Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0004054

Physical Location & Seq

Genomic Coordinates Forward (+)

15949267 .. 15953269

Gene Structure 4003 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G241400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

ATGGCCAAGAAAGGAAGCTCAAAGTTGAATATTGCTATTATTCATCCCGATCTGGGTATAGGTGGAGCTGAAAGACTAATTGTTGATGCGGCTGTGGGACTCGCATCCCATGGGCATAACGTTCATGTTTTCACAGCGCACCATGACAAAAATCGATGTTTTGAGGAGACTATTTCTGGTACCTTTCCTGTGACTGTCTATGGTGCTTTCCTACCCCGACATATATTCAATCATCTTCATGCTTTGTGTGCATATCTACGGTGCCTTTTTGTTGCTCTGTGTATGCTAGTCATGTGGCCATCATTTGATGTGATACTAGCAGATCAGGTTTCTGTTGTCATCCCATTGCTGAAGCTGAAGAAGTCAACAAAGGTTCTATTTTATTGTCATTTTCCAGATTTATTGCTGGCTCAACATACAACTATTCTAAGGAGGATATATAGAAAACCAATAGACTTCATAGAAGAAATGACAACTGGAATTGCAGATAAGATTCTTGTTAATAGCAAATTTACAGAATCTATGTTCGCAAAGACCTTCAAGCATCTTGATGCACGAGGAGTTCGGCCAGCTGTTCTTTACCCAGCTGTCAATGTGAATCAGTTTGATGAACCCACCAATTCTTACAAGTTGAATTTTCTGTCCATCAACCGTTTTGAGAAGAAAAAGAATATAGACTTGGCAATTTCAGCCTTTTCTATGCTTCGCACCCTTAGAGGAGATGTGCTTCAAGACCTTAATCTGGCTGAAGCTTCCTTGACAATTGCAGGTGGTTTTGATAAGCGCTTGAAGGAAAATGTTGAGTACTTGGAGGAGCTCAGAAGTTTAGCGGAAAGTGAAGGAGTGTCTAGTCAGGTTAACTTCATCACATCTTGCTCAACAGCTGAAAGAAATGCACTTCTCTCCCAATGCCTATGTGTTCTTTATACGCCAAAGGATGAACACTTTGGCATTGTTCCTCTGGAAGCGATGGCGGCTTACAAACCTGTTATTGCATGCAATAGTGGGGGGCCTGTAGAGACAGTTAAGAATGGTGTAACAGGATTTCTTTGTGAAGGTAACTCAAGAGAATTCTCCTTGGCTATGGCCAAACTCATTCACGACCCACAGATGGCACAGAGAATGGGTACGGAAGCTCGAAAGCATGTCACAGAGTCGTTCTCTACAAAAATATTTGGTCAGAACTTGAATCAATACCTTGTTGATGTTGCTCGGTCAAAGAGAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 map00510 map00513 map01100

Pfam Domains

Protein Families

Glyco_transf_4 Glycos_transf_1

Protein Analysis

410

Amino Acids

45.6

Weight (kDa)

8.58

Isoelectric Point (pI)

34.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004054)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78800
fragaria_vesca	FvH4_3g18220 FvH4_3g18220
malus_domestica	MD00G1077500.v1.1 MD00G1078000.v1.1 MD03G1178900.v1.1 MD11G1264500.v1.1
prunus_persica	Prupe.4G169100_v2.0.a1 Prupe.4G241400_v2.0.a1 Prupe.4G241400_v2.0.a1 Prupe.4G241400_v2.0.a1 Prupe.5G052700_v2.0.a1 Prupe.5G052700_v2.0.a1 Prupe.5G052700_v2.0.a1 Prupe.5G052700_v2.0.a1 Prupe.5G052700_v2.0.a1 Prupe.5G052700_v2.0.a1
pyrus_communis	pycom11g23280
rosa_chinensis	RchiOBHm_Chr5g0030771
rosa_laevigata	RLG00000033250
rosa_multiflora	Rmu_sc0009742.1_g000012 Rmu_sc0021923.1_g000002
rosa_roxburghii	Rroxscaffold_1G00049550
rosa_rugosa	Rorug05G0120600 Rorug05G0120700
rosa_samantha	Rh1AG151000 Rh1CG142200 Rh5AG212700 Rh5BG212000 Rh5CG235200 Rh5DG216800
rosa_wichuraiana	Rw1G012370 Rw5G019480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	758
Acc36I	ACCTGC	1 cut(s)	758
Acc65I	GGTACC	1 cut(s)	179
AccB1I	GGYRCC	2 cut(s)	179, 261
AciI	CCGC	3 cut(s)	89, 830, 974
AclI	AACGTT	1 cut(s)	120
AcoI	YGGCCR	4 cut(s)	3, 296, 566, 1086
AcsI	RAATTY	3 cut(s)	509, 634, 1070
AcuI	CTGAAG	3 cut(s)	371, 377, 768
AfaI	GTAC	3 cut(s)	181, 806, 1129
AfeI	AGCGCT	1 cut(s)	785
AfiI	CCNNNNNNNGG	3 cut(s)	53, 742, 1111
AgsI	TTSAA	7 cut(s)	28, 229, 541, 634, 731, 790, 1189
AjuI	GAANNNNNNNTTGG	2 cut(s)	662, 694
AluBI	AGCT	9 cut(s)	18, 68, 355, 572, 587, 752, 817, 884, 1136
AluI	AGCT	9 cut(s)	18, 68, 355, 572, 587, 752, 817, 884, 1136
Alw21I	GWGCWC	1 cut(s)	819
Alw26I	GTCTC	3 cut(s)	161, 1013, 1218
Aor51HI	AGCGCT	1 cut(s)	785
AoxI	GGCC	5 cut(s)	3, 296, 566, 1010, 1086
ApoI	RAATTY	3 cut(s)	509, 634, 1070
Asp718I	GGTACC	1 cut(s)	179
AspLEI	GCGC	2 cut(s)	139, 786
AspS9I	GGNCC	1 cut(s)	1010
BalI	TGGCCA	3 cut(s)	5, 298, 1088
BanI	GGYRCC	2 cut(s)	179, 261
BanII	GRGCYC	1 cut(s)	819
BauI	CACGAG	1 cut(s)	555
Bbv12I	GWGCWC	1 cut(s)	819
BccI	CCATC	4 cut(s)	307, 653, 964, 1105
BcoDI	GTCTC	3 cut(s)	161, 1013, 1218
BfaI	CTAG	3 cut(s)	287, 317, 849
BfmI	CTRYAG	1 cut(s)	1014
BfoI	RGCGCY	1 cut(s)	787
BfuAI	ACCTGC	1 cut(s)	758
BisI	GCNGC	2 cut(s)	90, 975
BlsI	GCNGC	2 cut(s)	91, 976
BmcAI	AGTACT	1 cut(s)	806
BmgT120I	GGNCC	1 cut(s)	1010
BmiI	GGNNCC	3 cut(s)	181, 263, 1011
BmsI	GCATC	4 cut(s)	76, 113, 541, 553
BplI	GAGNNNNNCTC	2 cut(s)	1145, 1177
BpuEI	CTTGAG	1 cut(s)	1048
Bsa29I	ATCGAT	1 cut(s)	154
BsaJI	CCNNGG	2 cut(s)	109, 1077
Bsc4I	CCNNNNNNNGG	3 cut(s)	53, 742, 1111
Bse1I	ACTGG	1 cut(s)	481
Bse3DI	GCAATG	1 cut(s)	344
BseCI	ATCGAT	1 cut(s)	154
BseDI	CCNNGG	2 cut(s)	109, 1077
BseGI	GGATG	4 cut(s)	43, 104, 339, 943
BseLI	CCNNNNNNNGG	3 cut(s)	53, 742, 1111
BseMI	GCAATG	1 cut(s)	344
BseMII	CTCAG	1 cut(s)	832
BseNI	ACTGG	1 cut(s)	481
BseRI	GAGGAG	4 cut(s)	179, 573, 732, 827
BseYI	CCCAGC	1 cut(s)	583
BshFI	GGCC	5 cut(s)	5, 298, 568, 1012, 1088
BshNI	GGYRCC	2 cut(s)	179, 261
BshVI	ATCGAT	1 cut(s)	154
BsiHKAI	GWGCWC	1 cut(s)	819
BslFI	GGGAC	1 cut(s)	111
BslI	CCNNNNNNNGG	3 cut(s)	53, 742, 1111
BsmAI	GTCTC	3 cut(s)	161, 1013, 1218
BsmFI	GGGAC	1 cut(s)	111
BsnI	GGCC	5 cut(s)	5, 298, 568, 1012, 1088
Bsp1286I	GDGCHC	1 cut(s)	819
Bsp143I	GATC	2 cut(s)	49, 322
Bsp19I	CCATGG	1 cut(s)	109
BspACI	CCGC	3 cut(s)	89, 830, 974
BspANI	GGCC	5 cut(s)	5, 298, 568, 1012, 1088
BspCNI	CTCAG	1 cut(s)	831
BspDI	ATCGAT	1 cut(s)	154
BspLI	GGNNCC	3 cut(s)	181, 263, 1011
BspMI	ACCTGC	1 cut(s)	758
BspT107I	GGYRCC	2 cut(s)	179, 261
BsrDI	GCAATG	1 cut(s)	344
BsrI	ACTGG	1 cut(s)	481
BssECI	CCNNGG	2 cut(s)	109, 1077
BssMI	GATC	2 cut(s)	49, 322
BssSI	CACGAG	1 cut(s)	555
BssT1I	CCWWGG	2 cut(s)	109, 1077
Bst2BI	CACGAG	1 cut(s)	555
Bst4CI	ACNGT	4 cut(s)	196, 261, 653, 1024
BstC8I	GCNNGC	3 cut(s)	408, 570, 997
BstDEI	CTNAG	3 cut(s)	428, 713, 818
BstDSI	CCRYGG	1 cut(s)	109
BstF5I	GGATG	4 cut(s)	43, 104, 339, 943
BstH2I	RGCGCY	1 cut(s)	787
BstHHI	GCGC	2 cut(s)	139, 786
BstKTI	GATC	2 cut(s)	52, 325
BstMAI	GTCTC	3 cut(s)	161, 1013, 1218
BstMBI	GATC	2 cut(s)	49, 322
BstMWI	GCNNNNNNNGC	3 cut(s)	248, 689, 974
BstNSI	RCATGY	2 cut(s)	999, 1148
BstSFI	CTRYAG	1 cut(s)	1014
Bsu15I	ATCGAT	1 cut(s)	154
BsuRI	GGCC	5 cut(s)	5, 298, 568, 1012, 1088
BsuTUI	ATCGAT	1 cut(s)	154
BtgI	CCRYGG	1 cut(s)	109
BtgZI	GCGATG	1 cut(s)	983
BtsCI	GGATG	4 cut(s)	43, 104, 339, 943
BveI	ACCTGC	1 cut(s)	758
Cac8I	GCNNGC	3 cut(s)	408, 570, 997
CfoI	GCGC	2 cut(s)	139, 786
Cfr13I	GGNCC	1 cut(s)	1010
ClaI	ATCGAT	1 cut(s)	154
Csp6I	GTAC	3 cut(s)	180, 805, 1128
CviAII	CATG	7 cut(s)	110, 125, 143, 239, 292, 996, 1145
CviQI	GTAC	3 cut(s)	180, 805, 1128
DdeI	CTNAG	3 cut(s)	428, 713, 818
DpnI	GATC	2 cut(s)	51, 324
DpnII	GATC	2 cut(s)	49, 322
EaeI	YGGCCR	4 cut(s)	3, 296, 566, 1086
Ecl136II	GAGCTC	1 cut(s)	817
Eco130I	CCWWGG	2 cut(s)	109, 1077
Eco24I	GRGCYC	1 cut(s)	819
Eco47III	AGCGCT	1 cut(s)	785
Eco53kI	GAGCTC	1 cut(s)	817
Eco57I	CTGAAG	3 cut(s)	371, 377, 768
EcoICRI	GAGCTC	1 cut(s)	817
EcoO109I	RGGNCCY	1 cut(s)	1010
EcoRI	GAATTC	1 cut(s)	1070
EcoT14I	CCWWGG	2 cut(s)	109, 1077
EcoT38I	GRGCYC	1 cut(s)	819
ErhI	CCWWGG	2 cut(s)	109, 1077
FaeI	CATG	7 cut(s)	113, 128, 146, 242, 295, 999, 1148
FaqI	GGGAC	1 cut(s)	111
FatI	CATG	7 cut(s)	109, 124, 142, 238, 291, 995, 1144
Fnu4HI	GCNGC	2 cut(s)	90, 975
FokI	GGATG	4 cut(s)	30, 91, 326, 950
FriOI	GRGCYC	1 cut(s)	819
Fsp4HI	GCNGC	2 cut(s)	90, 975
FspBI	CTAG	3 cut(s)	287, 317, 849
GlaI	GCGC	2 cut(s)	138, 785
GluI	GCNGC	2 cut(s)	90, 975
GsaI	CCCAGC	1 cut(s)	587
HaeII	RGCGCY	1 cut(s)	787
HaeIII	GGCC	5 cut(s)	5, 298, 568, 1012, 1088
HhaI	GCGC	2 cut(s)	139, 786
Hin1II	CATG	7 cut(s)	113, 128, 146, 242, 295, 999, 1148
Hin6I	GCGC	2 cut(s)	137, 784
HinP1I	GCGC	2 cut(s)	137, 784
HincII	GTYRAC	2 cut(s)	366, 859
HindII	GTYRAC	2 cut(s)	366, 859
HindIII	AAGCTT	1 cut(s)	750
HinfI	GANTC	6 cut(s)	99, 493, 518, 598, 1154, 1189
HpaI	GTTAAC	1 cut(s)	859
Hpy166II	GTNNAC	2 cut(s)	366, 859
Hpy188I	TCNGA	2 cut(s)	821, 1182
Hpy188III	TCNNGA	7 cut(s)	47, 395, 548, 731, 962, 1065, 1100
Hpy8I	GTNNAC	2 cut(s)	366, 859
HpyAV	CCTTC	4 cut(s)	547, 784, 833, 1049
HpyCH4III	ACNGT	4 cut(s)	196, 261, 653, 1024
HpyCH4IV	ACGT	1 cut(s)	120
HpyCH4V	TGCA	7 cut(s)	251, 485, 554, 767, 896, 995, 999
HpyF10VI	GCNNNNNNNGC	3 cut(s)	248, 689, 974
HpyF3I	CTNAG	3 cut(s)	428, 713, 818
HpySE526I	ACGT	1 cut(s)	120
Hsp92II	CATG	7 cut(s)	113, 128, 146, 242, 295, 999, 1148
HspAI	GCGC	2 cut(s)	137, 784
KpnI	GGTACC	1 cut(s)	183
KspAI	GTTAAC	1 cut(s)	859
Kzo9I	GATC	2 cut(s)	49, 322
LmnI	GCTCC	2 cut(s)	65, 814
LweI	GCATC	4 cut(s)	76, 113, 541, 553
MaeI	CTAG	3 cut(s)	287, 317, 849
MaeII	ACGT	1 cut(s)	120
MaeIII	GTNAC	4 cut(s)	190, 1036, 1058, 1147
MalI	GATC	2 cut(s)	51, 324
MboI	GATC	2 cut(s)	49, 322
MboII	GAAGA	4 cut(s)	227, 370, 476, 673
MfeI	CAATTG	1 cut(s)	762
MhlI	GDGCHC	1 cut(s)	819
MlsI	TGGCCA	3 cut(s)	5, 298, 1088
MluCI	AATT	8 cut(s)	78, 480, 509, 619, 634, 684, 762, 1070
MluNI	TGGCCA	3 cut(s)	5, 298, 1088
MlyI	GAGTC	2 cut(s)	93, 1163
MnlI	CCTC	6 cut(s)	157, 426, 551, 710, 805, 969
Mox20I	TGGCCA	3 cut(s)	5, 298, 1088
MscI	TGGCCA	3 cut(s)	5, 298, 1088
MseI	TTAA	4 cut(s)	501, 738, 858, 1026
MslI	CAYNNNNRTG	2 cut(s)	237, 549
Msp20I	TGGCCA	3 cut(s)	5, 298, 1088
MspA1I	CMGCKG	3 cut(s)	572, 587, 884
MunI	CAATTG	1 cut(s)	762
MwoI	GCNNNNNNNGC	3 cut(s)	248, 689, 974
NcoI	CCATGG	1 cut(s)	109
NdeII	GATC	2 cut(s)	49, 322
NlaIII	CATG	7 cut(s)	113, 128, 146, 242, 295, 999, 1148
NlaIV	GGNNCC	3 cut(s)	181, 263, 1011
NmuCI	GTSAC	2 cut(s)	190, 1147
NspI	RCATGY	2 cut(s)	999, 1148
PaeI	GCATGC	1 cut(s)	999
PaqCI	CACCTGC	1 cut(s)	758
PfeI	GAWTC	4 cut(s)	493, 518, 598, 1189
PkrI	GCNGC	2 cut(s)	91, 976
PleI	GAGTC	2 cut(s)	93, 1162
PpsI	GAGTC	2 cut(s)	93, 1162
Psp124BI	GAGCTC	1 cut(s)	819
Psp1406I	AACGTT	1 cut(s)	120
PspFI	CCCAGC	1 cut(s)	583
PspN4I	GGNNCC	3 cut(s)	181, 263, 1011
PspPI	GGNCC	1 cut(s)	1010
PvuII	CAGCTG	3 cut(s)	572, 587, 884
RsaI	GTAC	3 cut(s)	181, 806, 1129
RsaNI	GTAC	3 cut(s)	180, 805, 1128
RseI	CAYNNNNRTG	2 cut(s)	237, 549
SacI	GAGCTC	1 cut(s)	819
SaqAI	TTAA	4 cut(s)	501, 738, 858, 1026
SatI	GCNGC	2 cut(s)	90, 975
Sau3AI	GATC	2 cut(s)	49, 322
Sau96I	GGNCC	1 cut(s)	1010
ScaI	AGTACT	1 cut(s)	806
SchI	GAGTC	2 cut(s)	93, 1163
SduI	GDGCHC	1 cut(s)	819
SfaNI	GCATC	4 cut(s)	76, 113, 541, 553
SfcI	CTRYAG	1 cut(s)	1014
SmiMI	CAYNNNNRTG	2 cut(s)	237, 549
SmlI	CTYRAG	1 cut(s)	1063
SmoI	CTYRAG	1 cut(s)	1063
SphI	GCATGC	1 cut(s)	999
Sse9I	AATT	8 cut(s)	78, 480, 509, 619, 634, 684, 762, 1070
SsiI	CCGC	3 cut(s)	89, 830, 974
SspI	AATATT	2 cut(s)	31, 1173
SspMI	CTAG	3 cut(s)	287, 317, 849
SstI	GAGCTC	1 cut(s)	819
StyI	CCWWGG	2 cut(s)	109, 1077
TaaI	ACNGT	4 cut(s)	196, 261, 653, 1024
TaiI	ACGT	1 cut(s)	123
TaqI	TCGA	2 cut(s)	154, 1138
TaqII	GACCGA	1 cut(s)	1203
TasI	AATT	8 cut(s)	78, 480, 509, 619, 634, 684, 762, 1070
TatI	WGTACW	1 cut(s)	804
TauI	GCSGC	2 cut(s)	92, 977
TfiI	GAWTC	4 cut(s)	493, 518, 598, 1189
Tru1I	TTAA	4 cut(s)	501, 738, 858, 1026
Tru9I	TTAA	4 cut(s)	501, 738, 858, 1026
TseFI	GTSAC	2 cut(s)	190, 1147
Tsp45I	GTSAC	2 cut(s)	190, 1147
TspDTI	ATGAA	7 cut(s)	32, 113, 227, 448, 624, 853, 954
TspGWI	ACGGA	1 cut(s)	1145
XapI	RAATTY	3 cut(s)	509, 634, 1070
XceI	RCATGY	2 cut(s)	999, 1148
XspI	CTAG	3 cut(s)	287, 317, 849
ZrmI	AGTACT	1 cut(s)	806

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.