Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0004054

Physical Location & Seq

Genomic Coordinates Forward (+)

28338247 .. 28340906

Gene Structure 2660 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG151000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGGCCATAAAGTTCACGTCTTTACCTCACACCATGATAAAAATCGATGCTTTGAGGAGACCATCTCTGGTGCCTTTCCTGTTACTGTGTACGGTGCTTTTCTACCCCGACATGTATTCTATCGTCTTCATGCTTTGTGTGCATACCTACGGTGCCTTAGATCAGGTTTCTGTTGTCATCCCATTGCTGAAGCTTAAGAAGTCGGCAAAGGTGTTGTTTTATTGTCATTTTCCAGATTTGTTGCTCGCTCAACACACAACTATTCTGAGGAGGATATATAGAAAACCCATAGACTTCATAGAAGAAATGACATCTGGAATGGCAGATAAGATTCTTGTTAACAGCAAATTTACAGCACTTACATTTGCAAGGACATTCAAGCATCTTGATGCACAAGGAATTAAGCCAGCTGTTCTTCACCCAGCTGTCAATGTGAATCAATTCGATGAACCTAGCAATTCTCCTAAGTTAAATTTTCTCTCCATCAACCGAGATATGCTTCAAGGTCTTAATCTGGCTGAAGCTTCCTTGACAATTGCAGGTGGCTTTGACAATCGGTTGAGAGAAAAGGTTGAGTACTTGGAGGAGCTCAGAAGTTTAGCAGAAAGGGAAGGAGTGTCCAATCAGGTTAACTTCATCACATCTTGCTCAACAGCCGAAAGAAATGCACTACTCTCCCAGTGCCTATGTGTCGTTTATACACCAAAGGATGAACACTTTGGCATTGTTCCTCTGGAGGCAATGGCAGCTCATAAACCAGTTATTGCGTGCAACAGTGGGGGTCCTGTAGAGACAGTTAAGAATGGCGAAACGGGATTTCTTTGTGAAAGTAACCCAAGAGAGTTTTCCTTGGCTATGGCTAAACTCATTCAAGACCCACAGATGGCACAACGAATGGGTGTAGAAGCTCGGCGGCATGTTACAGAGTCATTCTCTACAAAAATATTCGGTCAGCATTTGAATCAATACCTAGTTGATGTTGCTCGGGCTAAAGAAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 map00510 map00513 map01100

Pfam Domains

Protein Families

Glyco_transf_4 Glycos_transf_1

Protein Analysis

333

Amino Acids

37.35

Weight (kDa)

8.07

Isoelectric Point (pI)

35.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glycos_transf_1	PF00534	173 - 305	2.5e-29	Glycosyl transferases group 1
Glyco_trans_1_4	PF13692	174 - 292	5.2e-18	Glycosyl transferases group 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004054)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78800
fragaria_vesca	FvH4_3g18220 FvH4_3g18220
malus_domestica	MD00G1077500.v1.1 MD00G1078000.v1.1 MD03G1178900.v1.1 MD11G1264500.v1.1
prunus_persica	Prupe.4G169100_v2.0.a1 Prupe.4G241400_v2.0.a1 Prupe.4G241400_v2.0.a1 Prupe.4G241400_v2.0.a1 Prupe.5G052700_v2.0.a1 Prupe.5G052700_v2.0.a1 Prupe.5G052700_v2.0.a1 Prupe.5G052700_v2.0.a1 Prupe.5G052700_v2.0.a1 Prupe.5G052700_v2.0.a1
pyrus_communis	pycom11g23280
rosa_chinensis	RchiOBHm_Chr5g0030771
rosa_laevigata	RLG00000033250
rosa_multiflora	Rmu_sc0009742.1_g000012 Rmu_sc0021923.1_g000002
rosa_roxburghii	Rroxscaffold_1G00049550
rosa_rugosa	Rorug05G0120600 Rorug05G0120700
rosa_samantha	Rh1AG151000 Rh1CG142200 Rh5AG212700 Rh5BG212000 Rh5CG235200 Rh5DG216800
rosa_wichuraiana	Rw1G012370 Rw5G019480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	530
Acc36I	ACCTGC	1 cut(s)	530
AccB1I	GGYRCC	2 cut(s)	70, 152
AciI	CCGC	1 cut(s)	913
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	347, 472
AcuI	CTGAAG	2 cut(s)	209, 540
AfaI	GTAC	2 cut(s)	91, 578
AfiI	CCNNNNNNNGG	1 cut(s)	883
AflII	CTTAAG	1 cut(s)	194
AflIII	ACRYGT	1 cut(s)	111
AgsI	TTSAA	4 cut(s)	379, 503, 872, 961
AjiI	CACGTC	1 cut(s)	18
AjuI	GAANNNNNNNTTGG	2 cut(s)	829, 861
AluBI	AGCT	7 cut(s)	193, 410, 425, 524, 589, 749, 908
AluI	AGCT	7 cut(s)	193, 410, 425, 524, 589, 749, 908
Alw21I	GWGCWC	1 cut(s)	591
Alw26I	GTCTC	2 cut(s)	52, 785
Ama87I	CYCGRG	1 cut(s)	984
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	746
ApoI	RAATTY	2 cut(s)	347, 472
Asp700I	GAANNNNTTC	1 cut(s)	440
AspS9I	GGNCC	1 cut(s)	782
AsuHPI	GGTGA	1 cut(s)	410
AvaI	CYCGRG	1 cut(s)	984
AvaII	GGWCC	1 cut(s)	782
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	2 cut(s)	70, 152
BanII	GRGCYC	1 cut(s)	591
BbsI	GAAGAC	1 cut(s)	118
Bbv12I	GWGCWC	1 cut(s)	591
BbvI	GCAGC	1 cut(s)	758
BccI	CCATC	3 cut(s)	70, 491, 877
BcgI	CGANNNNNNTGC	2 cut(s)	647, 681
BcoDI	GTCTC	2 cut(s)	52, 785
BfaI	CTAG	2 cut(s)	453, 971
BfmI	CTRYAG	1 cut(s)	786
BfrI	CTTAAG	1 cut(s)	194
BfuAI	ACCTGC	1 cut(s)	530
BisI	GCNGC	2 cut(s)	747, 914
BlsI	GCNGC	2 cut(s)	748, 915
BmcAI	AGTACT	1 cut(s)	578
Bme18I	GGWCC	1 cut(s)	782
BmeT110I	CYCGRG	1 cut(s)	984
BmgBI	CACGTC	1 cut(s)	18
BmgT120I	GGNCC	1 cut(s)	782
BmiI	GGNNCC	3 cut(s)	72, 154, 783
BmrI	ACTGGG	1 cut(s)	673
BmsI	GCATC	3 cut(s)	37, 379, 391
BmuI	ACTGGG	1 cut(s)	673
BpiI	GAAGAC	1 cut(s)	118
BplI	GAGNNNNNCTC	4 cut(s)	49, 81, 917, 949
BpmI	CTGGAG	1 cut(s)	755
Bsa29I	ATCGAT	1 cut(s)	45
BsaBI	GATNNNNATC	1 cut(s)	41
BsaI	GGTCTC	1 cut(s)	52
BsaJI	CCNNGG	1 cut(s)	849
Bsc4I	CCNNNNNNNGG	1 cut(s)	883
Bse1I	ACTGG	2 cut(s)	679, 758
Bse3DI	GCAATG	2 cut(s)	182, 747
Bse8I	GATNNNNATC	1 cut(s)	41
BseCI	ATCGAT	1 cut(s)	45
BseDI	CCNNGG	1 cut(s)	849
BseGI	GGATG	2 cut(s)	177, 715
BseJI	GATNNNNATC	1 cut(s)	41
BseLI	CCNNNNNNNGG	1 cut(s)	883
BseMI	GCAATG	2 cut(s)	182, 747
BseMII	CTCAG	2 cut(s)	257, 604
BseNI	ACTGG	2 cut(s)	679, 758
BseRI	GAGGAG	3 cut(s)	70, 283, 599
BseXI	GCAGC	1 cut(s)	758
BseYI	CCCAGC	1 cut(s)	421
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	2 cut(s)	70, 152
BshVI	ATCGAT	1 cut(s)	45
BsiHKAI	GWGCWC	1 cut(s)	591
BsiHKCI	CYCGRG	1 cut(s)	984
BslI	CCNNNNNNNGG	1 cut(s)	883
BsmAI	GTCTC	2 cut(s)	52, 785
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	52
BsoBI	CYCGRG	1 cut(s)	984
Bsp1286I	GDGCHC	1 cut(s)	591
Bsp143I	GATC	1 cut(s)	160
BspACI	CCGC	1 cut(s)	913
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	2 cut(s)	258, 603
BspDI	ATCGAT	1 cut(s)	45
BspLI	GGNNCC	3 cut(s)	72, 154, 783
BspMI	ACCTGC	1 cut(s)	530
BspT107I	GGYRCC	2 cut(s)	70, 152
BspTI	CTTAAG	1 cut(s)	194
BspTNI	GGTCTC	1 cut(s)	52
BsrDI	GCAATG	2 cut(s)	182, 747
BsrI	ACTGG	2 cut(s)	679, 758
BssECI	CCNNGG	1 cut(s)	849
BssMI	GATC	1 cut(s)	160
BssT1I	CCWWGG	1 cut(s)	849
Bst4CI	ACNGT	5 cut(s)	87, 94, 152, 776, 796
BstAFI	CTTAAG	1 cut(s)	194
BstC8I	GCNNGC	3 cut(s)	246, 408, 769
BstDEI	CTNAG	4 cut(s)	157, 266, 465, 590
BstF5I	GGATG	2 cut(s)	177, 715
BstKTI	GATC	1 cut(s)	163
BstMAI	GTCTC	2 cut(s)	52, 785
BstMBI	GATC	1 cut(s)	160
BstMWI	GCNNNNNNNGC	2 cut(s)	139, 746
BstNSI	RCATGY	2 cut(s)	115, 920
BstSFI	CTRYAG	1 cut(s)	786
BstV1I	GCAGC	1 cut(s)	758
BstV2I	GAAGAC	1 cut(s)	118
Bsu15I	ATCGAT	1 cut(s)	45
BsuRI	GGCC	1 cut(s)	5
BsuTUI	ATCGAT	1 cut(s)	45
BtrI	CACGTC	1 cut(s)	18
BtsCI	GGATG	2 cut(s)	177, 715
BtsIMutI	CAGTG	2 cut(s)	686, 781
BveI	ACCTGC	1 cut(s)	530
Cac8I	GCNNGC	3 cut(s)	246, 408, 769
Cfr13I	GGNCC	1 cut(s)	782
ClaI	ATCGAT	1 cut(s)	45
Csp6I	GTAC	2 cut(s)	90, 577
CviAII	CATG	4 cut(s)	34, 112, 130, 917
CviQI	GTAC	2 cut(s)	90, 577
DdeI	CTNAG	4 cut(s)	157, 266, 465, 590
DpnI	GATC	1 cut(s)	162
DpnII	GATC	1 cut(s)	160
EaeI	YGGCCR	1 cut(s)	3
Ecl136II	GAGCTC	1 cut(s)	589
Eco130I	CCWWGG	1 cut(s)	849
Eco24I	GRGCYC	1 cut(s)	591
Eco31I	GGTCTC	1 cut(s)	52
Eco47I	GGWCC	1 cut(s)	782
Eco53kI	GAGCTC	1 cut(s)	589
Eco57I	CTGAAG	2 cut(s)	209, 540
Eco88I	CYCGRG	1 cut(s)	984
EcoICRI	GAGCTC	1 cut(s)	589
EcoO109I	RGGNCCY	1 cut(s)	782
EcoT14I	CCWWGG	1 cut(s)	849
EcoT38I	GRGCYC	1 cut(s)	591
ErhI	CCWWGG	1 cut(s)	849
FaeI	CATG	4 cut(s)	37, 115, 133, 920
FatI	CATG	4 cut(s)	33, 111, 129, 916
Fnu4HI	GCNGC	2 cut(s)	747, 914
FokI	GGATG	2 cut(s)	164, 722
FriOI	GRGCYC	1 cut(s)	591
Fsp4HI	GCNGC	2 cut(s)	747, 914
FspBI	CTAG	2 cut(s)	453, 971
GluI	GCNGC	2 cut(s)	747, 914
GsaI	CCCAGC	1 cut(s)	425
GsuI	CTGGAG	1 cut(s)	755
HaeIII	GGCC	1 cut(s)	5
Hin1II	CATG	4 cut(s)	37, 115, 133, 920
HincII	GTYRAC	2 cut(s)	340, 631
HindII	GTYRAC	2 cut(s)	340, 631
HindIII	AAGCTT	2 cut(s)	191, 522
HinfI	GANTC	4 cut(s)	331, 436, 926, 961
HpaI	GTTAAC	2 cut(s)	340, 631
HphI	GGTGA	1 cut(s)	410
Hpy166II	GTNNAC	4 cut(s)	15, 90, 340, 631
Hpy188I	TCNGA	2 cut(s)	267, 593
Hpy188III	TCNNGA	5 cut(s)	233, 315, 386, 734, 872
Hpy8I	GTNNAC	4 cut(s)	15, 90, 340, 631
HpyAV	CCTTC	1 cut(s)	605
HpyCH4III	ACNGT	5 cut(s)	87, 94, 152, 776, 796
HpyCH4IV	ACGT	1 cut(s)	17
HpyCH4V	TGCA	6 cut(s)	142, 368, 392, 539, 668, 771
HpyF10VI	GCNNNNNNNGC	2 cut(s)	139, 746
HpyF3I	CTNAG	4 cut(s)	157, 266, 465, 590
HpySE526I	ACGT	1 cut(s)	17
Hsp92II	CATG	4 cut(s)	37, 115, 133, 920
KspAI	GTTAAC	2 cut(s)	340, 631
Kzo9I	GATC	1 cut(s)	160
LmnI	GCTCC	1 cut(s)	586
Lsp1109I	GCAGC	1 cut(s)	758
LweI	GCATC	3 cut(s)	37, 379, 391
MaeI	CTAG	2 cut(s)	453, 971
MaeII	ACGT	1 cut(s)	17
MaeIII	GTNAC	3 cut(s)	81, 830, 919
MalI	GATC	1 cut(s)	162
MboI	GATC	1 cut(s)	160
MboII	GAAGA	3 cut(s)	118, 314, 407
MfeI	CAATTG	1 cut(s)	534
MhlI	GDGCHC	1 cut(s)	591
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	6 cut(s)	347, 399, 440, 457, 472, 534
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	935
MnlI	CCTC	7 cut(s)	36, 48, 261, 264, 577, 730, 741
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	440
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	7 cut(s)	195, 339, 402, 470, 510, 630, 798
MslI	CAYNNNNRTG	1 cut(s)	387
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	410, 425
MspCI	CTTAAG	1 cut(s)	194
MunI	CAATTG	1 cut(s)	534
MwoI	GCNNNNNNNGC	2 cut(s)	139, 746
NdeII	GATC	1 cut(s)	160
NlaIII	CATG	4 cut(s)	37, 115, 133, 920
NlaIV	GGNNCC	3 cut(s)	72, 154, 783
NmeAIII	GCCGAG	1 cut(s)	889
NspI	RCATGY	2 cut(s)	115, 920
PaqCI	CACCTGC	1 cut(s)	530
PciI	ACATGT	1 cut(s)	111
PdmI	GAANNNNTTC	1 cut(s)	440
PfeI	GAWTC	3 cut(s)	331, 436, 961
PkrI	GCNGC	2 cut(s)	748, 915
PleI	GAGTC	1 cut(s)	934
PpsI	GAGTC	1 cut(s)	934
PpuMI	RGGWCCY	1 cut(s)	782
PscI	ACATGT	1 cut(s)	111
Psp124BI	GAGCTC	1 cut(s)	591
Psp5II	RGGWCCY	1 cut(s)	782
PspFI	CCCAGC	1 cut(s)	421
PspN4I	GGNNCC	3 cut(s)	72, 154, 783
PspPI	GGNCC	1 cut(s)	782
PspPPI	RGGWCCY	1 cut(s)	782
PvuII	CAGCTG	2 cut(s)	410, 425
RsaI	GTAC	2 cut(s)	91, 578
RsaNI	GTAC	2 cut(s)	90, 577
RseI	CAYNNNNRTG	1 cut(s)	387
SacI	GAGCTC	1 cut(s)	591
SaqAI	TTAA	7 cut(s)	195, 339, 402, 470, 510, 630, 798
SatI	GCNGC	2 cut(s)	747, 914
Sau3AI	GATC	1 cut(s)	160
Sau96I	GGNCC	1 cut(s)	782
ScaI	AGTACT	1 cut(s)	578
SchI	GAGTC	1 cut(s)	935
SduI	GDGCHC	1 cut(s)	591
SfaNI	GCATC	3 cut(s)	37, 379, 391
SfcI	CTRYAG	1 cut(s)	786
SinI	GGWCC	1 cut(s)	782
SmiMI	CAYNNNNRTG	1 cut(s)	387
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
Sse9I	AATT	6 cut(s)	347, 399, 440, 457, 472, 534
SsiI	CCGC	1 cut(s)	913
SspI	AATATT	1 cut(s)	945
SspMI	CTAG	2 cut(s)	453, 971
SstI	GAGCTC	1 cut(s)	591
StyI	CCWWGG	1 cut(s)	849
TaaI	ACNGT	5 cut(s)	87, 94, 152, 776, 796
TaiI	ACGT	1 cut(s)	20
TaqI	TCGA	2 cut(s)	45, 444
TaqII	GACCGA	1 cut(s)	938
TasI	AATT	6 cut(s)	347, 399, 440, 457, 472, 534
TatI	WGTACW	1 cut(s)	576
TauI	GCSGC	1 cut(s)	916
TfiI	GAWTC	3 cut(s)	331, 436, 961
Tru1I	TTAA	7 cut(s)	195, 339, 402, 470, 510, 630, 798
Tru9I	TTAA	7 cut(s)	195, 339, 402, 470, 510, 630, 798
TscAI	CASTG	2 cut(s)	686, 781
TseI	GCWGC	1 cut(s)	746
TspDTI	ATGAA	5 cut(s)	118, 286, 462, 625, 726
TspRI	CASTG	2 cut(s)	686, 781
Vha464I	CTTAAG	1 cut(s)	194
VpaK11BI	GGWCC	1 cut(s)	782
XapI	RAATTY	2 cut(s)	347, 472
XceI	RCATGY	2 cut(s)	115, 920
XmnI	GAANNNNTTC	1 cut(s)	440
XspI	CTAG	2 cut(s)	453, 971
ZrmI	AGTACT	1 cut(s)	578

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.