Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0004054

Physical Location & Seq

Genomic Coordinates Reverse (-)

15512923 .. 15514149

Gene Structure 1227 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1078000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 195 bp

ATGTTTTCACTTCGCACCACGATAAAAATCGATGCTTTGAGGAGACCGTTTCTGGTGTGTATCTTTCCAGTTACTATATATGGTGCCATCCAACCCCGACATATATTCTATCGACTCCATGCTTTGTGTGCATATATACGGTGCCCTTCTATTGCTCTCTGTATGCTGTTCATGTGGCCATCGTTTGATGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 map00510 map00513 map01100

Pfam Domains

Protein Families

Glyco_transf_4 Glycos_transf_1

Protein Analysis

65

Amino Acids

7.54

Weight (kDa)

9.5

Isoelectric Point (pI)

60.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004054)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78800
fragaria_vesca	FvH4_3g18220 FvH4_3g18220
malus_domestica	MD00G1077500.v1.1 MD00G1078000.v1.1 MD03G1178900.v1.1 MD11G1264500.v1.1
prunus_persica	Prupe.4G169100_v2.0.a1 Prupe.4G241400_v2.0.a1 Prupe.4G241400_v2.0.a1 Prupe.4G241400_v2.0.a1 Prupe.5G052700_v2.0.a1 Prupe.5G052700_v2.0.a1 Prupe.5G052700_v2.0.a1 Prupe.5G052700_v2.0.a1 Prupe.5G052700_v2.0.a1 Prupe.5G052700_v2.0.a1
pyrus_communis	pycom11g23280
rosa_chinensis	RchiOBHm_Chr5g0030771
rosa_laevigata	RLG00000033250
rosa_multiflora	Rmu_sc0009742.1_g000012 Rmu_sc0021923.1_g000002
rosa_roxburghii	Rroxscaffold_1G00049550
rosa_rugosa	Rorug05G0120600 Rorug05G0120700
rosa_samantha	Rh1AG151000 Rh1CG142200 Rh5AG212700 Rh5BG212000 Rh5CG235200 Rh5DG216800
rosa_wichuraiana	Rw1G012370 Rw5G019480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	83, 141
AcoI	YGGCCR	1 cut(s)	176
Alw26I	GTCTC	1 cut(s)	37
AoxI	GGCC	1 cut(s)	176
BaeGI	GKGCMC	1 cut(s)	146
BalI	TGGCCA	1 cut(s)	178
BanI	GGYRCC	2 cut(s)	83, 141
BccI	CCATC	2 cut(s)	95, 187
BcoDI	GTCTC	1 cut(s)	37
BmiI	GGNNCC	2 cut(s)	85, 143
BmsI	GCATC	1 cut(s)	22
Bsa29I	ATCGAT	1 cut(s)	30
BsaBI	GATNNNNATC	1 cut(s)	26
BsaI	GGTCTC	1 cut(s)	37
Bse1I	ACTGG	1 cut(s)	68
Bse8I	GATNNNNATC	1 cut(s)	26
BseCI	ATCGAT	1 cut(s)	30
BseGI	GGATG	1 cut(s)	87
BseJI	GATNNNNATC	1 cut(s)	26
BseNI	ACTGG	1 cut(s)	68
BseRI	GAGGAG	1 cut(s)	55
BseSI	GKGCMC	1 cut(s)	146
BshFI	GGCC	1 cut(s)	178
BshNI	GGYRCC	2 cut(s)	83, 141
BshVI	ATCGAT	1 cut(s)	30
BsmAI	GTCTC	1 cut(s)	37
BsnI	GGCC	1 cut(s)	178
Bso31I	GGTCTC	1 cut(s)	37
Bsp1286I	GDGCHC	1 cut(s)	146
BspANI	GGCC	1 cut(s)	178
BspDI	ATCGAT	1 cut(s)	30
BspLI	GGNNCC	2 cut(s)	85, 143
BspT107I	GGYRCC	2 cut(s)	83, 141
BspTNI	GGTCTC	1 cut(s)	37
BsrI	ACTGG	1 cut(s)	68
Bst4CI	ACNGT	2 cut(s)	48, 141
BstF5I	GGATG	1 cut(s)	87
BstMAI	GTCTC	1 cut(s)	37
BstMWI	GCNNNNNNNGC	1 cut(s)	128
BstSLI	GKGCMC	1 cut(s)	146
Bsu15I	ATCGAT	1 cut(s)	30
BsuRI	GGCC	1 cut(s)	178
BsuTUI	ATCGAT	1 cut(s)	30
BtsCI	GGATG	1 cut(s)	87
ClaI	ATCGAT	1 cut(s)	30
CviAII	CATG	2 cut(s)	119, 172
CviJI	RGCY	1 cut(s)	178
CviKI_1	RGCY	1 cut(s)	178
EaeI	YGGCCR	1 cut(s)	176
Eco31I	GGTCTC	1 cut(s)	37
FaeI	CATG	2 cut(s)	122, 175
FatI	CATG	2 cut(s)	118, 171
FokI	GGATG	1 cut(s)	74
HaeIII	GGCC	1 cut(s)	178
Hin1II	CATG	2 cut(s)	122, 175
HinfI	GANTC	1 cut(s)	114
HpyAV	CCTTC	1 cut(s)	156
HpyCH4III	ACNGT	2 cut(s)	48, 141
HpyCH4V	TGCA	1 cut(s)	131
HpyF10VI	GCNNNNNNNGC	1 cut(s)	128
Hsp92II	CATG	2 cut(s)	122, 175
LpnPI	CCDG	2 cut(s)	38, 81
LweI	GCATC	1 cut(s)	22
MaeIII	GTNAC	1 cut(s)	70
MhlI	GDGCHC	1 cut(s)	146
MlsI	TGGCCA	1 cut(s)	178
MluNI	TGGCCA	1 cut(s)	178
MlyI	GAGTC	1 cut(s)	108
MmeI	TCCRAC	1 cut(s)	115
MnlI	CCTC	1 cut(s)	33
Mox20I	TGGCCA	1 cut(s)	178
MscI	TGGCCA	1 cut(s)	178
Msp20I	TGGCCA	1 cut(s)	178
MwoI	GCNNNNNNNGC	1 cut(s)	128
NlaIII	CATG	2 cut(s)	122, 175
NlaIV	GGNNCC	2 cut(s)	85, 143
PleI	GAGTC	1 cut(s)	108
PpsI	GAGTC	1 cut(s)	108
PspN4I	GGNNCC	2 cut(s)	85, 143
SchI	GAGTC	1 cut(s)	108
SduI	GDGCHC	1 cut(s)	146
SfaNI	GCATC	1 cut(s)	22
SgeI	CNNG	6 cut(s)	31, 65, 80, 108, 131, 184
TaaI	ACNGT	2 cut(s)	48, 141
TaqI	TCGA	2 cut(s)	30, 112
TspDTI	ATGAA	1 cut(s)	160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.