTAAG	1 cut(s)	197
BstC8I	GCNNGC	4 cut(s)	125, 249, 411, 838
BstDEI	CTNAG	3 cut(s)	269, 468, 659
BstF5I	GGATG	2 cut(s)	180, 784
BstHHI	GCGC	1 cut(s)	958
BstKTI	GATC	1 cut(s)	166
BstMAI	GTCTC	1 cut(s)	854
BstMBI	GATC	1 cut(s)	163
BstMWI	GCNNNNNNNGC	3 cut(s)	89, 530, 815
BstNI	CCWGG	1 cut(s)	18
BstNSI	RCATGY	2 cut(s)	65, 989
BstSCI	CCNGG	1 cut(s)	16
BstSFI	CTRYAG	1 cut(s)	855
BstV1I	GCAGC	1 cut(s)	827
BstV2I	GAAGAC	1 cut(s)	68
BsuRI	GGCC	1 cut(s)	139
BtsCI	GGATG	2 cut(s)	180, 784
BtsIMutI	CAGTG	2 cut(s)	755, 850
BveI	ACCTGC	1 cut(s)	599
Cac8I	GCNNGC	4 cut(s)	125, 249, 411, 838
CaiI	CAGNNNCTG	1 cut(s)	754
CfoI	GCGC	1 cut(s)	958
Cfr10I	RCCGGY	1 cut(s)	624
Cfr13I	GGNCC	1 cut(s)	851
Csp6I	GTAC	2 cut(s)	40, 646
CspAI	ACCGGT	1 cut(s)	624
CviAII	CATG	3 cut(s)	62, 541, 986
CviQI	GTAC	2 cut(s)	40, 646
DdeI	CTNAG	3 cut(s)	269, 468, 659
DpnI	GATC	1 cut(s)	165
DpnII	GATC	1 cut(s)	163
EaeI	YGGCCR	1 cut(s)	137
Ecl136II	GAGCTC	1 cut(s)	658
Eco130I	CCWWGG	1 cut(s)	918
Eco24I	GRGCYC	1 cut(s)	660
Eco47I	GGWCC	1 cut(s)	851
Eco53kI	GAGCTC	1 cut(s)	658
Eco57I	CTGAAG	2 cut(s)	212, 609
Eco88I	CYCGRG	1 cut(s)	1053
EcoICRI	GAGCTC	1 cut(s)	658
EcoO109I	RGGNCCY	1 cut(s)	851
EcoRII	CCWGG	1 cut(s)	16
EcoT14I	CCWWGG	1 cut(s)	918
EcoT38I	GRGCYC	1 cut(s)	660
ErhI	CCWWGG	1 cut(s)	918
FaeI	CATG	3 cut(s)	65, 544, 989
FatI	CATG	3 cut(s)	61, 540, 985
Fnu4HI	GCNGC	2 cut(s)	816, 983
FokI	GGATG	2 cut(s)	167, 791
FriOI	GRGCYC	1 cut(s)	660
Fsp4HI	GCNGC	2 cut(s)	816, 983
FspBI	CTAG	5 cut(s)	128, 158, 456, 978, 1040
GlaI	GCGC	1 cut(s)	957
GluI	GCNGC	2 cut(s)	816, 983
GsaI	CCCAGC	1 cut(s)	428
GsuI	CTGGAG	1 cut(s)	824
HaeIII	GGCC	1 cut(s)	139
HapII	CCGG	1 cut(s)	625
HhaI	GCGC	1 cut(s)	958
Hin1II	CATG	3 cut(s)	65, 544, 989
Hin6I	GCGC	1 cut(s)	956
HinP1I	GCGC	1 cut(s)	956
HincII	GTYRAC	2 cut(s)	343, 700
HindII	GTYRAC	2 cut(s)	343, 700
HindIII	AAGCTT	2 cut(s)	194, 591
HinfI	GANTC	4 cut(s)	334, 439, 995, 1030
HpaI	GTTAAC	2 cut(s)	343, 700
HpaII	CCGG	1 cut(s)	625
HphI	GGTGA	1 cut(s)	413
Hpy166II	GTNNAC	3 cut(s)	40, 343, 700
Hpy188I	TCNGA	2 cut(s)	270, 662
Hpy188III	TCNNGA	4 cut(s)	236, 389, 803, 941
Hpy8I	GTNNAC	3 cut(s)	40, 343, 700
HpyAV	CCTTC	2 cut(s)	551, 674
HpyCH4III	ACNGT	6 cut(s)	37, 44, 102, 494, 845, 865
HpyCH4V	TGCA	6 cut(s)	92, 371, 395, 608, 737, 840
HpyF10VI	GCNNNNNNNGC	3 cut(s)	89, 530, 815
HpyF3I	CTNAG	3 cut(s)	269, 468, 659
Hsp92II	CATG	3 cut(s)	65, 544, 989
HspAI	GCGC	1 cut(s)	956
KspAI	GTTAAC	2 cut(s)	343, 700
Kzo9I	GATC	1 cut(s)	163
LmnI	GCTCC	1 cut(s)	655
Lsp1109I	GCAGC	1 cut(s)	827
LweI	GCATC	2 cut(s)	382, 394
MaeI	CTAG	5 cut(s)	128, 158, 456, 978, 1040
MaeIII	GTNAC	3 cut(s)	31, 899, 988
MalI	GATC	1 cut(s)	165
MboI	GATC	1 cut(s)	163
MboII	GAAGA	3 cut(s)	68, 317, 410
MfeI	CAATTG	1 cut(s)	603
MhlI	GDGCHC	1 cut(s)	660
MluCI	AATT	7 cut(s)	350, 402, 443, 460, 475, 525, 603
MlyI	GAGTC	1 cut(s)	1004
MnlI	CCTC	8 cut(s)	128, 264, 267, 392, 495, 646, 799, 810
MroXI	GAANNNNTTC	1 cut(s)	443
MseI	TTAA	7 cut(s)	198, 342, 405, 473, 579, 699, 867
MslI	CAYNNNNRTG	1 cut(s)	390
MspA1I	CMGCKG	2 cut(s)	413, 428
MspCI	CTTAAG	1 cut(s)	197
MspI	CCGG	1 cut(s)	625
MspR9I	CCNGG	1 cut(s)	18
MunI	CAATTG	1 cut(s)	603
MvaI	CCWGG	1 cut(s)	18
MwoI	GCNNNNNNNGC	3 cut(s)	89, 530, 815
NdeII	GATC	1 cut(s)	163
NlaIII	CATG	3 cut(s)	65, 544, 989
NlaIV	GGNNCC	3 cut(s)	22, 104, 852
NspI	RCATGY	2 cut(s)	65, 989
PaqCI	CACCTGC	1 cut(s)	599
PciI	ACATGT	1 cut(s)	61
PdmI	GAANNNNTTC	1 cut(s)	443
PfeI	GAWTC	3 cut(s)	334, 439, 1030
PinAI	ACCGGT	1 cut(s)	624
PkrI	GCNGC	2 cut(s)	817, 984
PleI	GAGTC	1 cut(s)	1003
PpsI	GAGTC	1 cut(s)	1003
PpuMI	RGGWCCY	1 cut(s)	851
PscI	ACATGT	1 cut(s)	61
Psp124BI	GAGCTC	1 cut(s)	660
Psp5II	RGGWCCY	1 cut(s)	851
Psp6I	CCWGG	1 cut(s)	16
PspFI	CCCAGC	1 cut(s)	424
PspGI	CCWGG	1 cut(s)	16
PspN4I	GGNNCC	3 cut(s)	22, 104, 852
PspPI	GGNCC	1 cut(s)	851
PspPPI	RGGWCCY	1 cut(s)	851
PstNI	CAGNNNCTG	1 cut(s)	754
PvuII	CAGCTG	2 cut(s)	413, 428
RsaI	GTAC	2 cut(s)	41, 647
RsaNI	GTAC	2 cut(s)	40, 646
RseI	CAYNNNNRTG	1 cut(s)	390
SacI	GAGCTC	1 cut(s)	660
SaqAI	TTAA	7 cut(s)	198, 342, 405, 473, 579, 699, 867
SatI	GCNGC	2 cut(s)	816, 983
Sau3AI	GATC	1 cut(s)	163
Sau96I	GGNCC	1 cut(s)	851
ScaI	AGTACT	1 cut(s)	647
SchI	GAGTC	1 cut(s)	1004
ScrFI	CCNGG	1 cut(s)	18
SduI	GDGCHC	1 cut(s)	660
SfaNI	GCATC	2 cut(s)	382, 394
SfcI	CTRYAG	1 cut(s)	855
SinI	GGWCC	1 cut(s)	851
SmiMI	CAYNNNNRTG	1 cut(s)	390
SmlI	CTYRAG	1 cut(s)	197
SmoI	CTYRAG	1 cut(s)	197
SpeI	ACTAGT	1 cut(s)	157
Sse9I	AATT	7 cut(s)	350, 402, 443, 460, 475, 525, 603
SsiI	CCGC	1 cut(s)	982
SspI	AATATT	1 cut(s)	1014
SspMI	CTAG	5 cut(s)	128, 158, 456, 978, 1040
SstI	GAGCTC	1 cut(s)	660
StyD4I	CCNGG	1 cut(s)	16
StyI	CCWWGG	1 cut(s)	918
TaaI	ACNGT	6 cut(s)	37, 44, 102, 494, 845, 865
TaqI	TCGA	1 cut(s)	447
TaqII	GACCGA	1 cut(s)	1007
TasI	AATT	7 cut(s)	350, 402, 443, 460, 475, 525, 603
TatI	WGTACW	1 cut(s)	645
TauI	GCSGC	1 cut(s)	985
TfiI	GAWTC	3 cut(s)	334, 439, 1030
Tru1I	TTAA	7 cut(s)	198, 342, 405, 473, 579, 699, 867
Tru9I	TTAA	7 cut(s)	198, 342, 405, 473, 579, 699, 867
TscAI	CASTG	2 cut(s)	755, 850
TseI	GCWGC	1 cut(s)	815
TspDTI	ATGAA	3 cut(s)	465, 694, 795
TspRI	CASTG	2 cut(s)	755, 850
Vha464I	CTTAAG	1 cut(s)	197
VpaK11BI	GGWCC	1 cut(s)	851
XapI	RAATTY	2 cut(s)	350, 475
XceI	RCATGY	2 cut(s)	65, 989
XmnI	GAANNNNTTC	1 cut(s)	443
XspI	CTAG	5 cut(s)	128, 158, 456, 978, 1040
ZrmI	AGTACT	1 cut(s)	647

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.